Gchil2078.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2078.t1
Unique NameGchil2078.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length532
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:418791..420911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2078Gchil2078Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 418791..420911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2078.t1Gchil2078.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 418791..420911 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2078.t1.start1Gchil2078.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 418791..418793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2078.t1.CDS1Gchil2078.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 418791..418979 +
Gchil2078.t1.CDS2Gchil2078.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 419070..419427 +
Gchil2078.t1.CDS3Gchil2078.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 419538..419818 +
Gchil2078.t1.CDS4Gchil2078.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 420144..420911 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2078.t1.exon1Gchil2078.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 418791..418979 +
Gchil2078.t1.exon2Gchil2078.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 419070..419427 +
Gchil2078.t1.exon3Gchil2078.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 419538..419818 +
Gchil2078.t1.exon4Gchil2078.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 420144..420911 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2078.t1.intron1Gchil2078.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000019_pilon 418980..419069 +
Gchil2078.t1.intron2Gchil2078.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000019_pilon 419428..419537 +
Gchil2078.t1.intron3Gchil2078.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000019_pilon 419819..420143 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2078.t1.stop1Gchil2078.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 420909..420911 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2078.t1 ID=Gchil2078.t1|Name=Gchil2078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=532bp
MVQTPDSTDSSSDTSSSLDDDCKGKKKKKTNRSTKKSSKKNRKGKKRYNE
SPDSGSDTEMDLEGAQKINKHHKKLSFQMGDTTFTGTDPIAVNEFLQKFK
LACDQNGFSEGTVMWLFQFYLKVQAYYLLQGMLRGNTLAMDEDGTEMLES
CPEVVISFWKHMPPMRLSKRLSRKSSLTIKGLAIRSQVRNYLVRNYLATN
RKVVYNGLARYSQGLGDTLLLGKRPAVPPTLKDKPKRSVLEIEDTTTSEG
SSHLEVPTGIAIHWVGTQGRFSNPSSVPTPYTGTDQYHRGNTKLGLHPSR
TGGKHRAVGVMAEPNLQSEGQYIPRTLKVEENTSQPVPVCHMKYNNYKVR
ASMCFSDRLAVPVTCMLDTGARPNVLNSRVIPKAVLRNLSRPPENNPLVD
VKERPLNLRGMLTPLVQLGHLKVRLQFFVVDRLPTDCLLGTTFIDRHVKA
ILPGSHTVALRHGGRISILGNTETKRGWFVKPKKRISTETVSNKVCITKQ
VVIPPMHQILVPVSFATPGLVILQNHPRLAH*
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spliced messenger RNA

>Gchil2078.t1 ID=Gchil2078.t1|Name=Gchil2078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000019_pilon:418791..420911+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atggttcagacccccgactcgacagactccagttccgatacgagttcatc
gttggatgatgactgtaaaggtaagaagaagaagaagacgaacaggtcga
cgaagaagtcgtcgaaaaagaaccgaaagggtaaaaagcgatacaatgag
tcgcccgactctgggtcggacaccgaaatggacctggagggtgctcagaa
gattaataagcaccacaagaagctcagcttccaaatgggtgacacaacct
tcacaggtacggatcctattgcggtaaatgagtttctacagaagttcaag
cttgcatgtgaccaaaatgggttttccgagggcactgttatgtggctatt
tcagttttaccttaaagtacaagcatactacttgctgcagggtatgctcc
gcggcaacaccttagcgatggatgaggatggcacagagatgttggagtca
tgcccagaggtggtcatttccttttggaaacatatgccaccgatgaggtt
atccaagaggcttagtcggaagtcctcgcttaccatcaaaggtctggcga
tccgttcccaggtacgcaattacctggtacgcaattacctggccactaac
cgaaaggtagtctacaatgggctggctcgatactcccagggccttggaga
tactcttctgctgggaaagagaccagccgtgcctccaaccttgaaggata
aaccgaaaaggtcggtcttggaaattgaagataccacaacctcagagggt
agctcgcacctcgaagtacctacagggatcgctatccactgggtagggac
ccaggggcggttctcgaatccgtcgtcggttccaaccccgtacaccggta
cagatcaataccatcgaggaaacaccaaacttggactccacccctcccgt
acaggaggaaaacaccgagcggttggcgtaatggccgaacccaacctgca
atcggaaggccaatatatacccagaaccttgaaggtagaagagaacacgt
cacaaccagttccggtttgtcatatgaagtacaacaactataaagtacgt
gcttcaatgtgtttctccgatcgccttgcggttccggtcacctgcatgtt
ggatacgggggcccgcccaaacgtgctgaactcccgcgtcatacctaagg
cggtacttcggaacttgagccgacctcccgaaaacaacccgctggtggat
gtaaaagagcgcccattaaaccttcgaggtatgctcacccctttggtgca
gctcggacacctcaaggtaagactgcaattctttgttgtcgaccgtttac
cgacagactgcctactaggtacgaccttcattgacagacatgtcaaagca
atccttcctggttcccatacagtcgccctacgtcacgggggacgaatttc
cattttaggtaatacggaaaccaaacggggatggttcgtcaaaccgaaga
agaggatatccaccgaaacggtctccaacaaagtgtgcattaccaaacag
gttgttatcccgccaatgcaccaaatattggtaccggtgtcgtttgcgac
ccccgggctggtcatattacaaaaccatccgaggttggcacattga
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protein sequence of Gchil2078.t1

>Gchil2078.t1 ID=Gchil2078.t1|Name=Gchil2078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=532bp
MVQTPDSTDSSSDTSSSLDDDCKGKKKKKTNRSTKKSSKKNRKGKKRYNE
SPDSGSDTEMDLEGAQKINKHHKKLSFQMGDTTFTGTDPIAVNEFLQKFK
LACDQNGFSEGTVMWLFQFYLKVQAYYLLQGMLRGNTLAMDEDGTEMLES
CPEVVISFWKHMPPMRLSKRLSRKSSLTIKGLAIRSQVRNYLVRNYLATN
RKVVYNGLARYSQGLGDTLLLGKRPAVPPTLKDKPKRSVLEIEDTTTSEG
SSHLEVPTGIAIHWVGTQGRFSNPSSVPTPYTGTDQYHRGNTKLGLHPSR
TGGKHRAVGVMAEPNLQSEGQYIPRTLKVEENTSQPVPVCHMKYNNYKVR
ASMCFSDRLAVPVTCMLDTGARPNVLNSRVIPKAVLRNLSRPPENNPLVD
VKERPLNLRGMLTPLVQLGHLKVRLQFFVVDRLPTDCLLGTTFIDRHVKA
ILPGSHTVALRHGGRISILGNTETKRGWFVKPKKRISTETVSNKVCITKQ
VVIPPMHQILVPVSFATPGLVILQNHPRLAH*
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mRNA from alignment at tig00000019_pilon:418791..420911+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2078.t1 ID=Gchil2078.t1|Name=Gchil2078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2121bp|location=Sequence derived from alignment at tig00000019_pilon:418791..420911+ (Gracilaria chilensis NLEC103_M9 male)
atggttcagacccccgactcgacagactccagttccgatacgagttcatc
gttggatgatgactgtaaaggtaagaagaagaagaagacgaacaggtcga
cgaagaagtcgtcgaaaaagaaccgaaagggtaaaaagcgatacaatgag
tcgcccgactctgggtcggacaccgaaatggacctggaggtgtaccaacc
gttgaacgatatgttcaccaaagcggttgattacaggacttatcggttga
tcaacaagtcttcttaatacacccaagagggtgctcagaagattaataag
caccacaagaagctcagcttccaaatgggtgacacaaccttcacaggtac
ggatcctattgcggtaaatgagtttctacagaagttcaagcttgcatgtg
accaaaatgggttttccgagggcactgttatgtggctatttcagttttac
cttaaagtacaagcatactacttgctgcagggtatgctccgcggcaacac
cttagcgatggatgaggatggcacagagatgttggagtcatgcccagagg
tggtcatttccttttggaaacatatgccaccgatgaggttatccaagagg
cttagtcggaagtcctcgcttaccatcaaaggtctgggtaaaccgaatcg
gagttttcgctcgcgctttggaatctggaaacccgttgtggtaatgtgtt
cactacctcgaggttaaagtcgctatttgccgacaatgtcgacaaagcga
tccgttcccaggtacgcaattacctggtacgcaattacctggccactaac
cgaaaggtagtctacaatgggctggctcgatactcccagggccttggaga
tactcttctgctgggaaagagaccagccgtgcctccaaccttgaaggata
aaccgaaaaggtcggtcttggaaattgaagataccacaacctcagagggt
agctcgcacctcgaagtacctacagggatcgctatccactgggtagggac
ccaggggcggttctcgaatccgtcgtcggtaggaaattggtcgtcaacgc
gtacaccaactcggtacaatcgccgccaagttcagtgagctcgcatagga
tgccagtagcgagctcccataactcaccacccacatccgacgccactgct
cctaccaaccaggtttcgaagcccccctcaatggtaacgcgagaccctca
aactggaggcctcgtttgctggttttgtctcgcgacagaccatttggcaa
aaaattgccctaacttacatccagggatgagagaccagttgattcaggct
cgcatgcagaatcaccaacacctctatgggtcttcaacgcaagcaccaaa
taggttccaaccccgtacaccggtacagatcaataccatcgaggaaacac
caaacttggactccacccctcccgtacaggaggaaaacaccgagcggttg
gcgtaatggccgaacccaacctgcaatcggaaggccaatatatacccaga
accttgaaggtagaagagaacacgtcacaaccagttccggtttgtcatat
gaagtacaacaactataaagtacgtgcttcaatgtgtttctccgatcgcc
ttgcggttccggtcacctgcatgttggatacgggggcccgcccaaacgtg
ctgaactcccgcgtcatacctaaggcggtacttcggaacttgagccgacc
tcccgaaaacaacccgctggtggatgtaaaagagcgcccattaaaccttc
gaggtatgctcacccctttggtgcagctcggacacctcaaggtaagactg
caattctttgttgtcgaccgtttaccgacagactgcctactaggtacgac
cttcattgacagacatgtcaaagcaatccttcctggttcccatacagtcg
ccctacgtcacgggggacgaatttccattttaggtaatacggaaaccaaa
cggggatggttcgtcaaaccgaagaagaggatatccaccgaaacggtctc
caacaaagtgtgcattaccaaacaggttgttatcccgccaatgcaccaaa
tattggtaccggtgtcgtttgcgacccccgggctggtcatattacaaaac
catccgaggttggcacattga
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Coding sequence (CDS) from alignment at tig00000019_pilon:418791..420911+

>Gchil2078.t1 ID=Gchil2078.t1|Name=Gchil2078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1596bp|location=Sequence derived from alignment at tig00000019_pilon:418791..420911+ (Gracilaria chilensis NLEC103_M9 male)
atggttcagacccccgactcgacagactccagttccgatacgagttcatc
gttggatgatgactgtaaaggtaagaagaagaagaagacgaacaggtcga
cgaagaagtcgtcgaaaaagaaccgaaagggtaaaaagcgatacaatgag
tcgcccgactctgggtcggacaccgaaatggacctggagggtgctcagaa
gattaataagcaccacaagaagctcagcttccaaatgggtgacacaacct
tcacaggtacggatcctattgcggtaaatgagtttctacagaagttcaag
cttgcatgtgaccaaaatgggttttccgagggcactgttatgtggctatt
tcagttttaccttaaagtacaagcatactacttgctgcagggtatgctcc
gcggcaacaccttagcgatggatgaggatggcacagagatgttggagtca
tgcccagaggtggtcatttccttttggaaacatatgccaccgatgaggtt
atccaagaggcttagtcggaagtcctcgcttaccatcaaaggtctggcga
tccgttcccaggtacgcaattacctggtacgcaattacctggccactaac
cgaaaggtagtctacaatgggctggctcgatactcccagggccttggaga
tactcttctgctgggaaagagaccagccgtgcctccaaccttgaaggata
aaccgaaaaggtcggtcttggaaattgaagataccacaacctcagagggt
agctcgcacctcgaagtacctacagggatcgctatccactgggtagggac
ccaggggcggttctcgaatccgtcgtcggttccaaccccgtacaccggta
cagatcaataccatcgaggaaacaccaaacttggactccacccctcccgt
acaggaggaaaacaccgagcggttggcgtaatggccgaacccaacctgca
atcggaaggccaatatatacccagaaccttgaaggtagaagagaacacgt
cacaaccagttccggtttgtcatatgaagtacaacaactataaagtacgt
gcttcaatgtgtttctccgatcgccttgcggttccggtcacctgcatgtt
ggatacgggggcccgcccaaacgtgctgaactcccgcgtcatacctaagg
cggtacttcggaacttgagccgacctcccgaaaacaacccgctggtggat
gtaaaagagcgcccattaaaccttcgaggtatgctcacccctttggtgca
gctcggacacctcaaggtaagactgcaattctttgttgtcgaccgtttac
cgacagactgcctactaggtacgaccttcattgacagacatgtcaaagca
atccttcctggttcccatacagtcgccctacgtcacgggggacgaatttc
cattttaggtaatacggaaaccaaacggggatggttcgtcaaaccgaaga
agaggatatccaccgaaacggtctccaacaaagtgtgcattaccaaacag
gttgttatcccgccaatgcaccaaatattggtaccggtgtcgtttgcgac
ccccgggctggtcatattacaaaaccatccgaggttggcacattga
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