Gchil2074.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2074.t1
Unique Name	Gchil2074.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	389

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000019_pilon	contig	tig00000019_pilon:397029..398195 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD07558
PFAMs	CpeT
Max annot lvl	2759\|Eukaryota
Evalue	1.66e-33
EggNOG OGs	2CBDP@1\|root,2SAUK@2759\|Eukaryota
Description	CpeT/CpcT family (DUF1001)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2074	Gchil2074	Gracilaria chilensis NLEC103_M9 male	gene	tig00000019_pilon 397029..398195 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2074.t1.start1	Gchil2074.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000019_pilon 397029..397031 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2074.t1.CDS1	Gchil2074.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000019_pilon 397029..398195 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2074.t1.exon1	Gchil2074.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000019_pilon 397029..398195 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2074.t1.stop1	Gchil2074.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000019_pilon 398193..398195 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2074.t1	Gchil2074.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000019_pilon 397029..398195 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000019_pilon:397029..398195+
coding sequence from alignment at tig00000019_pilon:397029..398195+

mRNA sequence

>Gchil2074.t1 ID=Gchil2074.t1|Name=Gchil2074.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=389bp
MSLNSLAFTAHTPLPPSRAPRLPAQPSSHRRSTRPTWLPSHPRATAASSP
SDSPPGGSPPLPHHFTRYGVLTDSVLEIKWRVEQTPPQSSRSRQRQVCYV
DNADLSASDPYKSFARFTRIAAPTVTLGVSRAPRDVSYSSAAIAQRLLQY
AHAKDNLQHFLKFFTGEFDNYDQICGERAQGMYPGEGGGHEHIHCSIKQI
APDLLFAKYYFNGNPRIVFRSRLYQLRARDFSDRGVIEMRILRFYEETER
LLKTANYQIDDIHWDANDVYDWMQGCEVFWERYVPPSDQSDEACQVLGIE
GGARFVGYMKGGGCEVYSRDIGAHIKVMDDLLLTSDDLWVADRGFDLNDQ
FIYGNRLGVPYKMRRVSPGSSCEWTVSKQYSPPEGYIP*

spliced messenger RNA

>Gchil2074.t1 ID=Gchil2074.t1|Name=Gchil2074.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000019_pilon:397029..398195+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCTCAATTCCCTCGCCTTCACCGCACACACCCCGCTACCGCCCTC
ACGAGCCCCCCGCCTTCCCGCCCAACCCAGCTCACACCGCCGCTCCACCC
GTCCCACATGGCTGCCGTCGCATCCGCGCGCCACCGCTGCGTCCAGCCCC
AGCGACTCTCCACCCGGTGGCTCACCTCCCCTCCCGCACCACTTCACTCG
ATACGGCGTTCTCACCGACTCCGTCTTGGAGATAAAATGGAGGGTGGAGC
AAACCCCACCGCAGTCCTCGCGTTCCCGCCAGCGTCAGGTGTGCTATGTG
GACAACGCTGATTTGTCTGCCAGTGATCCGTACAAATCGTTTGCAAGGTT
TACCAGGATTGCCGCCCCGACTGTCACGTTGGGAGTCTCTCGTGCGCCAC
GCGACGTTTCTTACTCCTCCGCCGCAATCGCACAGCGCTTGCTTCAGTAT
GCCCATGCTAAGGATAATTTGCAACATTTCCTCAAGTTCTTTACTGGCGA
GTTTGATAACTATGACCAGATATGTGGGGAGAGGGCACAGGGCATGTATC
CCGGAGAAGGCGGTGGCCATGAGCATATCCATTGTTCGATCAAACAGATT
GCTCCCGATTTGCTGTTTGCCAAGTACTACTTTAATGGAAACCCGCGCAT
TGTGTTCCGCTCGCGCTTGTACCAGCTCCGCGCCAGGGATTTTTCTGATA
GAGGTGTGATTGAAATGAGAATTCTTCGTTTTTATGAGGAAACTGAACGC
CTGTTGAAGACAGCAAACTACCAAATCGATGATATACACTGGGATGCAAA
TGACGTTTATGACTGGATGCAAGGCTGTGAAGTGTTCTGGGAGCGCTATG
TTCCACCGAGTGACCAAAGTGACGAAGCCTGCCAAGTACTTGGTATCGAA
GGGGGTGCCCGTTTTGTCGGATACATGAAAGGGGGCGGTTGTGAGGTTTA
TTCCAGAGATATTGGTGCTCACATCAAGGTAATGGATGACTTGTTGTTGA
CCAGCGACGATTTGTGGGTTGCAGATCGTGGCTTTGACCTTAATGATCAG
TTCATTTACGGGAACCGGCTTGGTGTACCCTATAAAATGAGACGCGTATC
ACCAGGCAGCTCTTGTGAGTGGACTGTGTCAAAGCAATATTCACCACCGG
AAGGGTATATTCCATAG

protein sequence of Gchil2074.t1

>Gchil2074.t1 ID=Gchil2074.t1|Name=Gchil2074.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=389bp
MSLNSLAFTAHTPLPPSRAPRLPAQPSSHRRSTRPTWLPSHPRATAASSP
SDSPPGGSPPLPHHFTRYGVLTDSVLEIKWRVEQTPPQSSRSRQRQVCYV
DNADLSASDPYKSFARFTRIAAPTVTLGVSRAPRDVSYSSAAIAQRLLQY
AHAKDNLQHFLKFFTGEFDNYDQICGERAQGMYPGEGGGHEHIHCSIKQI
APDLLFAKYYFNGNPRIVFRSRLYQLRARDFSDRGVIEMRILRFYEETER
LLKTANYQIDDIHWDANDVYDWMQGCEVFWERYVPPSDQSDEACQVLGIE
GGARFVGYMKGGGCEVYSRDIGAHIKVMDDLLLTSDDLWVADRGFDLNDQ
FIYGNRLGVPYKMRRVSPGSSCEWTVSKQYSPPEGYIP*

mRNA from alignment at tig00000019_pilon:397029..398195+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2074.t1 ID=Gchil2074.t1|Name=Gchil2074.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000019_pilon:397029..398195+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCTCAATTCCCTCGCCTTCACCGCACACACCCCGCTACCGCCCTC
ACGAGCCCCCCGCCTTCCCGCCCAACCCAGCTCACACCGCCGCTCCACCC
GTCCCACATGGCTGCCGTCGCATCCGCGCGCCACCGCTGCGTCCAGCCCC
AGCGACTCTCCACCCGGTGGCTCACCTCCCCTCCCGCACCACTTCACTCG
ATACGGCGTTCTCACCGACTCCGTCTTGGAGATAAAATGGAGGGTGGAGC
AAACCCCACCGCAGTCCTCGCGTTCCCGCCAGCGTCAGGTGTGCTATGTG
GACAACGCTGATTTGTCTGCCAGTGATCCGTACAAATCGTTTGCAAGGTT
TACCAGGATTGCCGCCCCGACTGTCACGTTGGGAGTCTCTCGTGCGCCAC
GCGACGTTTCTTACTCCTCCGCCGCAATCGCACAGCGCTTGCTTCAGTAT
GCCCATGCTAAGGATAATTTGCAACATTTCCTCAAGTTCTTTACTGGCGA
GTTTGATAACTATGACCAGATATGTGGGGAGAGGGCACAGGGCATGTATC
CCGGAGAAGGCGGTGGCCATGAGCATATCCATTGTTCGATCAAACAGATT
GCTCCCGATTTGCTGTTTGCCAAGTACTACTTTAATGGAAACCCGCGCAT
TGTGTTCCGCTCGCGCTTGTACCAGCTCCGCGCCAGGGATTTTTCTGATA
GAGGTGTGATTGAAATGAGAATTCTTCGTTTTTATGAGGAAACTGAACGC
CTGTTGAAGACAGCAAACTACCAAATCGATGATATACACTGGGATGCAAA
TGACGTTTATGACTGGATGCAAGGCTGTGAAGTGTTCTGGGAGCGCTATG
TTCCACCGAGTGACCAAAGTGACGAAGCCTGCCAAGTACTTGGTATCGAA
GGGGGTGCCCGTTTTGTCGGATACATGAAAGGGGGCGGTTGTGAGGTTTA
TTCCAGAGATATTGGTGCTCACATCAAGGTAATGGATGACTTGTTGTTGA
CCAGCGACGATTTGTGGGTTGCAGATCGTGGCTTTGACCTTAATGATCAG
TTCATTTACGGGAACCGGCTTGGTGTACCCTATAAAATGAGACGCGTATC
ACCAGGCAGCTCTTGTGAGTGGACTGTGTCAAAGCAATATTCACCACCGG
AAGGGTATATTCCATAG

Coding sequence (CDS) from alignment at tig00000019_pilon:397029..398195+

>Gchil2074.t1 ID=Gchil2074.t1|Name=Gchil2074.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000019_pilon:397029..398195+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCTCAATTCCCTCGCCTTCACCGCACACACCCCGCTACCGCCCTC
ACGAGCCCCCCGCCTTCCCGCCCAACCCAGCTCACACCGCCGCTCCACCC
GTCCCACATGGCTGCCGTCGCATCCGCGCGCCACCGCTGCGTCCAGCCCC
AGCGACTCTCCACCCGGTGGCTCACCTCCCCTCCCGCACCACTTCACTCG
ATACGGCGTTCTCACCGACTCCGTCTTGGAGATAAAATGGAGGGTGGAGC
AAACCCCACCGCAGTCCTCGCGTTCCCGCCAGCGTCAGGTGTGCTATGTG
GACAACGCTGATTTGTCTGCCAGTGATCCGTACAAATCGTTTGCAAGGTT
TACCAGGATTGCCGCCCCGACTGTCACGTTGGGAGTCTCTCGTGCGCCAC
GCGACGTTTCTTACTCCTCCGCCGCAATCGCACAGCGCTTGCTTCAGTAT
GCCCATGCTAAGGATAATTTGCAACATTTCCTCAAGTTCTTTACTGGCGA
GTTTGATAACTATGACCAGATATGTGGGGAGAGGGCACAGGGCATGTATC
CCGGAGAAGGCGGTGGCCATGAGCATATCCATTGTTCGATCAAACAGATT
GCTCCCGATTTGCTGTTTGCCAAGTACTACTTTAATGGAAACCCGCGCAT
TGTGTTCCGCTCGCGCTTGTACCAGCTCCGCGCCAGGGATTTTTCTGATA
GAGGTGTGATTGAAATGAGAATTCTTCGTTTTTATGAGGAAACTGAACGC
CTGTTGAAGACAGCAAACTACCAAATCGATGATATACACTGGGATGCAAA
TGACGTTTATGACTGGATGCAAGGCTGTGAAGTGTTCTGGGAGCGCTATG
TTCCACCGAGTGACCAAAGTGACGAAGCCTGCCAAGTACTTGGTATCGAA
GGGGGTGCCCGTTTTGTCGGATACATGAAAGGGGGCGGTTGTGAGGTTTA
TTCCAGAGATATTGGTGCTCACATCAAGGTAATGGATGACTTGTTGTTGA
CCAGCGACGATTTGTGGGTTGCAGATCGTGGCTTTGACCTTAATGATCAG
TTCATTTACGGGAACCGGCTTGGTGTACCCTATAAAATGAGACGCGTATC
ACCAGGCAGCTCTTGTGAGTGGACTGTGTCAAAGCAATATTCACCACCGG
AAGGGTATATTCCATAG