Gchil2071.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2071.t1
Unique NameGchil2071.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:391397..392161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog83344.XP_007927081.1
Preferred nameFUR1
PFAMsUPRTase
Max annot lvl4751|Fungi
KEGG rclassRC00063
KEGG koko:K00761
KEGG ReactionR00966
KEGG Pathwayko00240,ko01100,map00240,map01100
GOsGO:0003674,GO:0003824,GO:0004845,GO:0004849,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016757,GO:0016763,GO:0016772,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043094,GO:0043097,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue1.76e-74
EggNOG OGsCOG0572@1|root,KOG4203@2759|Eukaryota,38HIZ@33154|Opisthokonta,3NUU8@4751|Fungi,3QKQZ@4890|Ascomycota,2001Q@147541|Dothideomycetes,3MGC2@451867|Dothideomycetidae
EC2.4.2.9
DescriptionUracil phosphoribosyltransferase
COG categoryTZ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2071Gchil2071Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 391397..392161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2071.t1Gchil2071.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 391397..392161 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2071.t1.stop1Gchil2071.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 391397..391399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2071.t1.CDS1Gchil2071.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 391397..391940 -
Gchil2071.t1.CDS2Gchil2071.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 392019..392161 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2071.t1.exon1Gchil2071.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 391397..391940 -
Gchil2071.t1.exon2Gchil2071.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 392019..392161 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2071.t1.intron1Gchil2071.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000019_pilon 391941..392018 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2071.t1.start1Gchil2071.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 392159..392161 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2071.t1 ID=Gchil2071.t1|Name=Gchil2071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=229bp
MGFDVDGQHWPQLHVHQQTAQLRCLMTTLCDSNCAPSDWVFTADRVNRMM
VEFALNFLPVQPHHVTTPVDAEPLSGVKFAGRIVGVSIVRAGEAMETALR
SCCRNVRLGKILVQRNHSTAAPRYYMARLPHDVATRHVLLMDPMLATGGS
ALVAVDKLLHAGVPERNIVFVNVVAAPEGVRALLTAHPAMQLCTATIADG
LNSQKYIRKSLGDFGDRYYGTHPQLSMD*
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spliced messenger RNA

>Gchil2071.t1 ID=Gchil2071.t1|Name=Gchil2071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=687bp|location=Sequence derived from alignment at tig00000019_pilon:391397..392161- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTTCGACGTCGACGGTCAGCACTGGCCGCAGCTGCACGTGCACCA
ACAGACGGCGCAGCTGCGCTGTCTCATGACGACGCTGTGCGACTCCAACT
GCGCCCCGTCCGACTGGGTTTTCACGGCCGATCGCGTCAATCGTATGATG
GTTGAGTTTGCGCTCAACTTCTTGCCGGTGCAGCCGCACCACGTGACGAC
GCCCGTGGACGCCGAGCCATTGAGCGGCGTCAAGTTTGCAGGCCGCATCG
TAGGTGTGTCCATCGTGCGTGCAGGCGAGGCAATGGAGACAGCGCTTCGG
TCATGTTGTCGAAACGTACGTCTTGGAAAGATTCTAGTACAACGAAATCA
TAGTACAGCCGCCCCACGCTACTACATGGCCAGATTACCACATGATGTTG
CCACGCGTCACGTGTTGCTTATGGACCCCATGTTGGCTACGGGTGGTTCG
GCGCTTGTTGCCGTGGACAAGCTGTTGCATGCCGGAGTGCCCGAGCGTAA
TATTGTGTTTGTCAACGTGGTGGCGGCGCCGGAGGGTGTGCGCGCTTTGC
TCACCGCGCACCCGGCCATGCAGTTGTGTACTGCTACCATTGCCGACGGG
CTCAACTCGCAAAAGTACATACGAAAGTCGTTGGGTGATTTCGGTGACCG
CTACTATGGCACGCATCCGCAGTTATCTATGGATTAA
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protein sequence of Gchil2071.t1

>Gchil2071.t1 ID=Gchil2071.t1|Name=Gchil2071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=229bp
MGFDVDGQHWPQLHVHQQTAQLRCLMTTLCDSNCAPSDWVFTADRVNRMM
VEFALNFLPVQPHHVTTPVDAEPLSGVKFAGRIVGVSIVRAGEAMETALR
SCCRNVRLGKILVQRNHSTAAPRYYMARLPHDVATRHVLLMDPMLATGGS
ALVAVDKLLHAGVPERNIVFVNVVAAPEGVRALLTAHPAMQLCTATIADG
LNSQKYIRKSLGDFGDRYYGTHPQLSMD*
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mRNA from alignment at tig00000019_pilon:391397..392161-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2071.t1 ID=Gchil2071.t1|Name=Gchil2071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000019_pilon:391397..392161- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCTTCGACGTCGACGGTCAGCACTGGCCGCAGCTGCACGTGCACCA
ACAGACGGCGCAGCTGCGCTGTCTCATGACGACGCTGTGCGACTCCAACT
GCGCCCCGTCCGACTGGGTTTTCACGGCCGATCGCGTCAATCGGTGAGTT
GACGTCATATATATATTGTATTCCGCTGCCACCTCCGCTGCCACCTCCCC
TGCCACTAATGTCGTACGTAGTATGATGGTTGAGTTTGCGCTCAACTTCT
TGCCGGTGCAGCCGCACCACGTGACGACGCCCGTGGACGCCGAGCCATTG
AGCGGCGTCAAGTTTGCAGGCCGCATCGTAGGTGTGTCCATCGTGCGTGC
AGGCGAGGCAATGGAGACAGCGCTTCGGTCATGTTGTCGAAACGTACGTC
TTGGAAAGATTCTAGTACAACGAAATCATAGTACAGCCGCCCCACGCTAC
TACATGGCCAGATTACCACATGATGTTGCCACGCGTCACGTGTTGCTTAT
GGACCCCATGTTGGCTACGGGTGGTTCGGCGCTTGTTGCCGTGGACAAGC
TGTTGCATGCCGGAGTGCCCGAGCGTAATATTGTGTTTGTCAACGTGGTG
GCGGCGCCGGAGGGTGTGCGCGCTTTGCTCACCGCGCACCCGGCCATGCA
GTTGTGTACTGCTACCATTGCCGACGGGCTCAACTCGCAAAAGTACATAC
GAAAGTCGTTGGGTGATTTCGGTGACCGCTACTATGGCACGCATCCGCAG
TTATCTATGGATTAA
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Coding sequence (CDS) from alignment at tig00000019_pilon:391397..392161-

>Gchil2071.t1 ID=Gchil2071.t1|Name=Gchil2071.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=687bp|location=Sequence derived from alignment at tig00000019_pilon:391397..392161- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCTTCGACGTCGACGGTCAGCACTGGCCGCAGCTGCACGTGCACCA
ACAGACGGCGCAGCTGCGCTGTCTCATGACGACGCTGTGCGACTCCAACT
GCGCCCCGTCCGACTGGGTTTTCACGGCCGATCGCGTCAATCGTATGATG
GTTGAGTTTGCGCTCAACTTCTTGCCGGTGCAGCCGCACCACGTGACGAC
GCCCGTGGACGCCGAGCCATTGAGCGGCGTCAAGTTTGCAGGCCGCATCG
TAGGTGTGTCCATCGTGCGTGCAGGCGAGGCAATGGAGACAGCGCTTCGG
TCATGTTGTCGAAACGTACGTCTTGGAAAGATTCTAGTACAACGAAATCA
TAGTACAGCCGCCCCACGCTACTACATGGCCAGATTACCACATGATGTTG
CCACGCGTCACGTGTTGCTTATGGACCCCATGTTGGCTACGGGTGGTTCG
GCGCTTGTTGCCGTGGACAAGCTGTTGCATGCCGGAGTGCCCGAGCGTAA
TATTGTGTTTGTCAACGTGGTGGCGGCGCCGGAGGGTGTGCGCGCTTTGC
TCACCGCGCACCCGGCCATGCAGTTGTGTACTGCTACCATTGCCGACGGG
CTCAACTCGCAAAAGTACATACGAAAGTCGTTGGGTGATTTCGGTGACCG
CTACTATGGCACGCATCCGCAGTTATCTATGGATTAA
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