Gchil2067.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2067.t1
Unique Name	Gchil2067.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	303

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000019_pilon	contig	tig00000019_pilon:383396..384304 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705724.1
PFAMs	Mito_carr
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017,RC00425
KEGG ko	ko:K05857,ko:K14684,ko:K15111
KEGG TC	2.A.29.18,2.A.29.23
KEGG Reaction	R03332,R03435,R10952
KEGG Pathway	ko00562,ko01100,ko04020,ko04070,ko04919,ko04933,map00562,map01100,map04020,map04070,map04919,map04933
KEGG Module	M00130
Evalue	6.72e-25
EggNOG OGs	KOG0768@1\|root,KOG0768@2759\|Eukaryota
EC	3.1.4.11
Description	S-adenosyl-L-methionine transmembrane transport
COG category	U
BRITE	ko00000,ko00001,ko00002,ko01000,ko02000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2067	Gchil2067	Gracilaria chilensis NLEC103_M9 male	gene	tig00000019_pilon 383396..384304 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2067.t1.start1	Gchil2067.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000019_pilon 383396..383398 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2067.t1.CDS1	Gchil2067.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000019_pilon 383396..384304 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2067.t1.exon1	Gchil2067.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000019_pilon 383396..384304 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2067.t1.stop1	Gchil2067.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000019_pilon 384302..384304 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2067.t1	Gchil2067.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000019_pilon 383396..384304 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000019_pilon:383396..384304+
coding sequence from alignment at tig00000019_pilon:383396..384304+

mRNA sequence

>Gchil2067.t1 ID=Gchil2067.t1|Name=Gchil2067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=303bp
MTETALDKIQPEKEPIIQQLKLLWNTVQGSVKDGTLPNVAVARLASVLLL
HPLDTFKSRLQQTSATSVRAIGAFARSAPPFSGLPAAVLGQVPYTAVSLA
LFLHLKDRLHQVPERRRMITAALISDSVAALWLTPFESMKLRVQTSVQPC
VRTAFQSGGFYAGLNAQLLRDVPYRSAYLALLTALAIRNERRDVRGTFGS
ACIAAAIGMVTTPLDVIRTRVVSQKVNSAARVYSGALHCANKILKTEGVN
ALFKGVVPRAVYMGASVLVFSAAFSAAERFEKKVWKKKNAAMLSQPSEKD
TN*

spliced messenger RNA

>Gchil2067.t1 ID=Gchil2067.t1|Name=Gchil2067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000019_pilon:383396..384304+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAGACAGCGCTTGACAAGATTCAACCCGAGAAGGAGCCTATTAT
TCAGCAGCTCAAGTTATTATGGAACACTGTTCAAGGCAGTGTCAAAGACG
GAACCTTGCCCAATGTTGCCGTTGCTCGCCTCGCGTCGGTGTTGCTGCTT
CACCCGTTAGACACGTTCAAATCTCGTCTACAACAAACATCCGCCACTTC
TGTGCGTGCCATCGGTGCCTTTGCGCGCAGTGCACCGCCATTCTCAGGCC
TTCCCGCAGCCGTCCTAGGACAGGTACCGTACACAGCTGTATCACTCGCG
CTTTTTCTACATCTCAAAGACCGTTTACATCAAGTACCGGAGAGAAGAAG
AATGATCACCGCCGCGCTGATTTCCGATAGCGTTGCAGCACTGTGGTTGA
CACCGTTTGAAAGCATGAAACTACGAGTGCAAACGAGTGTACAGCCATGT
GTTCGAACGGCATTTCAAAGCGGCGGTTTTTATGCGGGACTCAATGCACA
GCTTTTGAGAGACGTTCCCTATCGAAGCGCGTATCTAGCTCTCCTTACGG
CTCTTGCGATCCGTAACGAACGACGTGATGTACGCGGTACCTTTGGTAGT
GCGTGCATTGCTGCGGCGATTGGAATGGTAACAACACCATTGGACGTGAT
TCGAACAAGAGTGGTGTCTCAAAAGGTAAACAGCGCGGCTCGAGTCTACT
CAGGAGCGTTGCACTGTGCGAACAAGATTCTGAAGACTGAAGGCGTCAAT
GCGTTGTTCAAGGGTGTAGTACCGAGAGCGGTTTACATGGGTGCTAGTGT
TTTGGTTTTCTCTGCAGCTTTTTCAGCGGCGGAACGATTTGAAAAGAAGG
TTTGGAAGAAAAAGAATGCTGCGATGTTATCGCAACCTAGCGAGAAAGAC
ACGAATTGA

protein sequence of Gchil2067.t1

>Gchil2067.t1 ID=Gchil2067.t1|Name=Gchil2067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=303bp
MTETALDKIQPEKEPIIQQLKLLWNTVQGSVKDGTLPNVAVARLASVLLL
HPLDTFKSRLQQTSATSVRAIGAFARSAPPFSGLPAAVLGQVPYTAVSLA
LFLHLKDRLHQVPERRRMITAALISDSVAALWLTPFESMKLRVQTSVQPC
VRTAFQSGGFYAGLNAQLLRDVPYRSAYLALLTALAIRNERRDVRGTFGS
ACIAAAIGMVTTPLDVIRTRVVSQKVNSAARVYSGALHCANKILKTEGVN
ALFKGVVPRAVYMGASVLVFSAAFSAAERFEKKVWKKKNAAMLSQPSEKD
TN*

mRNA from alignment at tig00000019_pilon:383396..384304+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2067.t1 ID=Gchil2067.t1|Name=Gchil2067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000019_pilon:383396..384304+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGAGACAGCGCTTGACAAGATTCAACCCGAGAAGGAGCCTATTAT
TCAGCAGCTCAAGTTATTATGGAACACTGTTCAAGGCAGTGTCAAAGACG
GAACCTTGCCCAATGTTGCCGTTGCTCGCCTCGCGTCGGTGTTGCTGCTT
CACCCGTTAGACACGTTCAAATCTCGTCTACAACAAACATCCGCCACTTC
TGTGCGTGCCATCGGTGCCTTTGCGCGCAGTGCACCGCCATTCTCAGGCC
TTCCCGCAGCCGTCCTAGGACAGGTACCGTACACAGCTGTATCACTCGCG
CTTTTTCTACATCTCAAAGACCGTTTACATCAAGTACCGGAGAGAAGAAG
AATGATCACCGCCGCGCTGATTTCCGATAGCGTTGCAGCACTGTGGTTGA
CACCGTTTGAAAGCATGAAACTACGAGTGCAAACGAGTGTACAGCCATGT
GTTCGAACGGCATTTCAAAGCGGCGGTTTTTATGCGGGACTCAATGCACA
GCTTTTGAGAGACGTTCCCTATCGAAGCGCGTATCTAGCTCTCCTTACGG
CTCTTGCGATCCGTAACGAACGACGTGATGTACGCGGTACCTTTGGTAGT
GCGTGCATTGCTGCGGCGATTGGAATGGTAACAACACCATTGGACGTGAT
TCGAACAAGAGTGGTGTCTCAAAAGGTAAACAGCGCGGCTCGAGTCTACT
CAGGAGCGTTGCACTGTGCGAACAAGATTCTGAAGACTGAAGGCGTCAAT
GCGTTGTTCAAGGGTGTAGTACCGAGAGCGGTTTACATGGGTGCTAGTGT
TTTGGTTTTCTCTGCAGCTTTTTCAGCGGCGGAACGATTTGAAAAGAAGG
TTTGGAAGAAAAAGAATGCTGCGATGTTATCGCAACCTAGCGAGAAAGAC
ACGAATTGA

Coding sequence (CDS) from alignment at tig00000019_pilon:383396..384304+

>Gchil2067.t1 ID=Gchil2067.t1|Name=Gchil2067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000019_pilon:383396..384304+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGAGACAGCGCTTGACAAGATTCAACCCGAGAAGGAGCCTATTAT
TCAGCAGCTCAAGTTATTATGGAACACTGTTCAAGGCAGTGTCAAAGACG
GAACCTTGCCCAATGTTGCCGTTGCTCGCCTCGCGTCGGTGTTGCTGCTT
CACCCGTTAGACACGTTCAAATCTCGTCTACAACAAACATCCGCCACTTC
TGTGCGTGCCATCGGTGCCTTTGCGCGCAGTGCACCGCCATTCTCAGGCC
TTCCCGCAGCCGTCCTAGGACAGGTACCGTACACAGCTGTATCACTCGCG
CTTTTTCTACATCTCAAAGACCGTTTACATCAAGTACCGGAGAGAAGAAG
AATGATCACCGCCGCGCTGATTTCCGATAGCGTTGCAGCACTGTGGTTGA
CACCGTTTGAAAGCATGAAACTACGAGTGCAAACGAGTGTACAGCCATGT
GTTCGAACGGCATTTCAAAGCGGCGGTTTTTATGCGGGACTCAATGCACA
GCTTTTGAGAGACGTTCCCTATCGAAGCGCGTATCTAGCTCTCCTTACGG
CTCTTGCGATCCGTAACGAACGACGTGATGTACGCGGTACCTTTGGTAGT
GCGTGCATTGCTGCGGCGATTGGAATGGTAACAACACCATTGGACGTGAT
TCGAACAAGAGTGGTGTCTCAAAAGGTAAACAGCGCGGCTCGAGTCTACT
CAGGAGCGTTGCACTGTGCGAACAAGATTCTGAAGACTGAAGGCGTCAAT
GCGTTGTTCAAGGGTGTAGTACCGAGAGCGGTTTACATGGGTGCTAGTGT
TTTGGTTTTCTCTGCAGCTTTTTCAGCGGCGGAACGATTTGAAAAGAAGG
TTTGGAAGAAAAAGAATGCTGCGATGTTATCGCAACCTAGCGAGAAAGAC
ACGAATTGA