Gchil2066.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2066.t1
Unique NameGchil2066.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:381809..382666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6334.EFV60666
Preferred nameSLC39A7
PFAMsZip
Max annot lvl33208|Metazoa
KEGG koko:K14713
KEGG TC2.A.5.4.3,2.A.5.4.4,2.A.5.4.7
GOsGO:0000003,GO:0000041,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005801,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0006873,GO:0006875,GO:0006882,GO:0006928,GO:0006950,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0008021,GO:0008150,GO:0008324,GO:0009636,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010312,GO:0010631,GO:0010632,GO:0012505,GO:0015075,GO:0015318,GO:0016020,GO:0016477,GO:0019222,GO:0019725,GO:0019953,GO:0022412,GO:0022414,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030133,GO:0030154,GO:0030234,GO:0030334,GO:0030424,GO:0030707,GO:0030855,GO:0031090,GO:0031323,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0033106,GO:0033238,GO:0034220,GO:0036477,GO:0040011,GO:0040012,GO:0042069,GO:0042175,GO:0042221,GO:0042592,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0044703,GO:0045202,GO:0046873,GO:0046915,GO:0046916,GO:0048468,GO:0048471,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051270,GO:0051674,GO:0051704,GO:0055065,GO:0055069,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060429,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070382,GO:0070838,GO:0071577,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0080090,GO:0090130,GO:0090132,GO:0097038,GO:0097458,GO:0097501,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098754,GO:0098771,GO:0098772,GO:0098793,GO:0098827,GO:0099503,GO:0120025,GO:1990359,GO:2000026,GO:2000145,GO:2000274
Evalue2.07e-28
EggNOG OGsCOG0428@1|root,KOG4642@1|root,KOG2693@2759|Eukaryota,KOG4642@2759|Eukaryota,38FZT@33154|Opisthokonta,3BEK2@33208|Metazoa,3CS6P@33213|Bilateria,40ATZ@6231|Nematoda
DescriptionHistidine-rich membrane protein KE4 homolog
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2066Gchil2066Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 381809..382666 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2066.t1.stop1Gchil2066.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 381809..381811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2066.t1.CDS1Gchil2066.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 381809..382666 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2066.t1.exon1Gchil2066.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 381809..382666 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2066.t1.start1Gchil2066.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 382664..382666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2066.t1Gchil2066.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 381809..382666 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2066.t1 ID=Gchil2066.t1|Name=Gchil2066.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=286bp
MRHSLEPLHNLPPESAAFTASLIASSVSLVSVLLLPFSASLSNILLPFAA
GALLSDLCNHLLPHLYAAAAPVAPLLLGIALFALLDAVLQRFSDHDHSHH
LSSEESVISSPPDHSDLHARKDAYINLAADALHNFCDGLSIAAAFLVSSS
MGIATTIAVILHEIPQELADFAVLLRAGFSRPIAVFANVICACTALLGTF
VALRLRSVSENAHIYILPFAAGALMYMTFCTVLPHVVHDISKPYRIDGKQ
VQISFPRLCCRALLAFSLASIGVFVVSLVEQAHEH*
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spliced messenger RNA

>Gchil2066.t1 ID=Gchil2066.t1|Name=Gchil2066.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000019_pilon:381809..382666- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCACTCATTAGAACCGCTTCACAATTTGCCTCCGGAATCGGCAGC
ATTCACTGCATCACTTATAGCCTCATCTGTCTCACTTGTATCTGTGCTAC
TGCTTCCCTTTTCTGCCTCTCTGTCAAATATTCTTCTCCCATTCGCTGCT
GGAGCGCTTTTGTCAGATCTATGTAACCATCTTTTACCTCATTTATACGC
CGCCGCAGCACCCGTGGCACCGCTTCTTCTTGGCATCGCTCTATTTGCGC
TCTTGGACGCTGTTCTCCAGCGCTTTTCAGATCACGACCACAGCCACCAC
CTGTCATCAGAAGAGTCGGTAATATCCAGTCCACCTGACCATTCCGACCT
ACACGCCCGAAAAGATGCATACATCAATCTAGCTGCCGACGCTTTGCACA
ATTTTTGTGATGGACTCTCTATTGCTGCAGCATTTTTGGTGTCGTCTTCT
ATGGGAATAGCAACCACTATTGCCGTGATCCTCCACGAAATTCCACAGGA
GCTTGCCGACTTTGCCGTCTTATTGAGAGCCGGATTCAGTCGTCCCATCG
CTGTTTTCGCCAATGTAATCTGTGCATGTACAGCGCTGCTAGGAACCTTC
GTCGCGCTGAGACTTCGTTCCGTTTCGGAAAATGCACACATTTACATCTT
GCCCTTCGCAGCCGGTGCTCTAATGTACATGACCTTTTGCACCGTTTTAC
CGCATGTCGTGCACGACATCTCCAAACCATACCGTATTGATGGAAAACAA
GTACAGATATCGTTTCCTCGATTGTGTTGCAGAGCACTACTTGCATTCAG
TTTAGCGAGTATTGGGGTCTTCGTTGTTTCTCTAGTTGAACAAGCGCACG
AGCATTGA
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protein sequence of Gchil2066.t1

>Gchil2066.t1 ID=Gchil2066.t1|Name=Gchil2066.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=286bp
MRHSLEPLHNLPPESAAFTASLIASSVSLVSVLLLPFSASLSNILLPFAA
GALLSDLCNHLLPHLYAAAAPVAPLLLGIALFALLDAVLQRFSDHDHSHH
LSSEESVISSPPDHSDLHARKDAYINLAADALHNFCDGLSIAAAFLVSSS
MGIATTIAVILHEIPQELADFAVLLRAGFSRPIAVFANVICACTALLGTF
VALRLRSVSENAHIYILPFAAGALMYMTFCTVLPHVVHDISKPYRIDGKQ
VQISFPRLCCRALLAFSLASIGVFVVSLVEQAHEH*
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mRNA from alignment at tig00000019_pilon:381809..382666-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2066.t1 ID=Gchil2066.t1|Name=Gchil2066.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000019_pilon:381809..382666- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCACTCATTAGAACCGCTTCACAATTTGCCTCCGGAATCGGCAGC
ATTCACTGCATCACTTATAGCCTCATCTGTCTCACTTGTATCTGTGCTAC
TGCTTCCCTTTTCTGCCTCTCTGTCAAATATTCTTCTCCCATTCGCTGCT
GGAGCGCTTTTGTCAGATCTATGTAACCATCTTTTACCTCATTTATACGC
CGCCGCAGCACCCGTGGCACCGCTTCTTCTTGGCATCGCTCTATTTGCGC
TCTTGGACGCTGTTCTCCAGCGCTTTTCAGATCACGACCACAGCCACCAC
CTGTCATCAGAAGAGTCGGTAATATCCAGTCCACCTGACCATTCCGACCT
ACACGCCCGAAAAGATGCATACATCAATCTAGCTGCCGACGCTTTGCACA
ATTTTTGTGATGGACTCTCTATTGCTGCAGCATTTTTGGTGTCGTCTTCT
ATGGGAATAGCAACCACTATTGCCGTGATCCTCCACGAAATTCCACAGGA
GCTTGCCGACTTTGCCGTCTTATTGAGAGCCGGATTCAGTCGTCCCATCG
CTGTTTTCGCCAATGTAATCTGTGCATGTACAGCGCTGCTAGGAACCTTC
GTCGCGCTGAGACTTCGTTCCGTTTCGGAAAATGCACACATTTACATCTT
GCCCTTCGCAGCCGGTGCTCTAATGTACATGACCTTTTGCACCGTTTTAC
CGCATGTCGTGCACGACATCTCCAAACCATACCGTATTGATGGAAAACAA
GTACAGATATCGTTTCCTCGATTGTGTTGCAGAGCACTACTTGCATTCAG
TTTAGCGAGTATTGGGGTCTTCGTTGTTTCTCTAGTTGAACAAGCGCACG
AGCATTGA
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Coding sequence (CDS) from alignment at tig00000019_pilon:381809..382666-

>Gchil2066.t1 ID=Gchil2066.t1|Name=Gchil2066.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00000019_pilon:381809..382666- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCACTCATTAGAACCGCTTCACAATTTGCCTCCGGAATCGGCAGC
ATTCACTGCATCACTTATAGCCTCATCTGTCTCACTTGTATCTGTGCTAC
TGCTTCCCTTTTCTGCCTCTCTGTCAAATATTCTTCTCCCATTCGCTGCT
GGAGCGCTTTTGTCAGATCTATGTAACCATCTTTTACCTCATTTATACGC
CGCCGCAGCACCCGTGGCACCGCTTCTTCTTGGCATCGCTCTATTTGCGC
TCTTGGACGCTGTTCTCCAGCGCTTTTCAGATCACGACCACAGCCACCAC
CTGTCATCAGAAGAGTCGGTAATATCCAGTCCACCTGACCATTCCGACCT
ACACGCCCGAAAAGATGCATACATCAATCTAGCTGCCGACGCTTTGCACA
ATTTTTGTGATGGACTCTCTATTGCTGCAGCATTTTTGGTGTCGTCTTCT
ATGGGAATAGCAACCACTATTGCCGTGATCCTCCACGAAATTCCACAGGA
GCTTGCCGACTTTGCCGTCTTATTGAGAGCCGGATTCAGTCGTCCCATCG
CTGTTTTCGCCAATGTAATCTGTGCATGTACAGCGCTGCTAGGAACCTTC
GTCGCGCTGAGACTTCGTTCCGTTTCGGAAAATGCACACATTTACATCTT
GCCCTTCGCAGCCGGTGCTCTAATGTACATGACCTTTTGCACCGTTTTAC
CGCATGTCGTGCACGACATCTCCAAACCATACCGTATTGATGGAAAACAA
GTACAGATATCGTTTCCTCGATTGTGTTGCAGAGCACTACTTGCATTCAG
TTTAGCGAGTATTGGGGTCTTCGTTGTTTCTCTAGTTGAACAAGCGCACG
AGCATTGA
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