Gchil2061.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2061.t1
Unique NameGchil2061.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length282
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:368198..369043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1313421.JHBV01000030_gene2183
Preferred namecysQ
PFAMsInositol_P
Max annot lvl976|Bacteroidetes
KEGG rclassRC00078
KEGG koko:K01082
KEGG ReactionR00188,R00508
KEGG Pathwayko00920,ko01100,ko01120,ko01130,map00920,map01100,map01120,map01130
Evalue8.26e-82
EggNOG OGsCOG1218@1|root,COG1218@2|Bacteria,4NFHY@976|Bacteroidetes,1ISXY@117747|Sphingobacteriia
EC3.1.3.7
DescriptionCOG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase
COG categoryP
BRITEko00000,ko00001,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2061Gchil2061Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 368198..369043 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2061.t1.stop1Gchil2061.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 368198..368200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2061.t1.CDS1Gchil2061.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 368198..369043 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2061.t1.exon1Gchil2061.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 368198..369043 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2061.t1.start1Gchil2061.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 369041..369043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2061.t1Gchil2061.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 368198..369043 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2061.t1 ID=Gchil2061.t1|Name=Gchil2061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=282bp
MSASITVCGEDVALAPIIDIAIKAGDAILNIYEKPTENWGMQSKSDDSPL
TKADLAANEVICASLKSIHSFPIMSEEMKAAPFEERSAWPAYWCVDPLDG
TKEFIKRNGEFTVNIALMQAVDPSDASLGARPVLGVVYAPVLKICYSAAL
DCGAFMNTVGSLPISMKCKTFSEKDENLVLVCSRSHLDERTKKYVSSFKN
ATTKSMGSSLKFMLVASGEAHIYPRMAPTMEWDTAASQIVVEEAGGQVLH
AETDKPLSYNKEELRNPYFYVFGRRIEQATQ*
back to top

spliced messenger RNA

>Gchil2061.t1 ID=Gchil2061.t1|Name=Gchil2061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000019_pilon:368198..369043- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCTTCTATCACAGTATGTGGCGAGGATGTCGCGCTTGCCCCCAT
CATTGATATCGCCATAAAAGCTGGGGACGCAATCCTCAATATTTACGAGA
AGCCTACAGAGAACTGGGGTATGCAATCAAAGAGTGATGATTCGCCTCTC
ACTAAAGCGGATCTAGCTGCCAACGAGGTAATTTGCGCCAGTCTCAAATC
TATCCATTCATTTCCGATTATGTCAGAGGAGATGAAGGCCGCTCCATTCG
AGGAAAGGTCTGCGTGGCCTGCGTATTGGTGCGTCGATCCTTTGGACGGG
ACCAAGGAATTCATCAAAAGAAATGGAGAGTTCACGGTTAACATTGCTCT
GATGCAAGCTGTGGATCCATCCGATGCTTCTCTCGGAGCACGCCCAGTTC
TTGGCGTGGTGTATGCACCAGTTTTGAAAATTTGTTACTCTGCTGCACTT
GATTGCGGAGCGTTTATGAACACTGTGGGTTCGTTACCAATTTCAATGAA
ATGCAAGACTTTCTCAGAGAAGGATGAAAATCTTGTGCTGGTTTGCTCCA
GAAGCCATTTGGACGAGCGCACGAAGAAATACGTCAGCTCATTCAAGAAT
GCAACCACGAAGAGCATGGGAAGCAGCCTCAAATTTATGCTCGTCGCCAG
TGGAGAGGCCCACATCTATCCCAGGATGGCACCAACGATGGAGTGGGACA
CCGCTGCGAGTCAAATTGTAGTCGAAGAGGCGGGAGGTCAAGTTCTCCAT
GCGGAAACGGACAAACCACTGAGTTACAACAAAGAGGAACTGAGAAATCC
CTACTTCTATGTTTTTGGAAGACGAATCGAGCAAGCAACGCAGTAG
back to top

protein sequence of Gchil2061.t1

>Gchil2061.t1 ID=Gchil2061.t1|Name=Gchil2061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=282bp
MSASITVCGEDVALAPIIDIAIKAGDAILNIYEKPTENWGMQSKSDDSPL
TKADLAANEVICASLKSIHSFPIMSEEMKAAPFEERSAWPAYWCVDPLDG
TKEFIKRNGEFTVNIALMQAVDPSDASLGARPVLGVVYAPVLKICYSAAL
DCGAFMNTVGSLPISMKCKTFSEKDENLVLVCSRSHLDERTKKYVSSFKN
ATTKSMGSSLKFMLVASGEAHIYPRMAPTMEWDTAASQIVVEEAGGQVLH
AETDKPLSYNKEELRNPYFYVFGRRIEQATQ*
back to top

mRNA from alignment at tig00000019_pilon:368198..369043-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2061.t1 ID=Gchil2061.t1|Name=Gchil2061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000019_pilon:368198..369043- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCTTCTATCACAGTATGTGGCGAGGATGTCGCGCTTGCCCCCAT
CATTGATATCGCCATAAAAGCTGGGGACGCAATCCTCAATATTTACGAGA
AGCCTACAGAGAACTGGGGTATGCAATCAAAGAGTGATGATTCGCCTCTC
ACTAAAGCGGATCTAGCTGCCAACGAGGTAATTTGCGCCAGTCTCAAATC
TATCCATTCATTTCCGATTATGTCAGAGGAGATGAAGGCCGCTCCATTCG
AGGAAAGGTCTGCGTGGCCTGCGTATTGGTGCGTCGATCCTTTGGACGGG
ACCAAGGAATTCATCAAAAGAAATGGAGAGTTCACGGTTAACATTGCTCT
GATGCAAGCTGTGGATCCATCCGATGCTTCTCTCGGAGCACGCCCAGTTC
TTGGCGTGGTGTATGCACCAGTTTTGAAAATTTGTTACTCTGCTGCACTT
GATTGCGGAGCGTTTATGAACACTGTGGGTTCGTTACCAATTTCAATGAA
ATGCAAGACTTTCTCAGAGAAGGATGAAAATCTTGTGCTGGTTTGCTCCA
GAAGCCATTTGGACGAGCGCACGAAGAAATACGTCAGCTCATTCAAGAAT
GCAACCACGAAGAGCATGGGAAGCAGCCTCAAATTTATGCTCGTCGCCAG
TGGAGAGGCCCACATCTATCCCAGGATGGCACCAACGATGGAGTGGGACA
CCGCTGCGAGTCAAATTGTAGTCGAAGAGGCGGGAGGTCAAGTTCTCCAT
GCGGAAACGGACAAACCACTGAGTTACAACAAAGAGGAACTGAGAAATCC
CTACTTCTATGTTTTTGGAAGACGAATCGAGCAAGCAACGCAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000019_pilon:368198..369043-

>Gchil2061.t1 ID=Gchil2061.t1|Name=Gchil2061.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=846bp|location=Sequence derived from alignment at tig00000019_pilon:368198..369043- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCTTCTATCACAGTATGTGGCGAGGATGTCGCGCTTGCCCCCAT
CATTGATATCGCCATAAAAGCTGGGGACGCAATCCTCAATATTTACGAGA
AGCCTACAGAGAACTGGGGTATGCAATCAAAGAGTGATGATTCGCCTCTC
ACTAAAGCGGATCTAGCTGCCAACGAGGTAATTTGCGCCAGTCTCAAATC
TATCCATTCATTTCCGATTATGTCAGAGGAGATGAAGGCCGCTCCATTCG
AGGAAAGGTCTGCGTGGCCTGCGTATTGGTGCGTCGATCCTTTGGACGGG
ACCAAGGAATTCATCAAAAGAAATGGAGAGTTCACGGTTAACATTGCTCT
GATGCAAGCTGTGGATCCATCCGATGCTTCTCTCGGAGCACGCCCAGTTC
TTGGCGTGGTGTATGCACCAGTTTTGAAAATTTGTTACTCTGCTGCACTT
GATTGCGGAGCGTTTATGAACACTGTGGGTTCGTTACCAATTTCAATGAA
ATGCAAGACTTTCTCAGAGAAGGATGAAAATCTTGTGCTGGTTTGCTCCA
GAAGCCATTTGGACGAGCGCACGAAGAAATACGTCAGCTCATTCAAGAAT
GCAACCACGAAGAGCATGGGAAGCAGCCTCAAATTTATGCTCGTCGCCAG
TGGAGAGGCCCACATCTATCCCAGGATGGCACCAACGATGGAGTGGGACA
CCGCTGCGAGTCAAATTGTAGTCGAAGAGGCGGGAGGTCAAGTTCTCCAT
GCGGAAACGGACAAACCACTGAGTTACAACAAAGAGGAACTGAGAAATCC
CTACTTCTATGTTTTTGGAAGACGAATCGAGCAAGCAACGCAGTAG
back to top