Gchil2059.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2059.t1
Unique NameGchil2059.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length695
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:362875..364959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000011236
Preferred nameKLHL35
PFAMsBACK,BTB,Kelch_1
Max annot lvl33208|Metazoa
KEGG koko:K10461,ko:K13959
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0031461,GO:0031463,GO:0032991,GO:0044424,GO:0044464,GO:1902494,GO:1990234
Evalue3.48e-10
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota,39S8Z@33154|Opisthokonta,3BAA4@33208|Metazoa,3CU4E@33213|Bilateria,481B9@7711|Chordata,4924D@7742|Vertebrata,4CAI9@8459|Testudines
DescriptionBTB And C-terminal Kelch
COG categoryT
BRITEko00000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2059Gchil2059Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 362875..364959 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2059.t1.stop1Gchil2059.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 362875..362877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2059.t1.CDS1Gchil2059.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 362875..364959 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2059.t1.exon1Gchil2059.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 362875..364959 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2059.t1.start1Gchil2059.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 364957..364959 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2059.t1Gchil2059.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 362875..364959 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2059.t1 ID=Gchil2059.t1|Name=Gchil2059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=695bp
MNTVLHARIPVRNPGPSPWKASLGCSWRLCANRSRPNVVALSLHVIRHQI
ESSTFIVVNVEYPDIASQPMQNLYVARKLPRHPRDVRLQMQCGEQSRVIQ
LPLSYVPSWENDISLKIEVCIEEQPTSPTAVRDSFFSQSIKFDSRRQPSS
PARPRQFDSQTCFQFGKNRILSPSPKPTCISWIGERDRSSSGAKQSRASF
FFDKRSENNNTSNDKARELMYHRSIGTNMIHLPPNCKENSLPCGSGRKPT
TVAGQRGHNFSDFILIVKRDGEDDVEFNLHRRVLSMTSSVFRAMFTSRMR
ESLTGRVEISSFDVSTISLAVRHMYGENIFSSVEPKAFEVYKFGHQYDVS
SLVEVSREVMLAMISIWTCTGILNFGIFFDDDKLVQQASAYMLEHFSEIV
SVNETKQMLCSLSPTVFLALLDSDMLIATELEIFLVGMEWFSYHKKIIGI
VEIIRRVRWPFMTESMFRKAMSSQLISEFRALRSLLKSSRTTISQHLNGT
IPRRRHIFGQPMVIVPVPAIRQPPAALSFVPTVDVTKNSNAGGRINRHNI
QKLDLFSRQEQMFNHEDLVWIFRAELNNCKSQSCSHQCLSVSLWLEQDET
GSVSKWKHQDINGSHLFPIRVKARCMVWNNMGGQLHHNVIDFTFRSSGWA
SGWCVQDVLGGHDRTNAFFERLESNRNAGSVLQVAVEILKCEKG*
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spliced messenger RNA

>Gchil2059.t1 ID=Gchil2059.t1|Name=Gchil2059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2085bp|location=Sequence derived from alignment at tig00000019_pilon:362875..364959- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATACCGTGCTCCATGCTCGTATTCCAGTTCGAAATCCCGGTCCCTC
GCCCTGGAAGGCTAGCCTAGGCTGCTCATGGCGCTTGTGCGCAAACCGAA
GTCGTCCAAACGTCGTGGCCCTTTCGCTACATGTTATCAGGCATCAAATA
GAATCATCCACTTTCATCGTCGTGAATGTTGAATACCCAGACATTGCATC
GCAACCCATGCAAAATTTATATGTCGCTCGGAAATTACCGAGACATCCTC
GAGACGTAAGACTTCAAATGCAATGCGGAGAACAATCAAGAGTTATACAG
TTGCCATTGTCTTATGTCCCTTCTTGGGAAAACGATATTTCACTCAAGAT
AGAGGTTTGTATTGAAGAACAGCCCACATCCCCAACTGCAGTTCGAGACA
GTTTCTTTTCACAATCGATAAAATTCGACTCGCGACGTCAGCCTTCATCT
CCGGCCAGGCCTCGACAATTCGATTCACAAACCTGTTTTCAGTTTGGAAA
AAACCGCATTCTTTCTCCATCACCAAAACCCACATGCATATCGTGGATTG
GTGAACGAGACCGCTCGTCTTCAGGAGCCAAGCAATCAAGAGCTTCGTTC
TTCTTTGACAAAAGATCTGAGAACAACAATACATCAAACGATAAAGCCCG
AGAATTGATGTATCACAGGAGTATTGGCACAAATATGATCCATTTACCTC
CAAACTGCAAAGAAAACTCCCTTCCTTGCGGGAGCGGACGGAAACCCACA
ACAGTGGCAGGTCAAAGGGGTCACAATTTCTCCGACTTCATTCTGATTGT
CAAGCGAGATGGAGAGGATGATGTGGAGTTCAACCTACATCGGCGTGTTC
TTTCTATGACATCTTCTGTGTTTCGAGCAATGTTCACGAGCAGAATGCGC
GAAAGCCTGACTGGGCGTGTAGAAATATCCTCTTTTGATGTTTCTACAAT
TAGTCTTGCAGTTCGTCATATGTACGGAGAGAACATTTTCAGTTCGGTCG
AGCCCAAGGCATTTGAAGTGTATAAATTTGGCCATCAGTACGACGTCTCG
AGCCTGGTAGAAGTTTCACGGGAAGTGATGCTGGCCATGATTTCTATTTG
GACTTGCACTGGGATCCTAAACTTTGGTATTTTCTTCGACGATGACAAGC
TTGTGCAACAGGCCTCAGCCTACATGTTGGAACACTTCTCGGAAATTGTA
TCGGTGAATGAAACCAAGCAAATGCTCTGCTCTCTTTCGCCAACAGTTTT
TCTTGCTCTTCTCGATTCAGATATGTTGATAGCGACAGAGTTAGAAATCT
TCCTCGTTGGTATGGAATGGTTTTCGTACCATAAGAAGATTATTGGAATT
GTGGAGATTATTCGAAGAGTACGCTGGCCGTTCATGACCGAGAGCATGTT
TCGGAAAGCGATGAGCTCTCAGCTGATCTCTGAATTCCGAGCTCTGCGAA
GTTTATTAAAGTCATCCCGGACAACAATATCTCAACATTTGAATGGGACC
ATACCTCGAAGACGACATATATTTGGTCAACCAATGGTTATAGTTCCAGT
TCCAGCCATTCGTCAACCGCCAGCAGCGCTTTCATTTGTGCCGACAGTCG
ATGTCACCAAAAACTCAAATGCTGGGGGACGTATTAATCGTCACAATATC
CAAAAGCTGGATCTCTTTTCTAGACAAGAGCAGATGTTTAACCATGAGGA
TTTGGTTTGGATATTCCGAGCAGAACTCAACAACTGCAAATCGCAAAGCT
GCTCGCATCAATGCTTGTCAGTTAGTCTTTGGCTGGAGCAGGATGAGACA
GGCTCTGTCTCAAAATGGAAGCACCAAGATATAAATGGTTCGCATCTGTT
TCCCATAAGGGTGAAGGCGAGATGCATGGTATGGAATAATATGGGAGGAC
AGCTACATCATAACGTCATAGATTTCACGTTTCGGTCGTCAGGCTGGGCT
AGTGGATGGTGCGTACAAGATGTGCTTGGCGGTCATGACCGAACTAACGC
CTTCTTTGAAAGGCTTGAATCAAATCGGAATGCGGGGTCTGTCTTACAAG
TTGCCGTGGAGATCCTGAAGTGCGAGAAGGGGTGA
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protein sequence of Gchil2059.t1

>Gchil2059.t1 ID=Gchil2059.t1|Name=Gchil2059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=695bp
MNTVLHARIPVRNPGPSPWKASLGCSWRLCANRSRPNVVALSLHVIRHQI
ESSTFIVVNVEYPDIASQPMQNLYVARKLPRHPRDVRLQMQCGEQSRVIQ
LPLSYVPSWENDISLKIEVCIEEQPTSPTAVRDSFFSQSIKFDSRRQPSS
PARPRQFDSQTCFQFGKNRILSPSPKPTCISWIGERDRSSSGAKQSRASF
FFDKRSENNNTSNDKARELMYHRSIGTNMIHLPPNCKENSLPCGSGRKPT
TVAGQRGHNFSDFILIVKRDGEDDVEFNLHRRVLSMTSSVFRAMFTSRMR
ESLTGRVEISSFDVSTISLAVRHMYGENIFSSVEPKAFEVYKFGHQYDVS
SLVEVSREVMLAMISIWTCTGILNFGIFFDDDKLVQQASAYMLEHFSEIV
SVNETKQMLCSLSPTVFLALLDSDMLIATELEIFLVGMEWFSYHKKIIGI
VEIIRRVRWPFMTESMFRKAMSSQLISEFRALRSLLKSSRTTISQHLNGT
IPRRRHIFGQPMVIVPVPAIRQPPAALSFVPTVDVTKNSNAGGRINRHNI
QKLDLFSRQEQMFNHEDLVWIFRAELNNCKSQSCSHQCLSVSLWLEQDET
GSVSKWKHQDINGSHLFPIRVKARCMVWNNMGGQLHHNVIDFTFRSSGWA
SGWCVQDVLGGHDRTNAFFERLESNRNAGSVLQVAVEILKCEKG*
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mRNA from alignment at tig00000019_pilon:362875..364959-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2059.t1 ID=Gchil2059.t1|Name=Gchil2059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2085bp|location=Sequence derived from alignment at tig00000019_pilon:362875..364959- (Gracilaria chilensis NLEC103_M9 male)
ATGAATACCGTGCTCCATGCTCGTATTCCAGTTCGAAATCCCGGTCCCTC
GCCCTGGAAGGCTAGCCTAGGCTGCTCATGGCGCTTGTGCGCAAACCGAA
GTCGTCCAAACGTCGTGGCCCTTTCGCTACATGTTATCAGGCATCAAATA
GAATCATCCACTTTCATCGTCGTGAATGTTGAATACCCAGACATTGCATC
GCAACCCATGCAAAATTTATATGTCGCTCGGAAATTACCGAGACATCCTC
GAGACGTAAGACTTCAAATGCAATGCGGAGAACAATCAAGAGTTATACAG
TTGCCATTGTCTTATGTCCCTTCTTGGGAAAACGATATTTCACTCAAGAT
AGAGGTTTGTATTGAAGAACAGCCCACATCCCCAACTGCAGTTCGAGACA
GTTTCTTTTCACAATCGATAAAATTCGACTCGCGACGTCAGCCTTCATCT
CCGGCCAGGCCTCGACAATTCGATTCACAAACCTGTTTTCAGTTTGGAAA
AAACCGCATTCTTTCTCCATCACCAAAACCCACATGCATATCGTGGATTG
GTGAACGAGACCGCTCGTCTTCAGGAGCCAAGCAATCAAGAGCTTCGTTC
TTCTTTGACAAAAGATCTGAGAACAACAATACATCAAACGATAAAGCCCG
AGAATTGATGTATCACAGGAGTATTGGCACAAATATGATCCATTTACCTC
CAAACTGCAAAGAAAACTCCCTTCCTTGCGGGAGCGGACGGAAACCCACA
ACAGTGGCAGGTCAAAGGGGTCACAATTTCTCCGACTTCATTCTGATTGT
CAAGCGAGATGGAGAGGATGATGTGGAGTTCAACCTACATCGGCGTGTTC
TTTCTATGACATCTTCTGTGTTTCGAGCAATGTTCACGAGCAGAATGCGC
GAAAGCCTGACTGGGCGTGTAGAAATATCCTCTTTTGATGTTTCTACAAT
TAGTCTTGCAGTTCGTCATATGTACGGAGAGAACATTTTCAGTTCGGTCG
AGCCCAAGGCATTTGAAGTGTATAAATTTGGCCATCAGTACGACGTCTCG
AGCCTGGTAGAAGTTTCACGGGAAGTGATGCTGGCCATGATTTCTATTTG
GACTTGCACTGGGATCCTAAACTTTGGTATTTTCTTCGACGATGACAAGC
TTGTGCAACAGGCCTCAGCCTACATGTTGGAACACTTCTCGGAAATTGTA
TCGGTGAATGAAACCAAGCAAATGCTCTGCTCTCTTTCGCCAACAGTTTT
TCTTGCTCTTCTCGATTCAGATATGTTGATAGCGACAGAGTTAGAAATCT
TCCTCGTTGGTATGGAATGGTTTTCGTACCATAAGAAGATTATTGGAATT
GTGGAGATTATTCGAAGAGTACGCTGGCCGTTCATGACCGAGAGCATGTT
TCGGAAAGCGATGAGCTCTCAGCTGATCTCTGAATTCCGAGCTCTGCGAA
GTTTATTAAAGTCATCCCGGACAACAATATCTCAACATTTGAATGGGACC
ATACCTCGAAGACGACATATATTTGGTCAACCAATGGTTATAGTTCCAGT
TCCAGCCATTCGTCAACCGCCAGCAGCGCTTTCATTTGTGCCGACAGTCG
ATGTCACCAAAAACTCAAATGCTGGGGGACGTATTAATCGTCACAATATC
CAAAAGCTGGATCTCTTTTCTAGACAAGAGCAGATGTTTAACCATGAGGA
TTTGGTTTGGATATTCCGAGCAGAACTCAACAACTGCAAATCGCAAAGCT
GCTCGCATCAATGCTTGTCAGTTAGTCTTTGGCTGGAGCAGGATGAGACA
GGCTCTGTCTCAAAATGGAAGCACCAAGATATAAATGGTTCGCATCTGTT
TCCCATAAGGGTGAAGGCGAGATGCATGGTATGGAATAATATGGGAGGAC
AGCTACATCATAACGTCATAGATTTCACGTTTCGGTCGTCAGGCTGGGCT
AGTGGATGGTGCGTACAAGATGTGCTTGGCGGTCATGACCGAACTAACGC
CTTCTTTGAAAGGCTTGAATCAAATCGGAATGCGGGGTCTGTCTTACAAG
TTGCCGTGGAGATCCTGAAGTGCGAGAAGGGGTGA
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Coding sequence (CDS) from alignment at tig00000019_pilon:362875..364959-

>Gchil2059.t1 ID=Gchil2059.t1|Name=Gchil2059.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2085bp|location=Sequence derived from alignment at tig00000019_pilon:362875..364959- (Gracilaria chilensis NLEC103_M9 male)
ATGAATACCGTGCTCCATGCTCGTATTCCAGTTCGAAATCCCGGTCCCTC
GCCCTGGAAGGCTAGCCTAGGCTGCTCATGGCGCTTGTGCGCAAACCGAA
GTCGTCCAAACGTCGTGGCCCTTTCGCTACATGTTATCAGGCATCAAATA
GAATCATCCACTTTCATCGTCGTGAATGTTGAATACCCAGACATTGCATC
GCAACCCATGCAAAATTTATATGTCGCTCGGAAATTACCGAGACATCCTC
GAGACGTAAGACTTCAAATGCAATGCGGAGAACAATCAAGAGTTATACAG
TTGCCATTGTCTTATGTCCCTTCTTGGGAAAACGATATTTCACTCAAGAT
AGAGGTTTGTATTGAAGAACAGCCCACATCCCCAACTGCAGTTCGAGACA
GTTTCTTTTCACAATCGATAAAATTCGACTCGCGACGTCAGCCTTCATCT
CCGGCCAGGCCTCGACAATTCGATTCACAAACCTGTTTTCAGTTTGGAAA
AAACCGCATTCTTTCTCCATCACCAAAACCCACATGCATATCGTGGATTG
GTGAACGAGACCGCTCGTCTTCAGGAGCCAAGCAATCAAGAGCTTCGTTC
TTCTTTGACAAAAGATCTGAGAACAACAATACATCAAACGATAAAGCCCG
AGAATTGATGTATCACAGGAGTATTGGCACAAATATGATCCATTTACCTC
CAAACTGCAAAGAAAACTCCCTTCCTTGCGGGAGCGGACGGAAACCCACA
ACAGTGGCAGGTCAAAGGGGTCACAATTTCTCCGACTTCATTCTGATTGT
CAAGCGAGATGGAGAGGATGATGTGGAGTTCAACCTACATCGGCGTGTTC
TTTCTATGACATCTTCTGTGTTTCGAGCAATGTTCACGAGCAGAATGCGC
GAAAGCCTGACTGGGCGTGTAGAAATATCCTCTTTTGATGTTTCTACAAT
TAGTCTTGCAGTTCGTCATATGTACGGAGAGAACATTTTCAGTTCGGTCG
AGCCCAAGGCATTTGAAGTGTATAAATTTGGCCATCAGTACGACGTCTCG
AGCCTGGTAGAAGTTTCACGGGAAGTGATGCTGGCCATGATTTCTATTTG
GACTTGCACTGGGATCCTAAACTTTGGTATTTTCTTCGACGATGACAAGC
TTGTGCAACAGGCCTCAGCCTACATGTTGGAACACTTCTCGGAAATTGTA
TCGGTGAATGAAACCAAGCAAATGCTCTGCTCTCTTTCGCCAACAGTTTT
TCTTGCTCTTCTCGATTCAGATATGTTGATAGCGACAGAGTTAGAAATCT
TCCTCGTTGGTATGGAATGGTTTTCGTACCATAAGAAGATTATTGGAATT
GTGGAGATTATTCGAAGAGTACGCTGGCCGTTCATGACCGAGAGCATGTT
TCGGAAAGCGATGAGCTCTCAGCTGATCTCTGAATTCCGAGCTCTGCGAA
GTTTATTAAAGTCATCCCGGACAACAATATCTCAACATTTGAATGGGACC
ATACCTCGAAGACGACATATATTTGGTCAACCAATGGTTATAGTTCCAGT
TCCAGCCATTCGTCAACCGCCAGCAGCGCTTTCATTTGTGCCGACAGTCG
ATGTCACCAAAAACTCAAATGCTGGGGGACGTATTAATCGTCACAATATC
CAAAAGCTGGATCTCTTTTCTAGACAAGAGCAGATGTTTAACCATGAGGA
TTTGGTTTGGATATTCCGAGCAGAACTCAACAACTGCAAATCGCAAAGCT
GCTCGCATCAATGCTTGTCAGTTAGTCTTTGGCTGGAGCAGGATGAGACA
GGCTCTGTCTCAAAATGGAAGCACCAAGATATAAATGGTTCGCATCTGTT
TCCCATAAGGGTGAAGGCGAGATGCATGGTATGGAATAATATGGGAGGAC
AGCTACATCATAACGTCATAGATTTCACGTTTCGGTCGTCAGGCTGGGCT
AGTGGATGGTGCGTACAAGATGTGCTTGGCGGTCATGACCGAACTAACGC
CTTCTTTGAAAGGCTTGAATCAAATCGGAATGCGGGGTCTGTCTTACAAG
TTGCCGTGGAGATCCTGAAGTGCGAGAAGGGGTGA
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