Gchil2052.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2052.t1
Unique Name	Gchil2052.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	729

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000019_pilon	contig	tig00000019_pilon:313053..315239 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	50452.A0A087H7I4
PFAMs	Peptidase_C48
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K08592
GOs	GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005911,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009506,GO:0009909,GO:0009911,GO:0009987,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0030054,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048518,GO:0048580,GO:0048582,GO:0048831,GO:0050789,GO:0050793,GO:0051094,GO:0051239,GO:0051240,GO:0055044,GO:0065007,GO:0070011,GO:0070122,GO:0070137,GO:0070138,GO:0070139,GO:0070140,GO:0070646,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:2000026,GO:2000241,GO:2000243
Evalue	2.98e-29
EggNOG OGs	COG5160@1\|root,KOG0778@2759\|Eukaryota,37MNB@33090\|Viridiplantae,3GH6S@35493\|Streptophyta,3HZN7@3699\|Brassicales
EC	3.4.22.68
Description	protease 1a
COG category	O
BRITE	ko00000,ko01000,ko01002,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2052	Gchil2052	Gracilaria chilensis NLEC103_M9 male	gene	tig00000019_pilon 313053..315239 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2052.t1.start1	Gchil2052.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000019_pilon 313053..313055 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2052.t1.CDS1	Gchil2052.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000019_pilon 313053..315239 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2052.t1.exon1	Gchil2052.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000019_pilon 313053..315239 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2052.t1.stop1	Gchil2052.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000019_pilon 315237..315239 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2052.t1	Gchil2052.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000019_pilon 313053..315239 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000019_pilon:313053..315239+
coding sequence from alignment at tig00000019_pilon:313053..315239+

mRNA sequence

>Gchil2052.t1 ID=Gchil2052.t1|Name=Gchil2052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=729bp
MGNDSTHTNRQSNLFSPPLQQPQRCSPPPMLGRLQDAMYASKLKTSERLG
IIHLNAKKRLNAGHRSKMAADQSRQKRQKRQELEQIRERRNAELQQKWYI
ERARMARARIANRRHESDVIDLTQTREHDPDFDPKVEEDEDVTHITTKAR
RSKSRLREKIKVRPSDAVAYEKAHEVASACSTPPRSSPTEGMEDKEKENI
ISLLSSDDEKNKTSRLKLCRPKRQRPQKQRMKNQRQTVLFGLPVSDCAFD
PPSSDNAEEKPPPTPRINSTAERLKSPLHQIESDIEVELLRVEKSAKQKS
DTKIHGPAHDGNALELKISALPAFPEQISNTKLDSVVESSDVESSVQLIQ
DTPFKAGMKRISEKRTIPAQSFYGTKKHANGSRAGTIDVPALKHEVNDKF
HSQEIIQLELSDDEEDDVIECEPITKNGSIFTLDDYEMPGFFAKEEPSFE
TDVKRARDIRFRRLDPEELVILSSLTDQVPKQFVLSRIEEANIGLKGEDF
ARLRGSRWLNDELLNSFVALINSRNRRDVLRESNFENEEIEYSIDVDAPQ
EGLYSIFSRKRPRTHVFNTFFFPRLTQKGYDYSGVKRWLKRAGLSVKSLD
LILIPINLNNFHWVLTAIDLRSKHFLYLDSTFGKDTSETIPILKKWLFDE
VKDKHGIVAAEKMGINLWPVHINPPYLPRQQDGGSCGIFTLYMADYLERG
LCPNFTQDDIRTLRRRTALFLNDGRLPN*

spliced messenger RNA

>Gchil2052.t1 ID=Gchil2052.t1|Name=Gchil2052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2187bp|location=Sequence derived from alignment at tig00000019_pilon:313053..315239+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAACGATTCCACTCATACCAATCGCCAGAGTAACCTCTTTTCCCC
TCCACTTCAACAGCCCCAGCGCTGTTCGCCGCCCCCGATGCTTGGCCGCT
TGCAGGACGCTATGTACGCCTCAAAACTAAAGACCAGTGAGAGACTCGGA
ATCATTCACCTGAACGCAAAGAAGCGTCTTAACGCCGGCCATCGAAGCAA
AATGGCTGCAGACCAATCGCGCCAGAAGCGCCAGAAGCGACAGGAACTCG
AACAGATTCGAGAACGAAGAAACGCTGAACTGCAACAGAAGTGGTATATT
GAACGGGCGAGAATGGCACGCGCTAGAATAGCAAATCGTCGCCATGAGAG
CGACGTTATTGATCTCACCCAAACAAGGGAACACGATCCAGATTTTGACC
CAAAAGTTGAAGAGGATGAAGATGTAACGCATATAACAACGAAGGCGCGC
CGTTCGAAAAGCCGTTTAAGAGAGAAGATTAAAGTTCGGCCTTCTGACGC
TGTTGCATATGAAAAAGCGCACGAAGTCGCATCTGCATGTAGCACTCCCC
CACGCTCTTCACCAACTGAAGGAATGGAAGATAAAGAAAAGGAAAATATC
ATATCTCTGTTGTCATCTGATGATGAAAAGAATAAAACTTCGCGACTGAA
ACTGTGTCGACCGAAGAGACAGCGACCGCAGAAACAACGAATGAAGAATC
AGCGACAAACAGTTCTATTTGGTTTGCCTGTGTCTGACTGTGCGTTTGAT
CCGCCAAGCTCTGATAACGCAGAAGAGAAACCACCTCCCACGCCAAGAAT
CAATTCTACAGCGGAGCGGTTAAAAAGTCCACTCCATCAAATAGAAAGCG
ATATTGAGGTTGAACTCCTCAGAGTGGAAAAGTCAGCCAAACAAAAGAGC
GACACCAAAATACATGGTCCCGCTCATGACGGAAATGCTCTTGAGCTAAA
AATCAGTGCTCTACCAGCGTTTCCAGAGCAAATTAGCAACACGAAACTGG
ACAGTGTTGTCGAAAGCTCCGATGTAGAGTCATCGGTGCAACTGATTCAG
GATACTCCTTTCAAGGCTGGGATGAAACGAATATCAGAAAAGCGAACAAT
ACCTGCACAATCGTTTTATGGGACCAAGAAGCACGCCAATGGCTCAAGAG
CAGGCACAATTGACGTTCCTGCACTAAAGCACGAAGTGAACGATAAGTTT
CACTCGCAAGAAATTATCCAATTGGAACTTTCAGACGACGAAGAGGATGA
CGTCATTGAATGTGAACCTATAACAAAGAATGGCAGTATCTTCACTCTTG
ATGACTACGAGATGCCCGGGTTCTTCGCCAAGGAGGAACCGTCTTTTGAA
ACCGATGTAAAACGTGCTCGAGATATTCGCTTTCGTCGTTTGGATCCAGA
AGAGCTCGTTATTTTGTCTTCTCTCACAGATCAAGTCCCAAAACAATTTG
TACTGTCAAGAATCGAAGAAGCTAACATTGGACTAAAAGGGGAGGACTTC
GCTCGTCTGAGAGGGTCACGATGGCTTAATGACGAGCTACTGAACTCTTT
TGTGGCACTTATCAACTCTCGCAATAGAAGAGATGTACTCCGTGAGTCCA
ATTTTGAGAATGAGGAAATCGAGTATAGCATCGATGTCGACGCTCCTCAG
GAAGGCCTATATAGTATTTTTTCCCGAAAACGGCCAAGGACTCATGTTTT
TAACACATTTTTCTTTCCCAGGCTTACTCAGAAAGGATATGACTACTCTG
GTGTGAAAAGATGGTTGAAACGTGCCGGGCTTTCTGTGAAAAGTCTCGAT
CTTATTCTTATTCCGATTAATCTGAACAACTTTCACTGGGTCCTAACCGC
GATAGATTTGCGCTCGAAGCATTTCCTGTACTTAGATTCTACTTTTGGTA
AGGATACGTCAGAAACTATTCCGATCCTGAAAAAATGGTTGTTTGATGAA
GTCAAGGATAAACACGGGATAGTAGCAGCTGAGAAGATGGGGATAAATCT
CTGGCCTGTACACATAAATCCGCCGTACTTGCCGCGGCAGCAGGACGGAG
GATCGTGTGGGATCTTTACGCTCTACATGGCCGACTACTTGGAAAGAGGA
CTGTGTCCGAACTTTACGCAAGACGATATTCGTACTCTTCGGAGGAGAAC
AGCTTTGTTCCTGAACGATGGCCGTCTACCAAACTAG

protein sequence of Gchil2052.t1

>Gchil2052.t1 ID=Gchil2052.t1|Name=Gchil2052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=729bp
MGNDSTHTNRQSNLFSPPLQQPQRCSPPPMLGRLQDAMYASKLKTSERLG
IIHLNAKKRLNAGHRSKMAADQSRQKRQKRQELEQIRERRNAELQQKWYI
ERARMARARIANRRHESDVIDLTQTREHDPDFDPKVEEDEDVTHITTKAR
RSKSRLREKIKVRPSDAVAYEKAHEVASACSTPPRSSPTEGMEDKEKENI
ISLLSSDDEKNKTSRLKLCRPKRQRPQKQRMKNQRQTVLFGLPVSDCAFD
PPSSDNAEEKPPPTPRINSTAERLKSPLHQIESDIEVELLRVEKSAKQKS
DTKIHGPAHDGNALELKISALPAFPEQISNTKLDSVVESSDVESSVQLIQ
DTPFKAGMKRISEKRTIPAQSFYGTKKHANGSRAGTIDVPALKHEVNDKF
HSQEIIQLELSDDEEDDVIECEPITKNGSIFTLDDYEMPGFFAKEEPSFE
TDVKRARDIRFRRLDPEELVILSSLTDQVPKQFVLSRIEEANIGLKGEDF
ARLRGSRWLNDELLNSFVALINSRNRRDVLRESNFENEEIEYSIDVDAPQ
EGLYSIFSRKRPRTHVFNTFFFPRLTQKGYDYSGVKRWLKRAGLSVKSLD
LILIPINLNNFHWVLTAIDLRSKHFLYLDSTFGKDTSETIPILKKWLFDE
VKDKHGIVAAEKMGINLWPVHINPPYLPRQQDGGSCGIFTLYMADYLERG
LCPNFTQDDIRTLRRRTALFLNDGRLPN*

mRNA from alignment at tig00000019_pilon:313053..315239+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2052.t1 ID=Gchil2052.t1|Name=Gchil2052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2187bp|location=Sequence derived from alignment at tig00000019_pilon:313053..315239+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTAACGATTCCACTCATACCAATCGCCAGAGTAACCTCTTTTCCCC
TCCACTTCAACAGCCCCAGCGCTGTTCGCCGCCCCCGATGCTTGGCCGCT
TGCAGGACGCTATGTACGCCTCAAAACTAAAGACCAGTGAGAGACTCGGA
ATCATTCACCTGAACGCAAAGAAGCGTCTTAACGCCGGCCATCGAAGCAA
AATGGCTGCAGACCAATCGCGCCAGAAGCGCCAGAAGCGACAGGAACTCG
AACAGATTCGAGAACGAAGAAACGCTGAACTGCAACAGAAGTGGTATATT
GAACGGGCGAGAATGGCACGCGCTAGAATAGCAAATCGTCGCCATGAGAG
CGACGTTATTGATCTCACCCAAACAAGGGAACACGATCCAGATTTTGACC
CAAAAGTTGAAGAGGATGAAGATGTAACGCATATAACAACGAAGGCGCGC
CGTTCGAAAAGCCGTTTAAGAGAGAAGATTAAAGTTCGGCCTTCTGACGC
TGTTGCATATGAAAAAGCGCACGAAGTCGCATCTGCATGTAGCACTCCCC
CACGCTCTTCACCAACTGAAGGAATGGAAGATAAAGAAAAGGAAAATATC
ATATCTCTGTTGTCATCTGATGATGAAAAGAATAAAACTTCGCGACTGAA
ACTGTGTCGACCGAAGAGACAGCGACCGCAGAAACAACGAATGAAGAATC
AGCGACAAACAGTTCTATTTGGTTTGCCTGTGTCTGACTGTGCGTTTGAT
CCGCCAAGCTCTGATAACGCAGAAGAGAAACCACCTCCCACGCCAAGAAT
CAATTCTACAGCGGAGCGGTTAAAAAGTCCACTCCATCAAATAGAAAGCG
ATATTGAGGTTGAACTCCTCAGAGTGGAAAAGTCAGCCAAACAAAAGAGC
GACACCAAAATACATGGTCCCGCTCATGACGGAAATGCTCTTGAGCTAAA
AATCAGTGCTCTACCAGCGTTTCCAGAGCAAATTAGCAACACGAAACTGG
ACAGTGTTGTCGAAAGCTCCGATGTAGAGTCATCGGTGCAACTGATTCAG
GATACTCCTTTCAAGGCTGGGATGAAACGAATATCAGAAAAGCGAACAAT
ACCTGCACAATCGTTTTATGGGACCAAGAAGCACGCCAATGGCTCAAGAG
CAGGCACAATTGACGTTCCTGCACTAAAGCACGAAGTGAACGATAAGTTT
CACTCGCAAGAAATTATCCAATTGGAACTTTCAGACGACGAAGAGGATGA
CGTCATTGAATGTGAACCTATAACAAAGAATGGCAGTATCTTCACTCTTG
ATGACTACGAGATGCCCGGGTTCTTCGCCAAGGAGGAACCGTCTTTTGAA
ACCGATGTAAAACGTGCTCGAGATATTCGCTTTCGTCGTTTGGATCCAGA
AGAGCTCGTTATTTTGTCTTCTCTCACAGATCAAGTCCCAAAACAATTTG
TACTGTCAAGAATCGAAGAAGCTAACATTGGACTAAAAGGGGAGGACTTC
GCTCGTCTGAGAGGGTCACGATGGCTTAATGACGAGCTACTGAACTCTTT
TGTGGCACTTATCAACTCTCGCAATAGAAGAGATGTACTCCGTGAGTCCA
ATTTTGAGAATGAGGAAATCGAGTATAGCATCGATGTCGACGCTCCTCAG
GAAGGCCTATATAGTATTTTTTCCCGAAAACGGCCAAGGACTCATGTTTT
TAACACATTTTTCTTTCCCAGGCTTACTCAGAAAGGATATGACTACTCTG
GTGTGAAAAGATGGTTGAAACGTGCCGGGCTTTCTGTGAAAAGTCTCGAT
CTTATTCTTATTCCGATTAATCTGAACAACTTTCACTGGGTCCTAACCGC
GATAGATTTGCGCTCGAAGCATTTCCTGTACTTAGATTCTACTTTTGGTA
AGGATACGTCAGAAACTATTCCGATCCTGAAAAAATGGTTGTTTGATGAA
GTCAAGGATAAACACGGGATAGTAGCAGCTGAGAAGATGGGGATAAATCT
CTGGCCTGTACACATAAATCCGCCGTACTTGCCGCGGCAGCAGGACGGAG
GATCGTGTGGGATCTTTACGCTCTACATGGCCGACTACTTGGAAAGAGGA
CTGTGTCCGAACTTTACGCAAGACGATATTCGTACTCTTCGGAGGAGAAC
AGCTTTGTTCCTGAACGATGGCCGTCTACCAAACTAG

Coding sequence (CDS) from alignment at tig00000019_pilon:313053..315239+

>Gchil2052.t1 ID=Gchil2052.t1|Name=Gchil2052.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2187bp|location=Sequence derived from alignment at tig00000019_pilon:313053..315239+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTAACGATTCCACTCATACCAATCGCCAGAGTAACCTCTTTTCCCC
TCCACTTCAACAGCCCCAGCGCTGTTCGCCGCCCCCGATGCTTGGCCGCT
TGCAGGACGCTATGTACGCCTCAAAACTAAAGACCAGTGAGAGACTCGGA
ATCATTCACCTGAACGCAAAGAAGCGTCTTAACGCCGGCCATCGAAGCAA
AATGGCTGCAGACCAATCGCGCCAGAAGCGCCAGAAGCGACAGGAACTCG
AACAGATTCGAGAACGAAGAAACGCTGAACTGCAACAGAAGTGGTATATT
GAACGGGCGAGAATGGCACGCGCTAGAATAGCAAATCGTCGCCATGAGAG
CGACGTTATTGATCTCACCCAAACAAGGGAACACGATCCAGATTTTGACC
CAAAAGTTGAAGAGGATGAAGATGTAACGCATATAACAACGAAGGCGCGC
CGTTCGAAAAGCCGTTTAAGAGAGAAGATTAAAGTTCGGCCTTCTGACGC
TGTTGCATATGAAAAAGCGCACGAAGTCGCATCTGCATGTAGCACTCCCC
CACGCTCTTCACCAACTGAAGGAATGGAAGATAAAGAAAAGGAAAATATC
ATATCTCTGTTGTCATCTGATGATGAAAAGAATAAAACTTCGCGACTGAA
ACTGTGTCGACCGAAGAGACAGCGACCGCAGAAACAACGAATGAAGAATC
AGCGACAAACAGTTCTATTTGGTTTGCCTGTGTCTGACTGTGCGTTTGAT
CCGCCAAGCTCTGATAACGCAGAAGAGAAACCACCTCCCACGCCAAGAAT
CAATTCTACAGCGGAGCGGTTAAAAAGTCCACTCCATCAAATAGAAAGCG
ATATTGAGGTTGAACTCCTCAGAGTGGAAAAGTCAGCCAAACAAAAGAGC
GACACCAAAATACATGGTCCCGCTCATGACGGAAATGCTCTTGAGCTAAA
AATCAGTGCTCTACCAGCGTTTCCAGAGCAAATTAGCAACACGAAACTGG
ACAGTGTTGTCGAAAGCTCCGATGTAGAGTCATCGGTGCAACTGATTCAG
GATACTCCTTTCAAGGCTGGGATGAAACGAATATCAGAAAAGCGAACAAT
ACCTGCACAATCGTTTTATGGGACCAAGAAGCACGCCAATGGCTCAAGAG
CAGGCACAATTGACGTTCCTGCACTAAAGCACGAAGTGAACGATAAGTTT
CACTCGCAAGAAATTATCCAATTGGAACTTTCAGACGACGAAGAGGATGA
CGTCATTGAATGTGAACCTATAACAAAGAATGGCAGTATCTTCACTCTTG
ATGACTACGAGATGCCCGGGTTCTTCGCCAAGGAGGAACCGTCTTTTGAA
ACCGATGTAAAACGTGCTCGAGATATTCGCTTTCGTCGTTTGGATCCAGA
AGAGCTCGTTATTTTGTCTTCTCTCACAGATCAAGTCCCAAAACAATTTG
TACTGTCAAGAATCGAAGAAGCTAACATTGGACTAAAAGGGGAGGACTTC
GCTCGTCTGAGAGGGTCACGATGGCTTAATGACGAGCTACTGAACTCTTT
TGTGGCACTTATCAACTCTCGCAATAGAAGAGATGTACTCCGTGAGTCCA
ATTTTGAGAATGAGGAAATCGAGTATAGCATCGATGTCGACGCTCCTCAG
GAAGGCCTATATAGTATTTTTTCCCGAAAACGGCCAAGGACTCATGTTTT
TAACACATTTTTCTTTCCCAGGCTTACTCAGAAAGGATATGACTACTCTG
GTGTGAAAAGATGGTTGAAACGTGCCGGGCTTTCTGTGAAAAGTCTCGAT
CTTATTCTTATTCCGATTAATCTGAACAACTTTCACTGGGTCCTAACCGC
GATAGATTTGCGCTCGAAGCATTTCCTGTACTTAGATTCTACTTTTGGTA
AGGATACGTCAGAAACTATTCCGATCCTGAAAAAATGGTTGTTTGATGAA
GTCAAGGATAAACACGGGATAGTAGCAGCTGAGAAGATGGGGATAAATCT
CTGGCCTGTACACATAAATCCGCCGTACTTGCCGCGGCAGCAGGACGGAG
GATCGTGTGGGATCTTTACGCTCTACATGGCCGACTACTTGGAAAGAGGA
CTGTGTCCGAACTTTACGCAAGACGATATTCGTACTCTTCGGAGGAGAAC
AGCTTTGTTCCTGAACGATGGCCGTCTACCAAACTAG