Gchil2049.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2049.t1
Unique NameGchil2049.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:304171..305465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS007CT
PFAMsDJ-1_PfpI
Max annot lvl2759|Eukaryota
KEGG koko:K03152
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006081,GO:0006082,GO:0006089,GO:0006457,GO:0006464,GO:0006517,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009100,GO:0009266,GO:0009408,GO:0009438,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009658,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016043,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019172,GO:0019249,GO:0019538,GO:0019752,GO:0022613,GO:0030054,GO:0030091,GO:0031090,GO:0032787,GO:0033554,GO:0034599,GO:0036211,GO:0036524,GO:0036525,GO:0042026,GO:0042180,GO:0042182,GO:0042221,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046185,GO:0046394,GO:0046686,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051596,GO:0051716,GO:0055044,GO:0061727,GO:0065007,GO:0070887,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0080134,GO:0080135,GO:0098588,GO:0098805,GO:0140096,GO:1900407,GO:1900409,GO:1901135,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1902882,GO:1902884
Evalue2.37e-48
EggNOG OGsCOG0693@1|root,KOG2764@2759|Eukaryota
EC3.5.1.124
Descriptionguanine deglycation, methylglyoxal removal
COG categoryJ
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2049Gchil2049Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 304171..305465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2049.t1Gchil2049.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 304171..305465 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2049.t1.start1Gchil2049.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 304171..304173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2049.t1.CDS1Gchil2049.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 304171..304817 +
Gchil2049.t1.CDS2Gchil2049.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 305218..305254 +
Gchil2049.t1.CDS3Gchil2049.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 305460..305465 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2049.t1.exon1Gchil2049.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 304171..304817 +
Gchil2049.t1.exon2Gchil2049.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 305218..305254 +
Gchil2049.t1.exon3Gchil2049.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 305460..305465 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2049.t1.intron1Gchil2049.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000019_pilon 304818..305217 +
Gchil2049.t1.intron2Gchil2049.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000019_pilon 305255..305459 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2049.t1.stop1Gchil2049.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 305463..305465 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2049.t1 ID=Gchil2049.t1|Name=Gchil2049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=230bp
MTGDEPAFLIPSPLKIHHPRLPRTNNRRPEMATTPARRVLVTIGTGSEEI
ETAAAVDTLRRAGADVALASVESSLTVQMSRGMKYEADILIENASPPYDC
IALPGGMPGAERLRDCEKLTSLLKEAAASGGRIAAVCASPAVVLGSHGLL
EGVEATCYPAAGFREMVKKVDNGDVVIGKNGQYITATGPGTSIKWALMIV
EALYDKEKADKIASSISSDAARYYLLLTN*
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spliced messenger RNA

>Gchil2049.t1 ID=Gchil2049.t1|Name=Gchil2049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000019_pilon:304171..305465+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGGCGACGAGCCAGCGTTTCTCATTCCGAGTCCCTTAAAGATCCA
CCATCCTCGTCTTCCCCGAACCAACAACCGTCGTCCAGAAATGGCTACCA
CTCCCGCTCGTCGCGTGCTCGTCACGATTGGTACGGGCTCGGAGGAGATC
GAGACGGCCGCCGCAGTCGATACTCTTCGGCGAGCGGGCGCCGATGTGGC
CCTCGCGTCTGTCGAATCGTCGCTCACTGTTCAAATGTCTCGTGGCATGA
AATATGAAGCGGATATTCTTATTGAAAATGCATCCCCGCCTTATGATTGC
ATTGCTTTGCCGGGTGGTATGCCTGGGGCTGAGCGACTGCGCGATTGTGA
GAAACTAACCTCACTGCTTAAAGAAGCTGCCGCTAGTGGAGGCAGGATTG
CTGCCGTCTGTGCGTCTCCAGCGGTTGTGCTGGGGTCTCATGGATTACTT
GAGGGGGTTGAAGCTACTTGCTATCCGGCTGCTGGGTTTAGAGAAATGGT
AAAAAAGGTTGACAACGGTGATGTCGTCATTGGGAAGAATGGTCAGTACA
TTACCGCCACTGGACCTGGAACTTCTATCAAATGGGCGCTCATGATAGTC
GAGGCGTTGTATGACAAGGAGAAAGCAGACAAGATTGCCAGCTCTATTAG
TTCCGATGCTGCACGCTATTACCTTTTGTTGACGAATTGA
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protein sequence of Gchil2049.t1

>Gchil2049.t1 ID=Gchil2049.t1|Name=Gchil2049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=230bp
MTGDEPAFLIPSPLKIHHPRLPRTNNRRPEMATTPARRVLVTIGTGSEEI
ETAAAVDTLRRAGADVALASVESSLTVQMSRGMKYEADILIENASPPYDC
IALPGGMPGAERLRDCEKLTSLLKEAAASGGRIAAVCASPAVVLGSHGLL
EGVEATCYPAAGFREMVKKVDNGDVVIGKNGQYITATGPGTSIKWALMIV
EALYDKEKADKIASSISSDAARYYLLLTN*
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mRNA from alignment at tig00000019_pilon:304171..305465+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2049.t1 ID=Gchil2049.t1|Name=Gchil2049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1295bp|location=Sequence derived from alignment at tig00000019_pilon:304171..305465+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGGCGACGAGCCAGCGTTTCTCATTCCGAGTCCCTTAAAGATCCA
CCATCCTCGTCTTCCCCGAACCAACAACCGTCGTCCAGAAATGGCTACCA
CTCCCGCTCGTCGCGTGCTCGTCACGATTGGTACGGGCTCGGAGGAGATC
GAGACGGCCGCCGCAGTCGATACTCTTCGGCGAGCGGGCGCCGATGTGGC
CCTCGCGTCTGTCGAATCGTCGCTCACTGTTCAAATGTCTCGTGGCATGA
AATATGAAGCGGATATTCTTATTGAAAATGCATCCCCGCCTTATGATTGC
ATTGCTTTGCCGGGTGGTATGCCTGGGGCTGAGCGACTGCGCGATTGTGA
GAAACTAACCTCACTGCTTAAAGAAGCTGCCGCTAGTGGAGGCAGGATTG
CTGCCGTCTGTGCGTCTCCAGCGGTTGTGCTGGGGTCTCATGGATTACTT
GAGGGGGTTGAAGCTACTTGCTATCCGGCTGCTGGGTTTAGAGAAATGGT
AAAAAAGGTTGACAACGGTGATGTCGTCATTGGGAAGAATGGTCAGTACA
TTACCGCCACTGGACCTGGAACTTCTATCAAATGGGCGCTCATGATAGTC
GAGGCGTTGTATGACAAGGAGAAAGCAGACAAGATTGCCAGCTCTATGTT
GGTTACTCGCGATTAACATGCCTTGCTCTCGCGCTCTTAGATCTACAGAG
TTCAAAATTTGGTGAGGGCAGTAGGCGATTGCTGGATTCTGCAAGAACCA
TATTGTTAAGGGTTACCGACGAAGGTAGATTGCTACCATTGGGTGAAAAC
TTTTGTGCAACAAAGAAAACTTTGCAAAAGTTCGCCCATATCAGGCGTGC
CCGATATCGTATCTGTGATTTTCGTTTCATGTCTTGGGTAGTGGACGAAT
CGCTGGTTAACAAGGAACAGCGTCGAACACGTGGGCAACGACCAGCCGTG
TCTCCGATGTGATCAGGTTGGCAATGTTCGACGGCGTCCTTAGCGCTTGT
ATCCCATCCCAGCGTTGACCCGCTTCCTCGCGCGATCGGGGTCTCAGTAG
TTCCGATGCTGCACGCTATTACCTTTTGTTGACGGTAAGTACAAAAGCTC
GCCTCTGATTTCCCAGTTTCCAGAAGTGCCGCAATGATGAAACCTCAACC
GCTACATGTAGGAATCTCTCGGATCTAATCGTGACGAGAAAAGCTTTTTT
TTATCTTCTTTCCCCTGAGCGTTGCACGGATCTCCACGCTGCTTTTCGGT
TGGATCAACTAACAAACATGAGTGTGTTCTTTTTCCAAGAATTGA
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Coding sequence (CDS) from alignment at tig00000019_pilon:304171..305465+

>Gchil2049.t1 ID=Gchil2049.t1|Name=Gchil2049.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000019_pilon:304171..305465+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGGCGACGAGCCAGCGTTTCTCATTCCGAGTCCCTTAAAGATCCA
CCATCCTCGTCTTCCCCGAACCAACAACCGTCGTCCAGAAATGGCTACCA
CTCCCGCTCGTCGCGTGCTCGTCACGATTGGTACGGGCTCGGAGGAGATC
GAGACGGCCGCCGCAGTCGATACTCTTCGGCGAGCGGGCGCCGATGTGGC
CCTCGCGTCTGTCGAATCGTCGCTCACTGTTCAAATGTCTCGTGGCATGA
AATATGAAGCGGATATTCTTATTGAAAATGCATCCCCGCCTTATGATTGC
ATTGCTTTGCCGGGTGGTATGCCTGGGGCTGAGCGACTGCGCGATTGTGA
GAAACTAACCTCACTGCTTAAAGAAGCTGCCGCTAGTGGAGGCAGGATTG
CTGCCGTCTGTGCGTCTCCAGCGGTTGTGCTGGGGTCTCATGGATTACTT
GAGGGGGTTGAAGCTACTTGCTATCCGGCTGCTGGGTTTAGAGAAATGGT
AAAAAAGGTTGACAACGGTGATGTCGTCATTGGGAAGAATGGTCAGTACA
TTACCGCCACTGGACCTGGAACTTCTATCAAATGGGCGCTCATGATAGTC
GAGGCGTTGTATGACAAGGAGAAAGCAGACAAGATTGCCAGCTCTATTAG
TTCCGATGCTGCACGCTATTACCTTTTGTTGACGAATTGA
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