Gchil2047.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2047.t1
Unique NameGchil2047.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:257451..258527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703924.1
PFAMsRINT1_TIP1
Max annot lvl2759|Eukaryota
KEGG koko:K20474
Evalue6.03e-08
EggNOG OGsKOG2218@1|root,KOG2218@2759|Eukaryota
Descriptionregulation of signal transduction involved in mitotic G2 DNA damage checkpoint
COG categoryKLT
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2047Gchil2047Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 257451..258527 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2047.t1.stop1Gchil2047.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 257451..257453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2047.t1.CDS1Gchil2047.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 257451..258527 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2047.t1.exon1Gchil2047.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 257451..258527 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2047.t1.start1Gchil2047.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 258525..258527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2047.t1Gchil2047.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 257451..258527 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2047.t1 ID=Gchil2047.t1|Name=Gchil2047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=359bp
MSQESAVVTREHLEYFCQEIVNHVGSASQKARALDSEERIATFLKLTELP
LLQAIRSRVKERVEETDYEDLSVEQIQRSTRASFLAHLIADGLEDRSLDP
FYMAQEHRSGKGFYEDEISRLRALHSSNSTITTDAIASTFIEAVRADYAD
RTRFGEIQAPDAAIVLTHDLSESLVNPFISLESMLGGVKTGIPCRKSASA
IWRAVASKLDAFFFYDIVLQCFAGGSRNAMAVAAEINGFLSPTHMARMAR
KVAHDTSMFVSTFTAVSRNPPKFLPSCAECGVVLQMAASKVLRPNAPLKE
EHQEALDALECVATSDEDEVVQAAKRALENAINVVHITPREALELCAIAG
LRFAIRLM*
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spliced messenger RNA

>Gchil2047.t1 ID=Gchil2047.t1|Name=Gchil2047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000019_pilon:257451..258527- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACAGGAAAGTGCGGTCGTCACGCGTGAGCATCTTGAATACTTTTG
TCAGGAAATTGTTAATCATGTCGGAAGTGCGAGTCAGAAAGCGAGGGCGC
TGGACAGTGAAGAGCGCATTGCCACATTCCTCAAACTCACGGAGCTTCCT
TTGCTGCAGGCCATTCGATCGCGAGTAAAAGAGCGAGTTGAGGAAACCGA
CTATGAGGACCTTTCTGTTGAGCAAATTCAACGAAGCACGCGCGCCTCTT
TTTTGGCGCATCTTATTGCTGATGGTCTGGAAGATCGGAGCCTTGACCCC
TTTTACATGGCGCAGGAGCATCGATCGGGCAAAGGCTTTTATGAAGACGA
AATATCACGGCTACGAGCGCTTCACTCATCTAACAGTACAATAACTACAG
ACGCGATTGCGAGCACCTTCATTGAAGCTGTTCGCGCTGACTATGCCGAC
CGAACTCGCTTTGGAGAAATTCAGGCACCCGATGCGGCCATTGTGCTAAC
TCATGATTTATCAGAGTCTCTTGTTAACCCGTTTATTTCGTTGGAGAGCA
TGCTGGGTGGGGTGAAGACGGGTATTCCTTGTCGAAAGTCCGCATCTGCT
ATCTGGCGTGCTGTAGCTTCAAAGCTGGATGCATTCTTCTTTTATGATAT
TGTGCTGCAATGTTTCGCGGGTGGCAGCCGGAATGCAATGGCTGTTGCCG
CTGAGATCAATGGGTTTCTAAGCCCGACACACATGGCGCGCATGGCGAGA
AAAGTCGCACACGATACATCTATGTTCGTATCTACTTTCACCGCCGTGTC
GCGAAACCCCCCTAAATTCCTGCCATCGTGTGCGGAATGTGGCGTCGTGC
TGCAGATGGCTGCCAGCAAGGTTCTTCGACCTAATGCCCCGCTGAAGGAG
GAGCATCAAGAAGCACTCGATGCGCTTGAGTGCGTCGCTACCTCAGATGA
GGATGAAGTGGTGCAGGCTGCGAAACGAGCTTTGGAAAATGCAATCAACG
TTGTTCACATCACTCCACGTGAGGCATTGGAATTGTGTGCAATAGCTGGG
CTCAGATTCGCCATAAGGCTAATGTAA
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protein sequence of Gchil2047.t1

>Gchil2047.t1 ID=Gchil2047.t1|Name=Gchil2047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=359bp
MSQESAVVTREHLEYFCQEIVNHVGSASQKARALDSEERIATFLKLTELP
LLQAIRSRVKERVEETDYEDLSVEQIQRSTRASFLAHLIADGLEDRSLDP
FYMAQEHRSGKGFYEDEISRLRALHSSNSTITTDAIASTFIEAVRADYAD
RTRFGEIQAPDAAIVLTHDLSESLVNPFISLESMLGGVKTGIPCRKSASA
IWRAVASKLDAFFFYDIVLQCFAGGSRNAMAVAAEINGFLSPTHMARMAR
KVAHDTSMFVSTFTAVSRNPPKFLPSCAECGVVLQMAASKVLRPNAPLKE
EHQEALDALECVATSDEDEVVQAAKRALENAINVVHITPREALELCAIAG
LRFAIRLM*
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mRNA from alignment at tig00000019_pilon:257451..258527-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2047.t1 ID=Gchil2047.t1|Name=Gchil2047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000019_pilon:257451..258527- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACAGGAAAGTGCGGTCGTCACGCGTGAGCATCTTGAATACTTTTG
TCAGGAAATTGTTAATCATGTCGGAAGTGCGAGTCAGAAAGCGAGGGCGC
TGGACAGTGAAGAGCGCATTGCCACATTCCTCAAACTCACGGAGCTTCCT
TTGCTGCAGGCCATTCGATCGCGAGTAAAAGAGCGAGTTGAGGAAACCGA
CTATGAGGACCTTTCTGTTGAGCAAATTCAACGAAGCACGCGCGCCTCTT
TTTTGGCGCATCTTATTGCTGATGGTCTGGAAGATCGGAGCCTTGACCCC
TTTTACATGGCGCAGGAGCATCGATCGGGCAAAGGCTTTTATGAAGACGA
AATATCACGGCTACGAGCGCTTCACTCATCTAACAGTACAATAACTACAG
ACGCGATTGCGAGCACCTTCATTGAAGCTGTTCGCGCTGACTATGCCGAC
CGAACTCGCTTTGGAGAAATTCAGGCACCCGATGCGGCCATTGTGCTAAC
TCATGATTTATCAGAGTCTCTTGTTAACCCGTTTATTTCGTTGGAGAGCA
TGCTGGGTGGGGTGAAGACGGGTATTCCTTGTCGAAAGTCCGCATCTGCT
ATCTGGCGTGCTGTAGCTTCAAAGCTGGATGCATTCTTCTTTTATGATAT
TGTGCTGCAATGTTTCGCGGGTGGCAGCCGGAATGCAATGGCTGTTGCCG
CTGAGATCAATGGGTTTCTAAGCCCGACACACATGGCGCGCATGGCGAGA
AAAGTCGCACACGATACATCTATGTTCGTATCTACTTTCACCGCCGTGTC
GCGAAACCCCCCTAAATTCCTGCCATCGTGTGCGGAATGTGGCGTCGTGC
TGCAGATGGCTGCCAGCAAGGTTCTTCGACCTAATGCCCCGCTGAAGGAG
GAGCATCAAGAAGCACTCGATGCGCTTGAGTGCGTCGCTACCTCAGATGA
GGATGAAGTGGTGCAGGCTGCGAAACGAGCTTTGGAAAATGCAATCAACG
TTGTTCACATCACTCCACGTGAGGCATTGGAATTGTGTGCAATAGCTGGG
CTCAGATTCGCCATAAGGCTAATGTAA
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Coding sequence (CDS) from alignment at tig00000019_pilon:257451..258527-

>Gchil2047.t1 ID=Gchil2047.t1|Name=Gchil2047.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00000019_pilon:257451..258527- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACAGGAAAGTGCGGTCGTCACGCGTGAGCATCTTGAATACTTTTG
TCAGGAAATTGTTAATCATGTCGGAAGTGCGAGTCAGAAAGCGAGGGCGC
TGGACAGTGAAGAGCGCATTGCCACATTCCTCAAACTCACGGAGCTTCCT
TTGCTGCAGGCCATTCGATCGCGAGTAAAAGAGCGAGTTGAGGAAACCGA
CTATGAGGACCTTTCTGTTGAGCAAATTCAACGAAGCACGCGCGCCTCTT
TTTTGGCGCATCTTATTGCTGATGGTCTGGAAGATCGGAGCCTTGACCCC
TTTTACATGGCGCAGGAGCATCGATCGGGCAAAGGCTTTTATGAAGACGA
AATATCACGGCTACGAGCGCTTCACTCATCTAACAGTACAATAACTACAG
ACGCGATTGCGAGCACCTTCATTGAAGCTGTTCGCGCTGACTATGCCGAC
CGAACTCGCTTTGGAGAAATTCAGGCACCCGATGCGGCCATTGTGCTAAC
TCATGATTTATCAGAGTCTCTTGTTAACCCGTTTATTTCGTTGGAGAGCA
TGCTGGGTGGGGTGAAGACGGGTATTCCTTGTCGAAAGTCCGCATCTGCT
ATCTGGCGTGCTGTAGCTTCAAAGCTGGATGCATTCTTCTTTTATGATAT
TGTGCTGCAATGTTTCGCGGGTGGCAGCCGGAATGCAATGGCTGTTGCCG
CTGAGATCAATGGGTTTCTAAGCCCGACACACATGGCGCGCATGGCGAGA
AAAGTCGCACACGATACATCTATGTTCGTATCTACTTTCACCGCCGTGTC
GCGAAACCCCCCTAAATTCCTGCCATCGTGTGCGGAATGTGGCGTCGTGC
TGCAGATGGCTGCCAGCAAGGTTCTTCGACCTAATGCCCCGCTGAAGGAG
GAGCATCAAGAAGCACTCGATGCGCTTGAGTGCGTCGCTACCTCAGATGA
GGATGAAGTGGTGCAGGCTGCGAAACGAGCTTTGGAAAATGCAATCAACG
TTGTTCACATCACTCCACGTGAGGCATTGGAATTGTGTGCAATAGCTGGG
CTCAGATTCGCCATAAGGCTAATGTAA
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