Gchil2046.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2046.t1
Unique Name	Gchil2046.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	535

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000019_pilon	contig	tig00000019_pilon:255792..257396 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2046	Gchil2046	Gracilaria chilensis NLEC103_M9 male	gene	tig00000019_pilon 255792..257396 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2046.t1.start1	Gchil2046.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000019_pilon 255792..255794 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2046.t1.CDS1	Gchil2046.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000019_pilon 255792..257396 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2046.t1.exon1	Gchil2046.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000019_pilon 255792..257396 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2046.t1.stop1	Gchil2046.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000019_pilon 257394..257396 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2046.t1	Gchil2046.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000019_pilon 255792..257396 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000019_pilon:255792..257396+
coding sequence from alignment at tig00000019_pilon:255792..257396+

mRNA sequence

>Gchil2046.t1 ID=Gchil2046.t1|Name=Gchil2046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=535bp
MAQRVKDLIKRSGSRITASQGSVKHIGTTPYRFRIDIFVSVVERVLNAAQ
ICVTCERRGNRHGTQPAQVVNGKAEIGETISLECTLFRKIPKTGKGAAAS
APPSPSTDTSELLFDEKLAKVVLRKGAVDGKALGKIAVDFSKYIKGTTST
VFADLTLSNGSTVITKIEATMLHIGKKSKTGSHAGSDTLSEITDVYRDDD
SIFGDHVSEDLGDLEQVTRSSNPLARTFCSSPAMSPSSTLTSADSPQRLP
SAKSKANTFVGTIPNRQKSLATDSVNSQESSHELSPLEHSKREKGPDGMR
ESPSLRDKLKTKLKERKGTKRIKEHKTDEAETRSTPPVKNATTTPSKREK
EKHAIPPELLSELNELKAQTKALKKENSKLKNSNRNAHEEINALKADLEA
QELDLEDEKSKSVREKKTVVTKAEPELSNTIKEKDRRIAELEAQNESLLE
ELEEHHEENVESTKLHETSNNKIKALKKKIEELEIALKREPRFLDVVNEL
KVTKVSLALANMEKEQALFRMQAMQHKLGFITEK*

spliced messenger RNA

>Gchil2046.t1 ID=Gchil2046.t1|Name=Gchil2046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at tig00000019_pilon:255792..257396+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAGAGAGTAAAGGATTTGATAAAACGATCAGGTTCAAGGATTAC
AGCTTCACAAGGTTCTGTCAAACATATAGGAACGACGCCATATCGCTTTC
GAATCGATATATTTGTATCAGTCGTTGAAAGAGTTCTGAACGCTGCGCAA
ATATGTGTCACGTGCGAACGAAGAGGAAACCGTCATGGCACGCAACCAGC
ACAAGTAGTAAACGGAAAGGCTGAGATTGGAGAAACAATAAGCTTGGAGT
GCACCTTATTTCGAAAGATACCAAAAACTGGAAAAGGAGCTGCTGCTTCT
GCGCCTCCTTCACCGTCAACTGATACTTCCGAGCTGCTATTTGATGAGAA
ATTGGCAAAGGTTGTGTTGAGGAAGGGAGCGGTTGACGGGAAGGCATTAG
GAAAGATAGCTGTCGACTTTTCAAAGTATATTAAGGGAACTACCAGCACT
GTATTTGCAGACCTTACCCTTTCAAATGGTTCAACAGTCATCACCAAGAT
TGAAGCCACGATGCTCCACATCGGCAAGAAATCGAAGACTGGTTCTCATG
CCGGCTCCGATACTTTGTCTGAGATCACAGACGTTTACCGGGATGACGAT
TCCATTTTCGGAGACCACGTTAGCGAAGACCTTGGTGATCTCGAGCAAGT
CACAAGGTCGTCGAACCCTTTAGCTAGGACTTTTTGCTCGAGCCCAGCTA
TGAGTCCTTCCTCCACTCTTACTTCCGCAGACTCACCACAGCGACTGCCT
TCTGCTAAGAGCAAGGCTAATACTTTTGTTGGTACCATTCCAAACCGGCA
GAAATCGCTTGCCACCGATTCGGTGAACAGCCAAGAGTCGTCGCATGAGC
TATCACCACTTGAACACTCAAAGCGTGAAAAAGGACCGGATGGAATGAGG
GAGAGTCCTTCCCTAAGAGACAAGTTGAAGACCAAGCTAAAGGAACGAAA
AGGAACTAAGCGAATCAAAGAACACAAGACTGACGAAGCAGAAACAAGAT
CCACTCCCCCTGTCAAGAACGCTACCACAACCCCGTCGAAACGAGAGAAA
GAAAAACATGCCATTCCACCGGAATTACTCTCTGAACTGAATGAACTCAA
AGCTCAAACAAAGGCGTTAAAGAAGGAGAACAGCAAGTTGAAAAATTCCA
ACCGAAACGCTCACGAGGAGATTAACGCGCTCAAGGCTGACTTGGAGGCC
CAGGAACTAGACCTGGAGGATGAAAAGAGTAAATCGGTGAGAGAAAAAAA
GACCGTTGTCACCAAAGCCGAACCAGAGCTTTCCAACACAATCAAAGAAA
AAGACAGAAGAATTGCAGAGCTCGAAGCCCAAAACGAAAGCCTTCTGGAG
GAGCTAGAAGAGCATCACGAGGAAAATGTTGAGTCCACCAAGCTGCATGA
AACAAGCAACAACAAGATCAAGGCGCTTAAGAAAAAGATCGAAGAGCTCG
AGATTGCACTTAAGAGAGAACCACGCTTCCTGGATGTCGTGAACGAATTG
AAGGTGACAAAAGTATCTCTAGCGTTGGCGAATATGGAAAAGGAACAAGC
CTTATTTCGAATGCAAGCTATGCAGCATAAGCTTGGGTTCATCACTGAAA
AATAG

protein sequence of Gchil2046.t1

>Gchil2046.t1 ID=Gchil2046.t1|Name=Gchil2046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=535bp
MAQRVKDLIKRSGSRITASQGSVKHIGTTPYRFRIDIFVSVVERVLNAAQ
ICVTCERRGNRHGTQPAQVVNGKAEIGETISLECTLFRKIPKTGKGAAAS
APPSPSTDTSELLFDEKLAKVVLRKGAVDGKALGKIAVDFSKYIKGTTST
VFADLTLSNGSTVITKIEATMLHIGKKSKTGSHAGSDTLSEITDVYRDDD
SIFGDHVSEDLGDLEQVTRSSNPLARTFCSSPAMSPSSTLTSADSPQRLP
SAKSKANTFVGTIPNRQKSLATDSVNSQESSHELSPLEHSKREKGPDGMR
ESPSLRDKLKTKLKERKGTKRIKEHKTDEAETRSTPPVKNATTTPSKREK
EKHAIPPELLSELNELKAQTKALKKENSKLKNSNRNAHEEINALKADLEA
QELDLEDEKSKSVREKKTVVTKAEPELSNTIKEKDRRIAELEAQNESLLE
ELEEHHEENVESTKLHETSNNKIKALKKKIEELEIALKREPRFLDVVNEL
KVTKVSLALANMEKEQALFRMQAMQHKLGFITEK*

mRNA from alignment at tig00000019_pilon:255792..257396+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2046.t1 ID=Gchil2046.t1|Name=Gchil2046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at tig00000019_pilon:255792..257396+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCAGAGAGTAAAGGATTTGATAAAACGATCAGGTTCAAGGATTAC
AGCTTCACAAGGTTCTGTCAAACATATAGGAACGACGCCATATCGCTTTC
GAATCGATATATTTGTATCAGTCGTTGAAAGAGTTCTGAACGCTGCGCAA
ATATGTGTCACGTGCGAACGAAGAGGAAACCGTCATGGCACGCAACCAGC
ACAAGTAGTAAACGGAAAGGCTGAGATTGGAGAAACAATAAGCTTGGAGT
GCACCTTATTTCGAAAGATACCAAAAACTGGAAAAGGAGCTGCTGCTTCT
GCGCCTCCTTCACCGTCAACTGATACTTCCGAGCTGCTATTTGATGAGAA
ATTGGCAAAGGTTGTGTTGAGGAAGGGAGCGGTTGACGGGAAGGCATTAG
GAAAGATAGCTGTCGACTTTTCAAAGTATATTAAGGGAACTACCAGCACT
GTATTTGCAGACCTTACCCTTTCAAATGGTTCAACAGTCATCACCAAGAT
TGAAGCCACGATGCTCCACATCGGCAAGAAATCGAAGACTGGTTCTCATG
CCGGCTCCGATACTTTGTCTGAGATCACAGACGTTTACCGGGATGACGAT
TCCATTTTCGGAGACCACGTTAGCGAAGACCTTGGTGATCTCGAGCAAGT
CACAAGGTCGTCGAACCCTTTAGCTAGGACTTTTTGCTCGAGCCCAGCTA
TGAGTCCTTCCTCCACTCTTACTTCCGCAGACTCACCACAGCGACTGCCT
TCTGCTAAGAGCAAGGCTAATACTTTTGTTGGTACCATTCCAAACCGGCA
GAAATCGCTTGCCACCGATTCGGTGAACAGCCAAGAGTCGTCGCATGAGC
TATCACCACTTGAACACTCAAAGCGTGAAAAAGGACCGGATGGAATGAGG
GAGAGTCCTTCCCTAAGAGACAAGTTGAAGACCAAGCTAAAGGAACGAAA
AGGAACTAAGCGAATCAAAGAACACAAGACTGACGAAGCAGAAACAAGAT
CCACTCCCCCTGTCAAGAACGCTACCACAACCCCGTCGAAACGAGAGAAA
GAAAAACATGCCATTCCACCGGAATTACTCTCTGAACTGAATGAACTCAA
AGCTCAAACAAAGGCGTTAAAGAAGGAGAACAGCAAGTTGAAAAATTCCA
ACCGAAACGCTCACGAGGAGATTAACGCGCTCAAGGCTGACTTGGAGGCC
CAGGAACTAGACCTGGAGGATGAAAAGAGTAAATCGGTGAGAGAAAAAAA
GACCGTTGTCACCAAAGCCGAACCAGAGCTTTCCAACACAATCAAAGAAA
AAGACAGAAGAATTGCAGAGCTCGAAGCCCAAAACGAAAGCCTTCTGGAG
GAGCTAGAAGAGCATCACGAGGAAAATGTTGAGTCCACCAAGCTGCATGA
AACAAGCAACAACAAGATCAAGGCGCTTAAGAAAAAGATCGAAGAGCTCG
AGATTGCACTTAAGAGAGAACCACGCTTCCTGGATGTCGTGAACGAATTG
AAGGTGACAAAAGTATCTCTAGCGTTGGCGAATATGGAAAAGGAACAAGC
CTTATTTCGAATGCAAGCTATGCAGCATAAGCTTGGGTTCATCACTGAAA
AATAG

Coding sequence (CDS) from alignment at tig00000019_pilon:255792..257396+

>Gchil2046.t1 ID=Gchil2046.t1|Name=Gchil2046.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1605bp|location=Sequence derived from alignment at tig00000019_pilon:255792..257396+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCAGAGAGTAAAGGATTTGATAAAACGATCAGGTTCAAGGATTAC
AGCTTCACAAGGTTCTGTCAAACATATAGGAACGACGCCATATCGCTTTC
GAATCGATATATTTGTATCAGTCGTTGAAAGAGTTCTGAACGCTGCGCAA
ATATGTGTCACGTGCGAACGAAGAGGAAACCGTCATGGCACGCAACCAGC
ACAAGTAGTAAACGGAAAGGCTGAGATTGGAGAAACAATAAGCTTGGAGT
GCACCTTATTTCGAAAGATACCAAAAACTGGAAAAGGAGCTGCTGCTTCT
GCGCCTCCTTCACCGTCAACTGATACTTCCGAGCTGCTATTTGATGAGAA
ATTGGCAAAGGTTGTGTTGAGGAAGGGAGCGGTTGACGGGAAGGCATTAG
GAAAGATAGCTGTCGACTTTTCAAAGTATATTAAGGGAACTACCAGCACT
GTATTTGCAGACCTTACCCTTTCAAATGGTTCAACAGTCATCACCAAGAT
TGAAGCCACGATGCTCCACATCGGCAAGAAATCGAAGACTGGTTCTCATG
CCGGCTCCGATACTTTGTCTGAGATCACAGACGTTTACCGGGATGACGAT
TCCATTTTCGGAGACCACGTTAGCGAAGACCTTGGTGATCTCGAGCAAGT
CACAAGGTCGTCGAACCCTTTAGCTAGGACTTTTTGCTCGAGCCCAGCTA
TGAGTCCTTCCTCCACTCTTACTTCCGCAGACTCACCACAGCGACTGCCT
TCTGCTAAGAGCAAGGCTAATACTTTTGTTGGTACCATTCCAAACCGGCA
GAAATCGCTTGCCACCGATTCGGTGAACAGCCAAGAGTCGTCGCATGAGC
TATCACCACTTGAACACTCAAAGCGTGAAAAAGGACCGGATGGAATGAGG
GAGAGTCCTTCCCTAAGAGACAAGTTGAAGACCAAGCTAAAGGAACGAAA
AGGAACTAAGCGAATCAAAGAACACAAGACTGACGAAGCAGAAACAAGAT
CCACTCCCCCTGTCAAGAACGCTACCACAACCCCGTCGAAACGAGAGAAA
GAAAAACATGCCATTCCACCGGAATTACTCTCTGAACTGAATGAACTCAA
AGCTCAAACAAAGGCGTTAAAGAAGGAGAACAGCAAGTTGAAAAATTCCA
ACCGAAACGCTCACGAGGAGATTAACGCGCTCAAGGCTGACTTGGAGGCC
CAGGAACTAGACCTGGAGGATGAAAAGAGTAAATCGGTGAGAGAAAAAAA
GACCGTTGTCACCAAAGCCGAACCAGAGCTTTCCAACACAATCAAAGAAA
AAGACAGAAGAATTGCAGAGCTCGAAGCCCAAAACGAAAGCCTTCTGGAG
GAGCTAGAAGAGCATCACGAGGAAAATGTTGAGTCCACCAAGCTGCATGA
AACAAGCAACAACAAGATCAAGGCGCTTAAGAAAAAGATCGAAGAGCTCG
AGATTGCACTTAAGAGAGAACCACGCTTCCTGGATGTCGTGAACGAATTG
AAGGTGACAAAAGTATCTCTAGCGTTGGCGAATATGGAAAAGGAACAAGC
CTTATTTCGAATGCAAGCTATGCAGCATAAGCTTGGGTTCATCACTGAAA
AATAG