Gchil2044.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2044.t1
Unique NameGchil2044.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:252986..254062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706305.1
Preferred nameGDPMP
PFAMsHexapep,NTP_transferase
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00966
KEGG ReactionR00885
KEGG Pathwayko00051,ko00520,ko01100,ko01110,map00051,map00520,map01100,map01110
KEGG ModuleM00114,M00361,M00362
Evalue8.04e-150
EggNOG OGsCOG1208@1|root,KOG1322@2759|Eukaryota
EC2.7.7.13
Descriptionmannose-1-phosphate guanylyltransferase activity
COG categoryJM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2044Gchil2044Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 252986..254062 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2044.t1.stop1Gchil2044.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 252986..252988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2044.t1.CDS1Gchil2044.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 252986..254062 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2044.t1.exon1Gchil2044.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 252986..254062 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2044.t1.start1Gchil2044.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 254060..254062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2044.t1Gchil2044.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 252986..254062 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2044.t1 ID=Gchil2044.t1|Name=Gchil2044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=359bp
MKALILVGGFGTRLRPLTLSVPKPLVHFCNKPMILHQIEALVAVGVTEVV
LAVNYQPEKMQSFLKEQAAKLGIKISTSQETEPLGTAGPIKLAEPFLNDG
EPFFVLNSDVSCEYPFEDMIAFQKKTNAAGVLMATPVEDPSKFGVILYEE
SGRIKDFVEKPKTFISRYINAGIYYLTPEVFDRIELQPTSIEKEVFPPMA
ADGLLYVMELKGFWADVGQPKDYLIGQSLKLSALSKRDPEALVAGERYTG
NVMVHPTAKIGQGCSIGPDVVIGANCIIGDGARIKSSTILPGTKIGMHSF
IEKSIIGWESSIGKWVRIEENSVLGEDVTVKDEFHLHSSIVLPHKGVKSS
LKPGTIVL*
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spliced messenger RNA

>Gchil2044.t1 ID=Gchil2044.t1|Name=Gchil2044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000019_pilon:252986..254062- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCCTTAATTCTCGTCGGTGGCTTTGGCACCCGTCTTCGTCCCCT
CACTCTTTCTGTGCCCAAGCCGCTGGTTCATTTCTGCAACAAGCCCATGA
TCTTGCACCAGATTGAGGCCCTGGTCGCCGTCGGTGTCACTGAAGTTGTG
CTTGCCGTGAATTATCAGCCCGAGAAGATGCAGAGCTTCCTCAAGGAACA
AGCTGCTAAATTGGGAATCAAGATCTCCACGTCGCAGGAGACGGAGCCGC
TTGGTACTGCCGGGCCCATCAAGCTCGCAGAGCCCTTCCTAAACGATGGT
GAGCCCTTCTTTGTTTTGAACTCCGATGTATCGTGCGAGTATCCGTTCGA
GGATATGATTGCCTTCCAGAAGAAGACAAATGCCGCAGGAGTGCTCATGG
CTACCCCCGTGGAGGATCCGTCTAAGTTTGGTGTCATCCTCTACGAAGAG
AGCGGCCGTATTAAGGACTTTGTAGAAAAGCCTAAAACTTTCATCTCGCG
CTACATTAATGCTGGTATTTACTATCTCACACCGGAGGTATTTGATCGTA
TTGAATTGCAACCCACTTCTATTGAGAAGGAAGTATTCCCGCCGATGGCT
GCCGATGGCTTGCTGTACGTCATGGAACTCAAAGGCTTCTGGGCCGACGT
AGGTCAGCCAAAAGATTATCTCATCGGCCAGTCTCTCAAGCTCTCAGCTC
TTTCAAAACGGGATCCGGAAGCGCTCGTCGCTGGGGAAAGGTACACGGGA
AATGTCATGGTGCATCCCACGGCAAAGATTGGACAGGGCTGCTCCATTGG
TCCAGATGTCGTCATTGGAGCTAATTGCATTATCGGGGATGGTGCACGAA
TCAAGTCCTCAACCATCTTACCAGGCACCAAGATTGGTATGCACTCCTTT
ATTGAAAAGAGTATAATTGGTTGGGAATCAAGCATAGGAAAATGGGTCCG
TATTGAAGAAAATTCCGTTCTTGGGGAGGACGTCACAGTCAAAGACGAAT
TCCACTTACACTCATCGATTGTTCTTCCTCACAAGGGTGTGAAGTCCAGC
TTGAAACCGGGAACCATCGTGTTGTGA
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protein sequence of Gchil2044.t1

>Gchil2044.t1 ID=Gchil2044.t1|Name=Gchil2044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=359bp
MKALILVGGFGTRLRPLTLSVPKPLVHFCNKPMILHQIEALVAVGVTEVV
LAVNYQPEKMQSFLKEQAAKLGIKISTSQETEPLGTAGPIKLAEPFLNDG
EPFFVLNSDVSCEYPFEDMIAFQKKTNAAGVLMATPVEDPSKFGVILYEE
SGRIKDFVEKPKTFISRYINAGIYYLTPEVFDRIELQPTSIEKEVFPPMA
ADGLLYVMELKGFWADVGQPKDYLIGQSLKLSALSKRDPEALVAGERYTG
NVMVHPTAKIGQGCSIGPDVVIGANCIIGDGARIKSSTILPGTKIGMHSF
IEKSIIGWESSIGKWVRIEENSVLGEDVTVKDEFHLHSSIVLPHKGVKSS
LKPGTIVL*
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mRNA from alignment at tig00000019_pilon:252986..254062-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2044.t1 ID=Gchil2044.t1|Name=Gchil2044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000019_pilon:252986..254062- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGCCTTAATTCTCGTCGGTGGCTTTGGCACCCGTCTTCGTCCCCT
CACTCTTTCTGTGCCCAAGCCGCTGGTTCATTTCTGCAACAAGCCCATGA
TCTTGCACCAGATTGAGGCCCTGGTCGCCGTCGGTGTCACTGAAGTTGTG
CTTGCCGTGAATTATCAGCCCGAGAAGATGCAGAGCTTCCTCAAGGAACA
AGCTGCTAAATTGGGAATCAAGATCTCCACGTCGCAGGAGACGGAGCCGC
TTGGTACTGCCGGGCCCATCAAGCTCGCAGAGCCCTTCCTAAACGATGGT
GAGCCCTTCTTTGTTTTGAACTCCGATGTATCGTGCGAGTATCCGTTCGA
GGATATGATTGCCTTCCAGAAGAAGACAAATGCCGCAGGAGTGCTCATGG
CTACCCCCGTGGAGGATCCGTCTAAGTTTGGTGTCATCCTCTACGAAGAG
AGCGGCCGTATTAAGGACTTTGTAGAAAAGCCTAAAACTTTCATCTCGCG
CTACATTAATGCTGGTATTTACTATCTCACACCGGAGGTATTTGATCGTA
TTGAATTGCAACCCACTTCTATTGAGAAGGAAGTATTCCCGCCGATGGCT
GCCGATGGCTTGCTGTACGTCATGGAACTCAAAGGCTTCTGGGCCGACGT
AGGTCAGCCAAAAGATTATCTCATCGGCCAGTCTCTCAAGCTCTCAGCTC
TTTCAAAACGGGATCCGGAAGCGCTCGTCGCTGGGGAAAGGTACACGGGA
AATGTCATGGTGCATCCCACGGCAAAGATTGGACAGGGCTGCTCCATTGG
TCCAGATGTCGTCATTGGAGCTAATTGCATTATCGGGGATGGTGCACGAA
TCAAGTCCTCAACCATCTTACCAGGCACCAAGATTGGTATGCACTCCTTT
ATTGAAAAGAGTATAATTGGTTGGGAATCAAGCATAGGAAAATGGGTCCG
TATTGAAGAAAATTCCGTTCTTGGGGAGGACGTCACAGTCAAAGACGAAT
TCCACTTACACTCATCGATTGTTCTTCCTCACAAGGGTGTGAAGTCCAGC
TTGAAACCGGGAACCATCGTGTTGTGA
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Coding sequence (CDS) from alignment at tig00000019_pilon:252986..254062-

>Gchil2044.t1 ID=Gchil2044.t1|Name=Gchil2044.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00000019_pilon:252986..254062- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGCCTTAATTCTCGTCGGTGGCTTTGGCACCCGTCTTCGTCCCCT
CACTCTTTCTGTGCCCAAGCCGCTGGTTCATTTCTGCAACAAGCCCATGA
TCTTGCACCAGATTGAGGCCCTGGTCGCCGTCGGTGTCACTGAAGTTGTG
CTTGCCGTGAATTATCAGCCCGAGAAGATGCAGAGCTTCCTCAAGGAACA
AGCTGCTAAATTGGGAATCAAGATCTCCACGTCGCAGGAGACGGAGCCGC
TTGGTACTGCCGGGCCCATCAAGCTCGCAGAGCCCTTCCTAAACGATGGT
GAGCCCTTCTTTGTTTTGAACTCCGATGTATCGTGCGAGTATCCGTTCGA
GGATATGATTGCCTTCCAGAAGAAGACAAATGCCGCAGGAGTGCTCATGG
CTACCCCCGTGGAGGATCCGTCTAAGTTTGGTGTCATCCTCTACGAAGAG
AGCGGCCGTATTAAGGACTTTGTAGAAAAGCCTAAAACTTTCATCTCGCG
CTACATTAATGCTGGTATTTACTATCTCACACCGGAGGTATTTGATCGTA
TTGAATTGCAACCCACTTCTATTGAGAAGGAAGTATTCCCGCCGATGGCT
GCCGATGGCTTGCTGTACGTCATGGAACTCAAAGGCTTCTGGGCCGACGT
AGGTCAGCCAAAAGATTATCTCATCGGCCAGTCTCTCAAGCTCTCAGCTC
TTTCAAAACGGGATCCGGAAGCGCTCGTCGCTGGGGAAAGGTACACGGGA
AATGTCATGGTGCATCCCACGGCAAAGATTGGACAGGGCTGCTCCATTGG
TCCAGATGTCGTCATTGGAGCTAATTGCATTATCGGGGATGGTGCACGAA
TCAAGTCCTCAACCATCTTACCAGGCACCAAGATTGGTATGCACTCCTTT
ATTGAAAAGAGTATAATTGGTTGGGAATCAAGCATAGGAAAATGGGTCCG
TATTGAAGAAAATTCCGTTCTTGGGGAGGACGTCACAGTCAAAGACGAAT
TCCACTTACACTCATCGATTGTTCTTCCTCACAAGGGTGTGAAGTCCAGC
TTGAAACCGGGAACCATCGTGTTGTGA
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