Gchil2041.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2041.t1
Unique NameGchil2041.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length631
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:236666..239310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709204.1
PFAMsLdh_1_C,Ldh_1_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00031
KEGG koko:K00025,ko:K00026
KEGG ReactionR00342,R07136
KEGG Pathwayko00020,ko00270,ko00620,ko00630,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04964,map00020,map00270,map00620,map00630,map00710,map01100,map01110,map01120,map01130,map01200,map04964
KEGG ModuleM00009,M00011,M00012,M00168,M00171
Evalue1.21e-126
EggNOG OGsCOG0039@1|root,KOG1496@2759|Eukaryota
EC1.1.1.37
Descriptionmalate metabolic process
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2041Gchil2041Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 236666..239310 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2041.t1Gchil2041.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 236666..239310 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2041.t1.stop1Gchil2041.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 236666..236668 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2041.t1.CDS1Gchil2041.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 236666..237639 -
Gchil2041.t1.CDS2Gchil2041.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 238392..239310 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2041.t1.exon1Gchil2041.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 236666..237639 -
Gchil2041.t1.exon2Gchil2041.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 238392..239310 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2041.t1.intron1Gchil2041.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000019_pilon 237640..238391 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2041.t1.start1Gchil2041.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 239308..239310 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2041.t1 ID=Gchil2041.t1|Name=Gchil2041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=631bp
MPVESDRHERKRKWDAPPSPDPALRPPPHADTPFREFEINDHPGRRFAMM
SANIKTVEARHNVVIVSKGRYISPAEPPPPPDAPDHERKLFLKIRGNQAA
DVDAAVQHLLSIMAYVERDRNEVHRVWADMDPVAVPSLDLLARLRGPDDQ
YLRFIERETGCTVSLAGRGSAPDYAGRENLHVSIRSPSAPASLKAKNLGL
SLVRTVQRVYDDYRHRYYAVAPPHRRSSARPHFTPTQHGAGSWLTGERYS
RYPDNEPPPPPSVLGGVAKPALHDAPPPPPHPVQVEIASHAPLPAMNAPV
PHGLRPTLTVCISGAAGQIAYSLLPLIARGDVFGSDQLIELRLLEIPPAL
DALHGVVMELRDCTFPLLTEIVETDDPMVAFQHADITILAGSFPRRPGME
RRDLIAKNVSIFKAQGQALDRVASKNVKVVVVGNPSNTNALVLSHFAPTI
PKQNITALTRLDQNRAMGQVALRTGVRVDQVDGVTIWGNHSASQYPDVTH
ATVNGEPALPKLGGRQSVAEDFIPCIQKRGAAVLKARGFSSAMSAANAIG
DHLRSWIVGDSKIVSMAVASDGSYDVKQGVYFSFPVRCVGGGEYEIVQGV
EMDEFSRKYVSATTEELFAERIEALELCAA*
back to top

spliced messenger RNA

>Gchil2041.t1 ID=Gchil2041.t1|Name=Gchil2041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1893bp|location=Sequence derived from alignment at tig00000019_pilon:236666..239310- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGTCGAAAGCGATCGCCACGAACGAAAACGAAAATGGGATGCTCC
ACCGTCTCCGGACCCCGCTCTTCGCCCTCCTCCGCACGCCGACACGCCGT
TTCGCGAGTTTGAGATCAACGACCACCCAGGTCGTCGCTTCGCCATGATG
TCTGCGAACATAAAAACTGTCGAAGCGCGTCATAACGTCGTCATTGTCTC
CAAGGGTCGATATATCTCTCCAGCTGAGCCGCCGCCGCCCCCCGACGCGC
CAGACCACGAAAGGAAGCTTTTTCTCAAGATTCGTGGTAACCAGGCTGCC
GATGTTGACGCCGCTGTGCAGCACTTACTTTCTATCATGGCCTACGTCGA
ACGTGACCGCAACGAGGTCCACCGTGTTTGGGCGGACATGGACCCCGTTG
CGGTACCATCTCTGGACCTACTTGCACGTTTGCGAGGTCCCGATGACCAA
TATTTGCGTTTCATCGAGCGGGAAACTGGCTGCACCGTGTCTCTAGCGGG
AAGAGGCTCTGCTCCGGACTATGCCGGCCGAGAAAACTTGCACGTTTCCA
TTAGATCACCTAGCGCACCAGCCTCGCTAAAGGCCAAGAATCTGGGGCTT
TCTCTCGTGCGCACTGTGCAACGGGTTTACGATGATTATCGCCATCGCTA
TTATGCAGTAGCCCCTCCGCATCGACGATCAAGTGCACGCCCACACTTCA
CACCGACTCAGCATGGCGCAGGCTCGTGGCTCACAGGCGAACGTTACTCG
CGGTATCCAGACAATGAACCACCGCCGCCTCCGTCCGTTTTGGGAGGGGT
TGCAAAACCCGCTCTTCACGATGCACCTCCACCGCCGCCTCACCCCGTTC
AGGTTGAAATCGCATCCCACGCCCCTCTGCCAGCAATGAATGCTCCTGTG
CCGCACGGCCTGCGGCCAACTCTCACCGTTTGCATTTCCGGCGCTGCCGG
TCAAATTGCGTACAGTCTGCTTCCTCTCATAGCCAGAGGTGATGTTTTCG
GAAGCGACCAACTCATCGAACTTCGTTTGCTCGAAATTCCGCCTGCTCTC
GACGCACTTCATGGCGTGGTCATGGAATTGCGAGACTGTACATTTCCGTT
GCTCACAGAGATAGTTGAGACGGATGACCCGATGGTAGCTTTTCAACACG
CCGATATAACTATTCTTGCTGGATCATTTCCTCGCCGCCCAGGTATGGAG
CGCCGAGACTTGATAGCCAAGAACGTTAGCATTTTCAAAGCTCAGGGACA
GGCCCTTGATCGTGTTGCATCCAAAAATGTGAAAGTGGTGGTGGTTGGGA
ACCCTTCCAACACCAACGCGCTGGTGTTGAGTCACTTTGCGCCTACCATT
CCCAAGCAAAATATCACCGCCTTAACAAGGCTGGACCAAAACCGCGCCAT
GGGACAAGTGGCTCTTCGTACAGGCGTGAGGGTGGACCAAGTAGATGGGG
TGACGATCTGGGGGAACCACTCTGCCAGCCAGTATCCTGATGTGACACAC
GCTACGGTGAATGGGGAGCCAGCTCTGCCGAAGCTCGGCGGGCGGCAGAG
TGTGGCGGAAGATTTCATCCCTTGCATTCAGAAGAGAGGTGCTGCCGTGC
TCAAAGCTAGGGGTTTCTCTTCGGCCATGTCGGCTGCGAATGCCATTGGG
GATCACCTGAGGAGCTGGATTGTGGGTGATTCAAAGATCGTGAGCATGGC
AGTGGCAAGTGATGGAAGCTATGACGTAAAACAGGGCGTTTATTTCTCAT
TCCCGGTGCGATGTGTGGGAGGGGGCGAATATGAGATTGTGCAAGGCGTT
GAAATGGATGAGTTTTCCCGAAAGTACGTTTCGGCCACTACCGAGGAATT
GTTTGCGGAACGGATTGAGGCTCTTGAACTATGTGCGGCATAA
back to top

protein sequence of Gchil2041.t1

>Gchil2041.t1 ID=Gchil2041.t1|Name=Gchil2041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=631bp
MPVESDRHERKRKWDAPPSPDPALRPPPHADTPFREFEINDHPGRRFAMM
SANIKTVEARHNVVIVSKGRYISPAEPPPPPDAPDHERKLFLKIRGNQAA
DVDAAVQHLLSIMAYVERDRNEVHRVWADMDPVAVPSLDLLARLRGPDDQ
YLRFIERETGCTVSLAGRGSAPDYAGRENLHVSIRSPSAPASLKAKNLGL
SLVRTVQRVYDDYRHRYYAVAPPHRRSSARPHFTPTQHGAGSWLTGERYS
RYPDNEPPPPPSVLGGVAKPALHDAPPPPPHPVQVEIASHAPLPAMNAPV
PHGLRPTLTVCISGAAGQIAYSLLPLIARGDVFGSDQLIELRLLEIPPAL
DALHGVVMELRDCTFPLLTEIVETDDPMVAFQHADITILAGSFPRRPGME
RRDLIAKNVSIFKAQGQALDRVASKNVKVVVVGNPSNTNALVLSHFAPTI
PKQNITALTRLDQNRAMGQVALRTGVRVDQVDGVTIWGNHSASQYPDVTH
ATVNGEPALPKLGGRQSVAEDFIPCIQKRGAAVLKARGFSSAMSAANAIG
DHLRSWIVGDSKIVSMAVASDGSYDVKQGVYFSFPVRCVGGGEYEIVQGV
EMDEFSRKYVSATTEELFAERIEALELCAA*
back to top

mRNA from alignment at tig00000019_pilon:236666..239310-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2041.t1 ID=Gchil2041.t1|Name=Gchil2041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2645bp|location=Sequence derived from alignment at tig00000019_pilon:236666..239310- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGTCGAAAGCGATCGCCACGAACGAAAACGAAAATGGGATGCTCC
ACCGTCTCCGGACCCCGCTCTTCGCCCTCCTCCGCACGCCGACACGCCGT
TTCGCGAGTTTGAGATCAACGACCACCCAGGTCGTCGCTTCGCCATGATG
TCTGCGAACATAAAAACTGTCGAAGCGCGTCATAACGTCGTCATTGTCTC
CAAGGGTCGATATATCTCTCCAGCTGAGCCGCCGCCGCCCCCCGACGCGC
CAGACCACGAAAGGAAGCTTTTTCTCAAGATTCGTGGTAACCAGGCTGCC
GATGTTGACGCCGCTGTGCAGCACTTACTTTCTATCATGGCCTACGTCGA
ACGTGACCGCAACGAGGTCCACCGTGTTTGGGCGGACATGGACCCCGTTG
CGGTACCATCTCTGGACCTACTTGCACGTTTGCGAGGTCCCGATGACCAA
TATTTGCGTTTCATCGAGCGGGAAACTGGCTGCACCGTGTCTCTAGCGGG
AAGAGGCTCTGCTCCGGACTATGCCGGCCGAGAAAACTTGCACGTTTCCA
TTAGATCACCTAGCGCACCAGCCTCGCTAAAGGCCAAGAATCTGGGGCTT
TCTCTCGTGCGCACTGTGCAACGGGTTTACGATGATTATCGCCATCGCTA
TTATGCAGTAGCCCCTCCGCATCGACGATCAAGTGCACGCCCACACTTCA
CACCGACTCAGCATGGCGCAGGCTCGTGGCTCACAGGCGAACGTTACTCG
CGGTATCCAGACAATGAACCACCGCCGCCTCCGTCCGTTTTGGGAGGGGT
TGCAAAACCCGCTCTTCACGATGCACCTCCACCGCCGCCTCACCCCGTTC
AGGTTGAAATCGCATCCCACGCCCCTCTGCCAGCAATGAATGCTCCTGTG
CCGCACGGCCTGCGGCCAAGTACGGTCGCGCCGCCTCCGCCGCCTCCCCC
ACCGCCGCCGCCGCCTCCACCACCGCCTCCCCCCCCGCCACCACCTCCGC
CTCCGCCGCCGCCACCACCTCCACCTCCGCCGCCACCACTATGAGTCATG
ACATGACGAAGCAGCTTTCAAATTGTTTTGGCACGCATGAAAGTGGGGGT
TGGCTATCGATGGAGGAGGCAACGAGACCTTCCCAGTCCATCAGTGGATA
CTCGCGGTTTCAGTGCCGATGATGGCCTTATTGCTGAAAGTCGTGTGATC
ACGCCCGATTCCGCCTCCAAAGTGGCTGTGTATCGTTCTCGGCACATGAC
AGGCTGTACGAAAGTGGCAGGACATCGCGAACGCCACCAGTTGCATAGTG
TTGCTGCTGGTGAGTCGCAATTGGTCAGCATTGAGTGGATTGCATTTTGT
GCGTTTTTCTGTTATCGTGCTCCATTTTGATACGAACCCCGCCTGGTGAT
ATCATAGTTGCGCATATGAAGGACAAGTCTCATCCTCTCCCTCCGCGCAT
AGCAGCCTCTGTCCTTCCAATACTTCCACGCTGTCCATTCACCATACCCG
GGTGCGCTTGGTTCACACACCCCGTCCGTATAAAAGAGGGTTAGACTGAA
ATCATTTCTTACGGTTCCGCCACACACTGCCCATCCTCAGCTTCACGTTT
CCTTCCCTGCCTTCACATATTTCCCGGAACGCCCTTGTGAACAATGTGCC
AACCGCACAAATCCAGTAAAGCTCTCACCGTTTGCATTTCCGGCGCTGCC
GGTCAAATTGCGTACAGTCTGCTTCCTCTCATAGCCAGAGGTGATGTTTT
CGGAAGCGACCAACTCATCGAACTTCGTTTGCTCGAAATTCCGCCTGCTC
TCGACGCACTTCATGGCGTGGTCATGGAATTGCGAGACTGTACATTTCCG
TTGCTCACAGAGATAGTTGAGACGGATGACCCGATGGTAGCTTTTCAACA
CGCCGATATAACTATTCTTGCTGGATCATTTCCTCGCCGCCCAGGTATGG
AGCGCCGAGACTTGATAGCCAAGAACGTTAGCATTTTCAAAGCTCAGGGA
CAGGCCCTTGATCGTGTTGCATCCAAAAATGTGAAAGTGGTGGTGGTTGG
GAACCCTTCCAACACCAACGCGCTGGTGTTGAGTCACTTTGCGCCTACCA
TTCCCAAGCAAAATATCACCGCCTTAACAAGGCTGGACCAAAACCGCGCC
ATGGGACAAGTGGCTCTTCGTACAGGCGTGAGGGTGGACCAAGTAGATGG
GGTGACGATCTGGGGGAACCACTCTGCCAGCCAGTATCCTGATGTGACAC
ACGCTACGGTGAATGGGGAGCCAGCTCTGCCGAAGCTCGGCGGGCGGCAG
AGTGTGGCGGAAGATTTCATCCCTTGCATTCAGAAGAGAGGTGCTGCCGT
GCTCAAAGCTAGGGGTTTCTCTTCGGCCATGTCGGCTGCGAATGCCATTG
GGGATCACCTGAGGAGCTGGATTGTGGGTGATTCAAAGATCGTGAGCATG
GCAGTGGCAAGTGATGGAAGCTATGACGTAAAACAGGGCGTTTATTTCTC
ATTCCCGGTGCGATGTGTGGGAGGGGGCGAATATGAGATTGTGCAAGGCG
TTGAAATGGATGAGTTTTCCCGAAAGTACGTTTCGGCCACTACCGAGGAA
TTGTTTGCGGAACGGATTGAGGCTCTTGAACTATGTGCGGCATAA
back to top

Coding sequence (CDS) from alignment at tig00000019_pilon:236666..239310-

>Gchil2041.t1 ID=Gchil2041.t1|Name=Gchil2041.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1893bp|location=Sequence derived from alignment at tig00000019_pilon:236666..239310- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCGTCGAAAGCGATCGCCACGAACGAAAACGAAAATGGGATGCTCC
ACCGTCTCCGGACCCCGCTCTTCGCCCTCCTCCGCACGCCGACACGCCGT
TTCGCGAGTTTGAGATCAACGACCACCCAGGTCGTCGCTTCGCCATGATG
TCTGCGAACATAAAAACTGTCGAAGCGCGTCATAACGTCGTCATTGTCTC
CAAGGGTCGATATATCTCTCCAGCTGAGCCGCCGCCGCCCCCCGACGCGC
CAGACCACGAAAGGAAGCTTTTTCTCAAGATTCGTGGTAACCAGGCTGCC
GATGTTGACGCCGCTGTGCAGCACTTACTTTCTATCATGGCCTACGTCGA
ACGTGACCGCAACGAGGTCCACCGTGTTTGGGCGGACATGGACCCCGTTG
CGGTACCATCTCTGGACCTACTTGCACGTTTGCGAGGTCCCGATGACCAA
TATTTGCGTTTCATCGAGCGGGAAACTGGCTGCACCGTGTCTCTAGCGGG
AAGAGGCTCTGCTCCGGACTATGCCGGCCGAGAAAACTTGCACGTTTCCA
TTAGATCACCTAGCGCACCAGCCTCGCTAAAGGCCAAGAATCTGGGGCTT
TCTCTCGTGCGCACTGTGCAACGGGTTTACGATGATTATCGCCATCGCTA
TTATGCAGTAGCCCCTCCGCATCGACGATCAAGTGCACGCCCACACTTCA
CACCGACTCAGCATGGCGCAGGCTCGTGGCTCACAGGCGAACGTTACTCG
CGGTATCCAGACAATGAACCACCGCCGCCTCCGTCCGTTTTGGGAGGGGT
TGCAAAACCCGCTCTTCACGATGCACCTCCACCGCCGCCTCACCCCGTTC
AGGTTGAAATCGCATCCCACGCCCCTCTGCCAGCAATGAATGCTCCTGTG
CCGCACGGCCTGCGGCCAACTCTCACCGTTTGCATTTCCGGCGCTGCCGG
TCAAATTGCGTACAGTCTGCTTCCTCTCATAGCCAGAGGTGATGTTTTCG
GAAGCGACCAACTCATCGAACTTCGTTTGCTCGAAATTCCGCCTGCTCTC
GACGCACTTCATGGCGTGGTCATGGAATTGCGAGACTGTACATTTCCGTT
GCTCACAGAGATAGTTGAGACGGATGACCCGATGGTAGCTTTTCAACACG
CCGATATAACTATTCTTGCTGGATCATTTCCTCGCCGCCCAGGTATGGAG
CGCCGAGACTTGATAGCCAAGAACGTTAGCATTTTCAAAGCTCAGGGACA
GGCCCTTGATCGTGTTGCATCCAAAAATGTGAAAGTGGTGGTGGTTGGGA
ACCCTTCCAACACCAACGCGCTGGTGTTGAGTCACTTTGCGCCTACCATT
CCCAAGCAAAATATCACCGCCTTAACAAGGCTGGACCAAAACCGCGCCAT
GGGACAAGTGGCTCTTCGTACAGGCGTGAGGGTGGACCAAGTAGATGGGG
TGACGATCTGGGGGAACCACTCTGCCAGCCAGTATCCTGATGTGACACAC
GCTACGGTGAATGGGGAGCCAGCTCTGCCGAAGCTCGGCGGGCGGCAGAG
TGTGGCGGAAGATTTCATCCCTTGCATTCAGAAGAGAGGTGCTGCCGTGC
TCAAAGCTAGGGGTTTCTCTTCGGCCATGTCGGCTGCGAATGCCATTGGG
GATCACCTGAGGAGCTGGATTGTGGGTGATTCAAAGATCGTGAGCATGGC
AGTGGCAAGTGATGGAAGCTATGACGTAAAACAGGGCGTTTATTTCTCAT
TCCCGGTGCGATGTGTGGGAGGGGGCGAATATGAGATTGTGCAAGGCGTT
GAAATGGATGAGTTTTCCCGAAAGTACGTTTCGGCCACTACCGAGGAATT
GTTTGCGGAACGGATTGAGGCTCTTGAACTATGTGCGGCATAA
back to top