Gchil2038.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2038.t1
Unique NameGchil2038.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:234569..235075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4952.CAG83007
Preferred nameALG14
PFAMsAlg14
Max annot lvl4751|Fungi
KEGG koko:K07441
KEGG ReactionR05970
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00055
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043495,GO:0043541,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue2.67e-31
EggNOG OGsKOG3339@1|root,KOG3339@2759|Eukaryota,38Z55@33154|Opisthokonta,3P4FV@4751|Fungi,3QW29@4890|Ascomycota,3RV9Y@4891|Saccharomycetes
EC2.4.1.141
DescriptionInvolved in protein N-glycosylation. Essential for the second step of the dolichol-linked oligosaccharide pathway. Anchors the catalytic subunit ALG13 to the ER
COG categoryS
CAZyGT1
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2038Gchil2038Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 234569..235075 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2038.t1.start1Gchil2038.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 234569..234571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2038.t1.CDS1Gchil2038.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 234569..235075 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2038.t1.exon1Gchil2038.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 234569..235075 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2038.t1.stop1Gchil2038.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 235073..235075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2038.t1Gchil2038.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 234569..235075 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2038.t1 ID=Gchil2038.t1|Name=Gchil2038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=169bp
MLSLLRDLLPRQPCAPVVFVVGATDNHSLQKAAHVYRAHHHPRCTAHGAH
VPRYRVIPRAREVHQSLCSSVLSTAAAFVAALRVLLRDRPALVLCNGPAN
AAVVAFAAFVCRVLGVLHCRVVYVESFARVLSLSLSGRLLLPFVDRFIVQ
WPQLTDKYALAEYYGRLC*
back to top

spliced messenger RNA

>Gchil2038.t1 ID=Gchil2038.t1|Name=Gchil2038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000019_pilon:234569..235075+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCGCTGTTGCGCGATTTGTTGCCGCGCCAGCCGTGCGCTCCGGT
GGTGTTTGTGGTGGGCGCTACCGACAATCACTCCTTGCAAAAGGCCGCGC
ACGTCTACCGGGCGCATCATCACCCGCGCTGCACCGCGCATGGCGCGCAT
GTGCCGCGCTATCGCGTCATTCCTCGCGCGCGCGAGGTCCATCAGTCTTT
GTGTTCCTCCGTGCTGTCCACTGCGGCTGCATTTGTTGCCGCGCTGCGCG
TGTTGCTGCGAGATCGTCCCGCACTTGTGCTGTGCAACGGTCCGGCCAAT
GCTGCCGTCGTCGCGTTTGCTGCCTTTGTGTGCCGTGTGCTTGGCGTGTT
GCACTGTCGCGTCGTCTACGTTGAAAGTTTTGCGCGCGTGCTATCGCTCA
GTCTGTCCGGTCGCTTGTTGCTGCCGTTTGTGGATCGGTTTATTGTTCAG
TGGCCGCAGCTCACGGACAAGTATGCGCTGGCCGAGTACTACGGCCGTCT
GTGCTGA
back to top

protein sequence of Gchil2038.t1

>Gchil2038.t1 ID=Gchil2038.t1|Name=Gchil2038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=169bp
MLSLLRDLLPRQPCAPVVFVVGATDNHSLQKAAHVYRAHHHPRCTAHGAH
VPRYRVIPRAREVHQSLCSSVLSTAAAFVAALRVLLRDRPALVLCNGPAN
AAVVAFAAFVCRVLGVLHCRVVYVESFARVLSLSLSGRLLLPFVDRFIVQ
WPQLTDKYALAEYYGRLC*
back to top

mRNA from alignment at tig00000019_pilon:234569..235075+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2038.t1 ID=Gchil2038.t1|Name=Gchil2038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000019_pilon:234569..235075+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGTCGCTGTTGCGCGATTTGTTGCCGCGCCAGCCGTGCGCTCCGGT
GGTGTTTGTGGTGGGCGCTACCGACAATCACTCCTTGCAAAAGGCCGCGC
ACGTCTACCGGGCGCATCATCACCCGCGCTGCACCGCGCATGGCGCGCAT
GTGCCGCGCTATCGCGTCATTCCTCGCGCGCGCGAGGTCCATCAGTCTTT
GTGTTCCTCCGTGCTGTCCACTGCGGCTGCATTTGTTGCCGCGCTGCGCG
TGTTGCTGCGAGATCGTCCCGCACTTGTGCTGTGCAACGGTCCGGCCAAT
GCTGCCGTCGTCGCGTTTGCTGCCTTTGTGTGCCGTGTGCTTGGCGTGTT
GCACTGTCGCGTCGTCTACGTTGAAAGTTTTGCGCGCGTGCTATCGCTCA
GTCTGTCCGGTCGCTTGTTGCTGCCGTTTGTGGATCGGTTTATTGTTCAG
TGGCCGCAGCTCACGGACAAGTATGCGCTGGCCGAGTACTACGGCCGTCT
GTGCTGA
back to top

Coding sequence (CDS) from alignment at tig00000019_pilon:234569..235075+

>Gchil2038.t1 ID=Gchil2038.t1|Name=Gchil2038.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=507bp|location=Sequence derived from alignment at tig00000019_pilon:234569..235075+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGTCGCTGTTGCGCGATTTGTTGCCGCGCCAGCCGTGCGCTCCGGT
GGTGTTTGTGGTGGGCGCTACCGACAATCACTCCTTGCAAAAGGCCGCGC
ACGTCTACCGGGCGCATCATCACCCGCGCTGCACCGCGCATGGCGCGCAT
GTGCCGCGCTATCGCGTCATTCCTCGCGCGCGCGAGGTCCATCAGTCTTT
GTGTTCCTCCGTGCTGTCCACTGCGGCTGCATTTGTTGCCGCGCTGCGCG
TGTTGCTGCGAGATCGTCCCGCACTTGTGCTGTGCAACGGTCCGGCCAAT
GCTGCCGTCGTCGCGTTTGCTGCCTTTGTGTGCCGTGTGCTTGGCGTGTT
GCACTGTCGCGTCGTCTACGTTGAAAGTTTTGCGCGCGTGCTATCGCTCA
GTCTGTCCGGTCGCTTGTTGCTGCCGTTTGTGGATCGGTTTATTGTTCAG
TGGCCGCAGCTCACGGACAAGTATGCGCTGGCCGAGTACTACGGCCGTCT
GTGCTGA
back to top