Gchil2033.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2033.t1
Unique NameGchil2033.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:119432..120409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD39312
Max annot lvl2759|Eukaryota
Evalue3.52e-26
EggNOG OGs2EXBI@1|root,2SZ19@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2033Gchil2033Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 119432..120409 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2033.t1.stop1Gchil2033.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 119432..119434 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2033.t1.CDS1Gchil2033.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 119432..120409 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2033.t1.exon1Gchil2033.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 119432..120409 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2033.t1.start1Gchil2033.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 120407..120409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2033.t1Gchil2033.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 119432..120409 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2033.t1 ID=Gchil2033.t1|Name=Gchil2033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=326bp
MTLTATPPPATTATKPRARLRTRSLAAVLASVALLLTPLLITHAPILTTS
SSSHFDRVAIAARHDWTTATPPPECTAIFAKLATQRVCPPHTQQSCRAPL
RWDAFRLGSVWMFSQFGQDAYLFARHFRALARRGVYVDAASNQPVKLSNS
YFYDRCLGWKGVCVEANPMYYEPTFRRRSCLLVPTCAGAADNESVRFVRR
GELGGVVGDSYKFGNGTQGEVVEMRCIRLQSVLDRARISHVDFLSVDVEG
HELQVLHGIDWKRTRVDIISVEVTPSFEGVQRFLQGLGYVQHVVGKESEI
SPVGNGFLGMDAIFLRADVTLGSPR*
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spliced messenger RNA

>Gchil2033.t1 ID=Gchil2033.t1|Name=Gchil2033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000019_pilon:119432..120409- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTGACTGCTACCCCGCCTCCCGCCACCACCGCCACCAAGCCACG
CGCGCGCCTGCGCACCCGCTCGTTGGCCGCCGTGTTGGCGTCAGTGGCGC
TGCTACTCACGCCGCTACTCATCACGCACGCCCCGATCCTCACCACCTCG
TCGTCCTCACATTTTGACCGCGTCGCTATAGCCGCGCGTCACGATTGGAC
AACAGCCACGCCGCCGCCCGAGTGCACTGCCATCTTTGCCAAGCTCGCCA
CGCAGCGCGTGTGTCCGCCACACACGCAGCAAAGCTGTCGCGCCCCGCTT
CGTTGGGATGCGTTCCGACTGGGATCAGTGTGGATGTTCTCGCAGTTCGG
ACAAGATGCTTACTTGTTTGCACGACACTTTCGCGCGTTGGCACGACGAG
GCGTGTATGTGGATGCGGCATCGAATCAACCAGTGAAACTGTCCAACTCG
TACTTTTATGACAGATGTCTTGGCTGGAAAGGCGTGTGTGTGGAGGCCAA
CCCGATGTATTACGAGCCTACTTTTCGTCGCCGATCGTGCCTGCTCGTGC
CGACTTGTGCCGGTGCTGCAGACAACGAGAGCGTGCGCTTCGTGAGAAGG
GGCGAGCTGGGTGGCGTCGTAGGCGACTCGTACAAGTTTGGCAATGGCAC
GCAGGGAGAAGTGGTGGAAATGCGCTGCATCCGACTACAAAGCGTGCTTG
ATCGAGCGCGCATCTCCCACGTGGACTTTCTCAGCGTCGACGTAGAGGGC
CACGAGCTCCAGGTGTTACACGGCATCGATTGGAAGCGCACGCGTGTGGA
CATCATCTCCGTGGAGGTTACTCCCAGCTTCGAGGGTGTGCAACGCTTCT
TGCAGGGCTTGGGGTACGTGCAACATGTGGTCGGAAAGGAGAGTGAGATC
TCGCCAGTGGGTAACGGCTTTTTGGGTATGGATGCTATCTTTTTGCGAGC
TGACGTCACGCTTGGCTCGCCGCGTTGA
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protein sequence of Gchil2033.t1

>Gchil2033.t1 ID=Gchil2033.t1|Name=Gchil2033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=326bp
MTLTATPPPATTATKPRARLRTRSLAAVLASVALLLTPLLITHAPILTTS
SSSHFDRVAIAARHDWTTATPPPECTAIFAKLATQRVCPPHTQQSCRAPL
RWDAFRLGSVWMFSQFGQDAYLFARHFRALARRGVYVDAASNQPVKLSNS
YFYDRCLGWKGVCVEANPMYYEPTFRRRSCLLVPTCAGAADNESVRFVRR
GELGGVVGDSYKFGNGTQGEVVEMRCIRLQSVLDRARISHVDFLSVDVEG
HELQVLHGIDWKRTRVDIISVEVTPSFEGVQRFLQGLGYVQHVVGKESEI
SPVGNGFLGMDAIFLRADVTLGSPR*
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mRNA from alignment at tig00000019_pilon:119432..120409-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2033.t1 ID=Gchil2033.t1|Name=Gchil2033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000019_pilon:119432..120409- (Gracilaria chilensis NLEC103_M9 male)
ATGACGCTGACTGCTACCCCGCCTCCCGCCACCACCGCCACCAAGCCACG
CGCGCGCCTGCGCACCCGCTCGTTGGCCGCCGTGTTGGCGTCAGTGGCGC
TGCTACTCACGCCGCTACTCATCACGCACGCCCCGATCCTCACCACCTCG
TCGTCCTCACATTTTGACCGCGTCGCTATAGCCGCGCGTCACGATTGGAC
AACAGCCACGCCGCCGCCCGAGTGCACTGCCATCTTTGCCAAGCTCGCCA
CGCAGCGCGTGTGTCCGCCACACACGCAGCAAAGCTGTCGCGCCCCGCTT
CGTTGGGATGCGTTCCGACTGGGATCAGTGTGGATGTTCTCGCAGTTCGG
ACAAGATGCTTACTTGTTTGCACGACACTTTCGCGCGTTGGCACGACGAG
GCGTGTATGTGGATGCGGCATCGAATCAACCAGTGAAACTGTCCAACTCG
TACTTTTATGACAGATGTCTTGGCTGGAAAGGCGTGTGTGTGGAGGCCAA
CCCGATGTATTACGAGCCTACTTTTCGTCGCCGATCGTGCCTGCTCGTGC
CGACTTGTGCCGGTGCTGCAGACAACGAGAGCGTGCGCTTCGTGAGAAGG
GGCGAGCTGGGTGGCGTCGTAGGCGACTCGTACAAGTTTGGCAATGGCAC
GCAGGGAGAAGTGGTGGAAATGCGCTGCATCCGACTACAAAGCGTGCTTG
ATCGAGCGCGCATCTCCCACGTGGACTTTCTCAGCGTCGACGTAGAGGGC
CACGAGCTCCAGGTGTTACACGGCATCGATTGGAAGCGCACGCGTGTGGA
CATCATCTCCGTGGAGGTTACTCCCAGCTTCGAGGGTGTGCAACGCTTCT
TGCAGGGCTTGGGGTACGTGCAACATGTGGTCGGAAAGGAGAGTGAGATC
TCGCCAGTGGGTAACGGCTTTTTGGGTATGGATGCTATCTTTTTGCGAGC
TGACGTCACGCTTGGCTCGCCGCGTTGA
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Coding sequence (CDS) from alignment at tig00000019_pilon:119432..120409-

>Gchil2033.t1 ID=Gchil2033.t1|Name=Gchil2033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00000019_pilon:119432..120409- (Gracilaria chilensis NLEC103_M9 male)
ATGACGCTGACTGCTACCCCGCCTCCCGCCACCACCGCCACCAAGCCACG
CGCGCGCCTGCGCACCCGCTCGTTGGCCGCCGTGTTGGCGTCAGTGGCGC
TGCTACTCACGCCGCTACTCATCACGCACGCCCCGATCCTCACCACCTCG
TCGTCCTCACATTTTGACCGCGTCGCTATAGCCGCGCGTCACGATTGGAC
AACAGCCACGCCGCCGCCCGAGTGCACTGCCATCTTTGCCAAGCTCGCCA
CGCAGCGCGTGTGTCCGCCACACACGCAGCAAAGCTGTCGCGCCCCGCTT
CGTTGGGATGCGTTCCGACTGGGATCAGTGTGGATGTTCTCGCAGTTCGG
ACAAGATGCTTACTTGTTTGCACGACACTTTCGCGCGTTGGCACGACGAG
GCGTGTATGTGGATGCGGCATCGAATCAACCAGTGAAACTGTCCAACTCG
TACTTTTATGACAGATGTCTTGGCTGGAAAGGCGTGTGTGTGGAGGCCAA
CCCGATGTATTACGAGCCTACTTTTCGTCGCCGATCGTGCCTGCTCGTGC
CGACTTGTGCCGGTGCTGCAGACAACGAGAGCGTGCGCTTCGTGAGAAGG
GGCGAGCTGGGTGGCGTCGTAGGCGACTCGTACAAGTTTGGCAATGGCAC
GCAGGGAGAAGTGGTGGAAATGCGCTGCATCCGACTACAAAGCGTGCTTG
ATCGAGCGCGCATCTCCCACGTGGACTTTCTCAGCGTCGACGTAGAGGGC
CACGAGCTCCAGGTGTTACACGGCATCGATTGGAAGCGCACGCGTGTGGA
CATCATCTCCGTGGAGGTTACTCCCAGCTTCGAGGGTGTGCAACGCTTCT
TGCAGGGCTTGGGGTACGTGCAACATGTGGTCGGAAAGGAGAGTGAGATC
TCGCCAGTGGGTAACGGCTTTTTGGGTATGGATGCTATCTTTTTGCGAGC
TGACGTCACGCTTGGCTCGCCGCGTTGA
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