Gchil2027.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2027.t1
Unique NameGchil2027.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length140
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1775780..1776199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000020167
PFAMsAcetyltransf_1
Max annot lvl121069|Pythiales
Evalue2.99e-10
EggNOG OGsKOG2488@1|root,KOG2488@2759|Eukaryota,1MDKH@121069|Pythiales
DescriptionN-acetyltransferase. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2027Gchil2027Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1775780..1776199 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2027.t1.start1Gchil2027.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1775780..1775782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2027.t1.CDS1Gchil2027.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1775780..1776199 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2027.t1.exon1Gchil2027.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1775780..1776199 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2027.t1.stop1Gchil2027.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1776197..1776199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2027.t1Gchil2027.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1775780..1776199 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2027.t1 ID=Gchil2027.t1|Name=Gchil2027.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=140bp
MLHALERCERHLYDASTYKWSAVRKRAELAHVHHRYLLVRHVAPQSSSSS
SSSSSASASSLPPPPPIAFLAFRWDLDDGRPVMYVYELFVRAAYRRRGLA
VALMRCAETLCRAASIPYIVLTVFSANEPALNLYRHKLA*
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spliced messenger RNA

>Gchil2027.t1 ID=Gchil2027.t1|Name=Gchil2027.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=420bp|location=Sequence derived from alignment at tig00004439_pilon:1775780..1776199+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACACGCGCTGGAGCGCTGCGAGCGTCATCTGTACGACGCGTCCAC
CTACAAGTGGAGCGCCGTCCGCAAGCGCGCCGAGCTCGCGCACGTCCACC
ATCGCTACCTTCTGGTGCGCCACGTCGCCCCCCAGtcgtcctcgtcctcg
tcctcgtcctcgtccgcgtccgcgtcctcgCTGCCGCCGCCGCCGCCCAT
CGCGTTCCTCGCGTTTCGTTGGGATCTCGACGACGGCCGCCCCGTCATGT
ATGTGTACGAGCTCTTCGTGCGCGCCGCGTATCGCCGCCGCGGCCTGGCT
GTCGCGCTCATGCGCTGCGCCGAGACGCTTTGTCGCGCCGCGAGCATCCC
GTACATCGTGCTCACCGTGTTTAGCGCCAACGAGCCCGCCCTCAATCTCT
ACCGCCACAAGCTTGCGTAA
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protein sequence of Gchil2027.t1

>Gchil2027.t1 ID=Gchil2027.t1|Name=Gchil2027.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=140bp
MLHALERCERHLYDASTYKWSAVRKRAELAHVHHRYLLVRHVAPQSSSSS
SSSSSASASSLPPPPPIAFLAFRWDLDDGRPVMYVYELFVRAAYRRRGLA
VALMRCAETLCRAASIPYIVLTVFSANEPALNLYRHKLA*
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mRNA from alignment at tig00004439_pilon:1775780..1776199+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2027.t1 ID=Gchil2027.t1|Name=Gchil2027.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=420bp|location=Sequence derived from alignment at tig00004439_pilon:1775780..1776199+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTACACGCGCTGGAGCGCTGCGAGCGTCATCTGTACGACGCGTCCAC
CTACAAGTGGAGCGCCGTCCGCAAGCGCGCCGAGCTCGCGCACGTCCACC
ATCGCTACCTTCTGGTGCGCCACGTCGCCCCCCAGtcgtcctcgtcctcg
tcctcgtcctcgtccgcgtccgcgtcctcgCTGCCGCCGCCGCCGCCCAT
CGCGTTCCTCGCGTTTCGTTGGGATCTCGACGACGGCCGCCCCGTCATGT
ATGTGTACGAGCTCTTCGTGCGCGCCGCGTATCGCCGCCGCGGCCTGGCT
GTCGCGCTCATGCGCTGCGCCGAGACGCTTTGTCGCGCCGCGAGCATCCC
GTACATCGTGCTCACCGTGTTTAGCGCCAACGAGCCCGCCCTCAATCTCT
ACCGCCACAAGCTTGCGTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1775780..1776199+

>Gchil2027.t1 ID=Gchil2027.t1|Name=Gchil2027.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=420bp|location=Sequence derived from alignment at tig00004439_pilon:1775780..1776199+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTACACGCGCTGGAGCGCTGCGAGCGTCATCTGTACGACGCGTCCAC
CTACAAGTGGAGCGCCGTCCGCAAGCGCGCCGAGCTCGCGCACGTCCACC
ATCGCTACCTTCTGGTGCGCCACGTCGCCCCCCAGtcgtcctcgtcctcg
tcctcgtcctcgtccgcgtccgcgtcctcgCTGCCGCCGCCGCCGCCCAT
CGCGTTCCTCGCGTTTCGTTGGGATCTCGACGACGGCCGCCCCGTCATGT
ATGTGTACGAGCTCTTCGTGCGCGCCGCGTATCGCCGCCGCGGCCTGGCT
GTCGCGCTCATGCGCTGCGCCGAGACGCTTTGTCGCGCCGCGAGCATCCC
GTACATCGTGCTCACCGTGTTTAGCGCCAACGAGCCCGCCCTCAATCTCT
ACCGCCACAAGCTTGCGTAA
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