Gchil2024.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2024.t1
Unique NameGchil2024.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1766002..1767651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703958.1
Preferred namesrk1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
GOsGO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue2.27e-40
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2024Gchil2024Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1766002..1767651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2024.t1Gchil2024.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1766002..1767651 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2024.t1.stop1Gchil2024.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1766002..1766004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2024.t1.CDS1Gchil2024.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1766002..1766133 -
Gchil2024.t1.CDS2Gchil2024.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1766259..1766349 -
Gchil2024.t1.CDS3Gchil2024.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1767107..1767651 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2024.t1.exon1Gchil2024.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1766002..1766133 -
Gchil2024.t1.exon2Gchil2024.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1766259..1766349 -
Gchil2024.t1.exon3Gchil2024.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1767107..1767651 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2024.t1.intron1Gchil2024.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1766134..1766258 -
Gchil2024.t1.intron2Gchil2024.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1766350..1767106 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2024.t1.start1Gchil2024.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1767649..1767651 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2024.t1 ID=Gchil2024.t1|Name=Gchil2024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=256bp
MATLRHGPPVFRSGWLKKEGTDGKHWDRFMRLSGTALSNSHSDVEQPSWS
ISLLENPVTIGPRPLEIQIQLRRRTLSYFVSDEQDYRAWQHALTRAMEMR
IDNFYKFGHVLGEGSFATVRLARDIVTDQQFAVKIVHKDMYKPEELLWVM
REVKIMMNVQHANIVDTYDIFDSRDHLHLVIEYGTFESTIDSTLSRCKFV
GNFEQLETPTPQHHERSNMWSSMKFRHSYLTLSQCRWEMCQTVSFSFPML
AVKKL*
back to top

spliced messenger RNA

>Gchil2024.t1 ID=Gchil2024.t1|Name=Gchil2024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00004439_pilon:1766002..1767651- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACGCTTCGCCATGGCCCGCCCGTCTTTCGCTCCGGCTGGCTGAA
GAAAGAGGGCACCGACGGAAAGCACTGGGACCGCTTCATGCGCCTCAGCG
GCACCGCCCTGTCCAACAGTCACTCCGACGTCGAGCAGCCGTCCTGGTCC
ATCAGCCTACTTGAGAACCCCGTCACCATCGGCCCGCGCCCTCTTGAGAT
TCAGATCCAGCTGCGTCGCCGCACCCTCAGCTACTTTGTCAGCGATGAGC
AAGACTATCGTGCGTGGCAGCACGCGTTGACCAGAGCCATGGAAATGCGA
ATTGACAACTTTTACAAGTTCGGCCATGTGCTTGGAGAGGGCTCGTTTGC
TACTGTTCGACTGGCGCGTGATATTGTTACCGATCAGCAGTTTGCTGTCA
AAATTGTCCACAAGGACATGTACAAGCCGGAGGAACTGCTGTGGGTTATG
CGCGAGGTCAAGATTATGATGAATGTGCAGCACGCCAATATTGTTGACAC
TTATGATATTTTTGACTCTAGAGATCATCTGCACCTCGTCATCGAATATG
GCACTTTCGAAAGTACTATCGACTCTACGCTCTCTCGTTGCAAGTTTGTT
GGAAATTTCGAACAGCTCGAAACTCCAACACCTCAGCATCATGAACGGTC
CAATATGTGGTCGTCAATGAAATTCAGACACTCTTACCTCACTCTTTCTC
AATGCCGTTGGGAGATGTGCCAAACTGTTTCATTCTCATTCCCAATGCTC
GCCGTGAAGAAGCTTTAG
back to top

protein sequence of Gchil2024.t1

>Gchil2024.t1 ID=Gchil2024.t1|Name=Gchil2024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=256bp
MATLRHGPPVFRSGWLKKEGTDGKHWDRFMRLSGTALSNSHSDVEQPSWS
ISLLENPVTIGPRPLEIQIQLRRRTLSYFVSDEQDYRAWQHALTRAMEMR
IDNFYKFGHVLGEGSFATVRLARDIVTDQQFAVKIVHKDMYKPEELLWVM
REVKIMMNVQHANIVDTYDIFDSRDHLHLVIEYGTFESTIDSTLSRCKFV
GNFEQLETPTPQHHERSNMWSSMKFRHSYLTLSQCRWEMCQTVSFSFPML
AVKKL*
back to top

mRNA from alignment at tig00004439_pilon:1766002..1767651-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2024.t1 ID=Gchil2024.t1|Name=Gchil2024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1650bp|location=Sequence derived from alignment at tig00004439_pilon:1766002..1767651- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACGCTTCGCCATGGCCCGCCCGTCTTTCGCTCCGGCTGGCTGAA
GAAAGAGGGCACCGACGGAAAGCACTGGGACCGCTTCATGCGCCTCAGCG
GCACCGCCCTGTCCAACAGTCACTCCGACGTCGAGCAGCCGTCCTGGTCC
ATCAGCCTACTTGAGAACCCCGTCACCATCGGCCCGCGCCCTCTTGAGAT
TCAGATCCAGCTGCGTCGCCGCACCCTCAGCTACTTTGTCAGCGATGAGC
AAGACTATCGTGCGTGGCAGCACGCGTTGACCAGAGCCATGGAAATGCGA
ATTGACAACTTTTACAAGTTCGGCCATGTGCTTGGAGAGGGCTCGTTTGC
TACTGTTCGACTGGCGCGTGATATTGTTACCGATCAGCAGTTTGCTGTCA
AAATTGTCCACAAGGACATGTACAAGCCGGAGGAACTGCTGTGGGTTATG
CGCGAGGTCAAGATTATGATGAATGTGCAGCACGCCAATATTGTTGACAC
TTATGATATTTTTGACTCTAGAGATCATCTGCACCTCGTCATCGAGTACA
TGGCGGGTGGAGAACTTTTCGACATCATTGCCGACCATGGTCATTTGTCG
GAGCAGAATGCTTCCATTGTTATGCGCGATATCATCAAGGGCATTGAATA
CTTGCATGATGTGGGTGTGGTGCACTGCGACGTCAAACCTGAAAACATTC
TCTGCAAGAGCAACCAGTGGCCGTACAACGTCAAGCTCTGCGACTTTGGT
CTGGCCAACTTCTTTGACAAGCAAAACAACAACTCCATGACTGAGACCAT
TGGAACCCCAGGTTACGTCGCCCCGGAAGTCGTTCGACGCGAGCCCTATG
GCCCACCCGTCGACATGTGGGCATGCGGTGTCGTGTTGTATGTCATGCTT
AGTGGAAGAATGCCCTTCTATGGCAGCAATGACATCCAATGCTTGCGTCG
AACTGCCAACGGCGAGTACTCTTTTCCGGAGCGCGAATGGAAATTTGTCA
GCGAGGATGCCAAGTCCTTAGTCCGCTCCCTCTTGCAAATTCGTCCTGAG
CTGCGCTTAACGGCCAAAGCTGCCCTCCAACACCGATGGCTGGCGCAACC
AGAAAATCTCAACACCGTACCGCTGCAGAATGATCTCAGCCAGATTCACT
CGAGAGTAAGAAGAAAATTCAGAAAGGCCGTCACAATTGCCAGAACTATC
GAGAAGATGAAAGACTTGATTTCAGGTTTGCCGCGCAGTGTGAGCACAAG
TTCTGATAATTCCAGTTCGCCACCCCCTAATACTTGAACCCCTGCTGTCA
AGATATGGCACTTTCGAAAGTACTATCGACTCTACGCTCTCTCGTTGCAA
GTTTGTTGGAAATTTCGAACAGCTCGAAACTCCAACACCTCAGGTATGTG
GCCGAGCGCCATGTATGTGTTGGTGACGCTCGAACGATTGAACACTTTCT
TAATATGTTTTCTATTTTTTCGCACGTGACAACGCCGATATGATGCCGGA
GCTCGTACCTGCGTGAAGCATCATGAACGGTCCAATATGTGGTCGTCAAT
GAAATTCAGACACTCTTACCTCACTCTTTCTCAATGCCGTTGGGAGATGT
GCCAAACTGTTTCATTCTCATTCCCAATGCTCGCCGTGAAGAAGCTTTAG
back to top

Coding sequence (CDS) from alignment at tig00004439_pilon:1766002..1767651-

>Gchil2024.t1 ID=Gchil2024.t1|Name=Gchil2024.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=768bp|location=Sequence derived from alignment at tig00004439_pilon:1766002..1767651- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACGCTTCGCCATGGCCCGCCCGTCTTTCGCTCCGGCTGGCTGAA
GAAAGAGGGCACCGACGGAAAGCACTGGGACCGCTTCATGCGCCTCAGCG
GCACCGCCCTGTCCAACAGTCACTCCGACGTCGAGCAGCCGTCCTGGTCC
ATCAGCCTACTTGAGAACCCCGTCACCATCGGCCCGCGCCCTCTTGAGAT
TCAGATCCAGCTGCGTCGCCGCACCCTCAGCTACTTTGTCAGCGATGAGC
AAGACTATCGTGCGTGGCAGCACGCGTTGACCAGAGCCATGGAAATGCGA
ATTGACAACTTTTACAAGTTCGGCCATGTGCTTGGAGAGGGCTCGTTTGC
TACTGTTCGACTGGCGCGTGATATTGTTACCGATCAGCAGTTTGCTGTCA
AAATTGTCCACAAGGACATGTACAAGCCGGAGGAACTGCTGTGGGTTATG
CGCGAGGTCAAGATTATGATGAATGTGCAGCACGCCAATATTGTTGACAC
TTATGATATTTTTGACTCTAGAGATCATCTGCACCTCGTCATCGAATATG
GCACTTTCGAAAGTACTATCGACTCTACGCTCTCTCGTTGCAAGTTTGTT
GGAAATTTCGAACAGCTCGAAACTCCAACACCTCAGCATCATGAACGGTC
CAATATGTGGTCGTCAATGAAATTCAGACACTCTTACCTCACTCTTTCTC
AATGCCGTTGGGAGATGTGCCAAACTGTTTCATTCTCATTCCCAATGCTC
GCCGTGAAGAAGCTTTAG
back to top