Gchil2020.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2020.t1
Unique NameGchil2020.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1756261..1757448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2020Gchil2020Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1756261..1757448 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2020.t1.start1Gchil2020.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1756261..1756263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2020.t1.CDS1Gchil2020.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1756261..1757448 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2020.t1.exon1Gchil2020.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1756261..1757448 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2020.t1.stop1Gchil2020.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1757446..1757448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2020.t1Gchil2020.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1756261..1757448 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2020.t1 ID=Gchil2020.t1|Name=Gchil2020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp
MKHSSCFIALFTCQSEKRVPPTFPLLSNPSNRANVFLLSPTKAVAALHSI
PPNFEQPLRIGNGIADVISTCVDADLALLELDKPLLENFSISFTSPSARS
FCYALSPALHRLQLRFLRIECAVIVYCASRLPVFVFSASHAVLPGWSGSP
VITAQDGLVGVLVQSKGNIVHVVPSRFVQLLQRSQQPLVLGYIPALHIQH
GPSSSRRLIAKQSLGELRKGDVIIQIGGKDVHRGFVNWQGLRAPPEAAVV
ELFGTKVQLKVLRKKELQIASVFVCRATDGCAAIGRHNGICVFAGPYKFS
ALSIEMLESFGARWQKKAPIALVDAATKEWDGHVVVVVTRTPDSQRNLLF
QRVKLLDGKIVRSVEQLVNGDIITFESGEYMKLPFSAVRRCDNPL*
back to top

spliced messenger RNA

>Gchil2020.t1 ID=Gchil2020.t1|Name=Gchil2020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00004439_pilon:1756261..1757448+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCACTCTTCATGCTTTATTGCGTTATTCACTTGCCAGAGTGAAAA
GAGAGTGCCACCGACATTTCCCCTTCTTTCGAACCCTTCAAACAGAGCCA
ATGTGTTTTTGCTTTCCCCTACCAAAGCTGTTGCCGCCTTACACTCCATT
CCGCCGAATTTTGAGCAACCATTGCGCATAGGGAATGGGATCGCGGATGT
GATATCTACTTGTGTAGATGCAGATCTTGCTCTACTCGAGCTCGACAAAC
CTCTTCTTGAAAACTTCTCAATTTCTTTCACTTCTCCCAGTGCAAGAAGC
TTTTGTTATGCTCTGTCGCCAGCACTTCACCGATTGCAATTGAGATTTCT
GCGCATTGAATGTGCCGTCATCGTATACTGCGCATCCAGGCTTCCAGTGT
TTGTATTTTCTGCATCACATGCCGTGCTTCCAGGTTGGTCTGGTTCGCCT
GTCATAACCGCGCAAGACGGACTTGTTGGCGTTTTGGTGCAATCTAAAGG
AAACATTGTACATGTTGTTCCTTCGCGTTTTGTCCAACTTCTTCAGCGGT
CTCAACAACCACTTGTTCTGGGATATATTCCTGCATTACACATTCAGCAT
GGGCCTTCATCGTCACGAAGACTTATCGCTAAGCAAAGTTTAGGTGAATT
AAGAAAAGGGGATGTTATCATCCAAATTGGAGGCAAAGACGTCCATCGAG
GCTTTGTTAACTGGCAGGGCTTGCGGGCTCCACCAGAAGCTGCAGTGGTT
GAACTGTTCGGGACAAAAGTGCAACTCAAGGTTCTACGTAAGAAAGAGTT
GCAAATTGCCTCCGTTTTCGTGTGCCGTGCCACAGACGGTTGTGCCGCCA
TAGGGAGGCATAATGGAATTTGTGTTTTCGCCGGTCCGTACAAGTTTTCT
GCACTTTCCATTGAAATGTTGGAATCGTTCGGAGCCCGGTGGCAAAAGAA
AGCACCTATTGCTCTTGTTGACGCAGCTACAAAGGAATGGGATGGGCATG
TAGTTGTGGTGGTAACTAGAACCCCCGACTCGCAGCGTAATCTACTGTTT
CAAAGAGTGAAATTGTTGGATGGAAAAATAGTGAGATCGGTTGAACAACT
TGTCAATGGTGATATAATCACATTCGAGAGTGGAGAATATATGAAGCTTC
CATTTAGTGCTGTTAGAAGATGTGATAATCCGCTGTAG
back to top

protein sequence of Gchil2020.t1

>Gchil2020.t1 ID=Gchil2020.t1|Name=Gchil2020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=396bp
MKHSSCFIALFTCQSEKRVPPTFPLLSNPSNRANVFLLSPTKAVAALHSI
PPNFEQPLRIGNGIADVISTCVDADLALLELDKPLLENFSISFTSPSARS
FCYALSPALHRLQLRFLRIECAVIVYCASRLPVFVFSASHAVLPGWSGSP
VITAQDGLVGVLVQSKGNIVHVVPSRFVQLLQRSQQPLVLGYIPALHIQH
GPSSSRRLIAKQSLGELRKGDVIIQIGGKDVHRGFVNWQGLRAPPEAAVV
ELFGTKVQLKVLRKKELQIASVFVCRATDGCAAIGRHNGICVFAGPYKFS
ALSIEMLESFGARWQKKAPIALVDAATKEWDGHVVVVVTRTPDSQRNLLF
QRVKLLDGKIVRSVEQLVNGDIITFESGEYMKLPFSAVRRCDNPL*
back to top

mRNA from alignment at tig00004439_pilon:1756261..1757448+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2020.t1 ID=Gchil2020.t1|Name=Gchil2020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00004439_pilon:1756261..1757448+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCACTCTTCATGCTTTATTGCGTTATTCACTTGCCAGAGTGAAAA
GAGAGTGCCACCGACATTTCCCCTTCTTTCGAACCCTTCAAACAGAGCCA
ATGTGTTTTTGCTTTCCCCTACCAAAGCTGTTGCCGCCTTACACTCCATT
CCGCCGAATTTTGAGCAACCATTGCGCATAGGGAATGGGATCGCGGATGT
GATATCTACTTGTGTAGATGCAGATCTTGCTCTACTCGAGCTCGACAAAC
CTCTTCTTGAAAACTTCTCAATTTCTTTCACTTCTCCCAGTGCAAGAAGC
TTTTGTTATGCTCTGTCGCCAGCACTTCACCGATTGCAATTGAGATTTCT
GCGCATTGAATGTGCCGTCATCGTATACTGCGCATCCAGGCTTCCAGTGT
TTGTATTTTCTGCATCACATGCCGTGCTTCCAGGTTGGTCTGGTTCGCCT
GTCATAACCGCGCAAGACGGACTTGTTGGCGTTTTGGTGCAATCTAAAGG
AAACATTGTACATGTTGTTCCTTCGCGTTTTGTCCAACTTCTTCAGCGGT
CTCAACAACCACTTGTTCTGGGATATATTCCTGCATTACACATTCAGCAT
GGGCCTTCATCGTCACGAAGACTTATCGCTAAGCAAAGTTTAGGTGAATT
AAGAAAAGGGGATGTTATCATCCAAATTGGAGGCAAAGACGTCCATCGAG
GCTTTGTTAACTGGCAGGGCTTGCGGGCTCCACCAGAAGCTGCAGTGGTT
GAACTGTTCGGGACAAAAGTGCAACTCAAGGTTCTACGTAAGAAAGAGTT
GCAAATTGCCTCCGTTTTCGTGTGCCGTGCCACAGACGGTTGTGCCGCCA
TAGGGAGGCATAATGGAATTTGTGTTTTCGCCGGTCCGTACAAGTTTTCT
GCACTTTCCATTGAAATGTTGGAATCGTTCGGAGCCCGGTGGCAAAAGAA
AGCACCTATTGCTCTTGTTGACGCAGCTACAAAGGAATGGGATGGGCATG
TAGTTGTGGTGGTAACTAGAACCCCCGACTCGCAGCGTAATCTACTGTTT
CAAAGAGTGAAATTGTTGGATGGAAAAATAGTGAGATCGGTTGAACAACT
TGTCAATGGTGATATAATCACATTCGAGAGTGGAGAATATATGAAGCTTC
CATTTAGTGCTGTTAGAAGATGTGATAATCCGCTGTAG
back to top

Coding sequence (CDS) from alignment at tig00004439_pilon:1756261..1757448+

>Gchil2020.t1 ID=Gchil2020.t1|Name=Gchil2020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1188bp|location=Sequence derived from alignment at tig00004439_pilon:1756261..1757448+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCACTCTTCATGCTTTATTGCGTTATTCACTTGCCAGAGTGAAAA
GAGAGTGCCACCGACATTTCCCCTTCTTTCGAACCCTTCAAACAGAGCCA
ATGTGTTTTTGCTTTCCCCTACCAAAGCTGTTGCCGCCTTACACTCCATT
CCGCCGAATTTTGAGCAACCATTGCGCATAGGGAATGGGATCGCGGATGT
GATATCTACTTGTGTAGATGCAGATCTTGCTCTACTCGAGCTCGACAAAC
CTCTTCTTGAAAACTTCTCAATTTCTTTCACTTCTCCCAGTGCAAGAAGC
TTTTGTTATGCTCTGTCGCCAGCACTTCACCGATTGCAATTGAGATTTCT
GCGCATTGAATGTGCCGTCATCGTATACTGCGCATCCAGGCTTCCAGTGT
TTGTATTTTCTGCATCACATGCCGTGCTTCCAGGTTGGTCTGGTTCGCCT
GTCATAACCGCGCAAGACGGACTTGTTGGCGTTTTGGTGCAATCTAAAGG
AAACATTGTACATGTTGTTCCTTCGCGTTTTGTCCAACTTCTTCAGCGGT
CTCAACAACCACTTGTTCTGGGATATATTCCTGCATTACACATTCAGCAT
GGGCCTTCATCGTCACGAAGACTTATCGCTAAGCAAAGTTTAGGTGAATT
AAGAAAAGGGGATGTTATCATCCAAATTGGAGGCAAAGACGTCCATCGAG
GCTTTGTTAACTGGCAGGGCTTGCGGGCTCCACCAGAAGCTGCAGTGGTT
GAACTGTTCGGGACAAAAGTGCAACTCAAGGTTCTACGTAAGAAAGAGTT
GCAAATTGCCTCCGTTTTCGTGTGCCGTGCCACAGACGGTTGTGCCGCCA
TAGGGAGGCATAATGGAATTTGTGTTTTCGCCGGTCCGTACAAGTTTTCT
GCACTTTCCATTGAAATGTTGGAATCGTTCGGAGCCCGGTGGCAAAAGAA
AGCACCTATTGCTCTTGTTGACGCAGCTACAAAGGAATGGGATGGGCATG
TAGTTGTGGTGGTAACTAGAACCCCCGACTCGCAGCGTAATCTACTGTTT
CAAAGAGTGAAATTGTTGGATGGAAAAATAGTGAGATCGGTTGAACAACT
TGTCAATGGTGATATAATCACATTCGAGAGTGGAGAATATATGAAGCTTC
CATTTAGTGCTGTTAGAAGATGTGATAATCCGCTGTAG
back to top