Gchil2017.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2017.t1
Unique NameGchil2017.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1719236..1720150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2017Gchil2017Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1719236..1720150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2017.t1Gchil2017.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1719236..1720150 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2017.t1.start1Gchil2017.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1719236..1719238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2017.t1.CDS1Gchil2017.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1719236..1719578 +
Gchil2017.t1.CDS2Gchil2017.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1719831..1720150 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2017.t1.exon1Gchil2017.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1719236..1719578 +
Gchil2017.t1.exon2Gchil2017.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1719831..1720150 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2017.t1.intron1Gchil2017.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1719579..1719830 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2017.t1.stop1Gchil2017.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1720148..1720150 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2017.t1 ID=Gchil2017.t1|Name=Gchil2017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=221bp
MRTTENHPRANVEEEMPAPMEVEEDEITPAPVPSAESELQQVITFAIHSE
EQQSLQELDSTVMLFAGRPDRGLYRVYYAWDSDAAQAWIDPATSANIPEF
ETLSTVGTRRCRRCAFMDMSYVTGCGPSFLRLEGTAALAFEAHRQSSTRY
SFLWGAGPPSLDPAHYTLANLRAFIQDINVKHMVPRLYEVIQPKPDVVRE
RYRAMLTTEQMQAGTRKKYG*
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spliced messenger RNA

>Gchil2017.t1 ID=Gchil2017.t1|Name=Gchil2017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00004439_pilon:1719236..1720150+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgagaaccactgaaaaccatcctagggctaatgtcgaagaagagatgcc
tgctccgatggaagttgaagaagatgaaatcactccagctcccgtaccat
ccgctgagtcagagcttcagcaggttattacttttgctattcattcagaa
gaacagcaatcgctccaagagcttgattcgaccgtcatgctgtttgccgg
acgtccagatcgtggattgtatcgcgtttactacgcatgggattccgatg
ctgctcaagcatggattgatccagccactagtgcaaacattcctgagttt
gagacgttgtccaccgtaggaacccgcagatgcagaagatgcgcgtttat
ggacatgtcctatgtcacaggatgtggcccttcgtttctcagactagaag
gaactgcagcactcgctttcgaggcacacagacagagcagcacgcggtat
agttttctttggggcgcagggcctccttctctggatcctgctcactatac
actagcaaacctgcgagcgtttatccaagacatcaacgtgaaacacatgg
ttccgagactttacgaggtgattcagcccaaacctgatgtggttcgagag
cggtatcgagcgatgctgacaacggagcaaatgcaggcaggcacaagaaa
aaaatacggttga
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protein sequence of Gchil2017.t1

>Gchil2017.t1 ID=Gchil2017.t1|Name=Gchil2017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=221bp
MRTTENHPRANVEEEMPAPMEVEEDEITPAPVPSAESELQQVITFAIHSE
EQQSLQELDSTVMLFAGRPDRGLYRVYYAWDSDAAQAWIDPATSANIPEF
ETLSTVGTRRCRRCAFMDMSYVTGCGPSFLRLEGTAALAFEAHRQSSTRY
SFLWGAGPPSLDPAHYTLANLRAFIQDINVKHMVPRLYEVIQPKPDVVRE
RYRAMLTTEQMQAGTRKKYG*
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mRNA from alignment at tig00004439_pilon:1719236..1720150+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2017.t1 ID=Gchil2017.t1|Name=Gchil2017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00004439_pilon:1719236..1720150+ (Gracilaria chilensis NLEC103_M9 male)
atgagaaccactgaaaaccatcctagggctaatgtcgaagaagagatgcc
tgctccgatggaagttgaagaagatgaaatcactccagctcccgtaccat
ccgctgagtcagagcttcagcaggttattacttttgctattcattcagaa
gaacagcaatcgctccaagagcttgattcgaccgtcatgctgtttgccgg
acgtccagatcgtggattgtatcgcgtttactacgcatgggattccgatg
ctgctcaagcatggattgatccagccactagtgcaaacattcctgagttt
gagacgttgtccaccgtaggaacccgcagatgcagaagatgcggtgagtt
ttcacacacctatggttcgtgtccgtacgaagattggacgttacgaattc
atagctgcaagtggtgtgggtgtgtgcttttaggaaaagaggtacatgga
gtctgttgtggcatgaaacgaaattcaggatggggggtcacatttcgtag
acgccatactaatgaagaaatacgaagcatataccgttcaagagcattcc
actcgaactccttaaacttgaatacggtttttgccaccactcaagcgttt
atggacatgtcctatgtcacaggatgtggcccttcgtttctcagactaga
aggaactgcagcactcgctttcgaggcacacagacagagcagcacgcggt
atagttttctttggggcgcagggcctccttctctggatcctgctcactat
acactagcaaacctgcgagcgtttatccaagacatcaacgtgaaacacat
ggttccgagactttacgaggtgattcagcccaaacctgatgtggttcgag
agcggtatcgagcgatgctgacaacggagcaaatgcaggcaggcacaaga
aaaaaatacggttga
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Coding sequence (CDS) from alignment at tig00004439_pilon:1719236..1720150+

>Gchil2017.t1 ID=Gchil2017.t1|Name=Gchil2017.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=663bp|location=Sequence derived from alignment at tig00004439_pilon:1719236..1720150+ (Gracilaria chilensis NLEC103_M9 male)
atgagaaccactgaaaaccatcctagggctaatgtcgaagaagagatgcc
tgctccgatggaagttgaagaagatgaaatcactccagctcccgtaccat
ccgctgagtcagagcttcagcaggttattacttttgctattcattcagaa
gaacagcaatcgctccaagagcttgattcgaccgtcatgctgtttgccgg
acgtccagatcgtggattgtatcgcgtttactacgcatgggattccgatg
ctgctcaagcatggattgatccagccactagtgcaaacattcctgagttt
gagacgttgtccaccgtaggaacccgcagatgcagaagatgcgcgtttat
ggacatgtcctatgtcacaggatgtggcccttcgtttctcagactagaag
gaactgcagcactcgctttcgaggcacacagacagagcagcacgcggtat
agttttctttggggcgcagggcctccttctctggatcctgctcactatac
actagcaaacctgcgagcgtttatccaagacatcaacgtgaaacacatgg
ttccgagactttacgaggtgattcagcccaaacctgatgtggttcgagag
cggtatcgagcgatgctgacaacggagcaaatgcaggcaggcacaagaaa
aaaatacggttga
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