Gchil2011.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2011.t1
Unique NameGchil2011.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length74
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1703979..1704284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2011Gchil2011Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1703979..1704284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2011.t1Gchil2011.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1703979..1704284 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2011.t1.start1Gchil2011.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1703979..1703981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2011.t1.CDS1Gchil2011.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1703979..1704090 +
Gchil2011.t1.CDS2Gchil2011.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1704175..1704284 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2011.t1.exon1Gchil2011.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1703979..1704090 +
Gchil2011.t1.exon2Gchil2011.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1704175..1704284 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2011.t1.intron1Gchil2011.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1704091..1704174 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2011.t1.stop1Gchil2011.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1704282..1704284 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2011.t1 ID=Gchil2011.t1|Name=Gchil2011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=74bp
MYAHLTGGKKNLEEIARDAGVNVTRVSSSTFDLEKLVSHVADDNCVDKRG
VSRGKKAKDQEPTEEPDCKEQQG*
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spliced messenger RNA

>Gchil2011.t1 ID=Gchil2011.t1|Name=Gchil2011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=222bp|location=Sequence derived from alignment at tig00004439_pilon:1703979..1704284+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGCTCATCTAACCGGGGGGAAGAAAAACCTTGAAGAAATTGCCAG
AGACGCGGGGGTGAATGTCACTCGAGTCAGTTCTTCTACATTCGATTTAG
AAAAACTTGTTTCCCATGTAGCTGATGACAACTGTGTAGATAAACGAGGA
GTTTCTCGCGGGAAAAAAGCTAAGGATCAAGAGCCAACAGAAGAACCAGA
TTGCAAAGAACAACAAGGTTGA
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protein sequence of Gchil2011.t1

>Gchil2011.t1 ID=Gchil2011.t1|Name=Gchil2011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=74bp
MYAHLTGGKKNLEEIARDAGVNVTRVSSSTFDLEKLVSHVADDNCVDKRG
VSRGKKAKDQEPTEEPDCKEQQG*
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mRNA from alignment at tig00004439_pilon:1703979..1704284+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2011.t1 ID=Gchil2011.t1|Name=Gchil2011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=306bp|location=Sequence derived from alignment at tig00004439_pilon:1703979..1704284+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATGCTCATCTAACCGGGGGGAAGAAAAACCTTGAAGAAATTGCCAG
AGACGCGGGGGTGAATGTCACTCGAGTCAGTTCTTCTACATTCGATTTAG
AAAAACTTGTTTGTAAGTTGGATTCAAAAATTAATTTGTGACTGCTATAT
TCGTTGAAGCATCTAACGCAAATGTTTCTTCTTCCGCGTGGTGTAGCCCA
TGTAGCTGATGACAACTGTGTAGATAAACGAGGAGTTTCTCGCGGGAAAA
AAGCTAAGGATCAAGAGCCAACAGAAGAACCAGATTGCAAAGAACAACAA
GGTTGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1703979..1704284+

>Gchil2011.t1 ID=Gchil2011.t1|Name=Gchil2011.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=222bp|location=Sequence derived from alignment at tig00004439_pilon:1703979..1704284+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATGCTCATCTAACCGGGGGGAAGAAAAACCTTGAAGAAATTGCCAG
AGACGCGGGGGTGAATGTCACTCGAGTCAGTTCTTCTACATTCGATTTAG
AAAAACTTGTTTCCCATGTAGCTGATGACAACTGTGTAGATAAACGAGGA
GTTTCTCGCGGGAAAAAAGCTAAGGATCAAGAGCCAACAGAAGAACCAGA
TTGCAAAGAACAACAAGGTTGA
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