Gchil2010.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2010.t1
Unique NameGchil2010.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length816
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1699837..1702284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008616131.1
PFAMsLipase_3
Max annot lvl2759|Eukaryota
Evalue2.13e-38
EggNOG OGsKOG4569@1|root,KOG4569@2759|Eukaryota
Descriptionphospholipase A1 activity
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2010Gchil2010Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1699837..1702284 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2010.t1.stop1Gchil2010.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1699837..1699839 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2010.t1.CDS1Gchil2010.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1699837..1702284 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2010.t1.exon1Gchil2010.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1699837..1702284 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2010.t1.start1Gchil2010.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1702282..1702284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2010.t1Gchil2010.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1699837..1702284 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2010.t1 ID=Gchil2010.t1|Name=Gchil2010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=816bp
MNDSDGDHRFDDATVSFSSDDMLSLAPTGQEIAVPLVPQFKTFKKLEVID
SKRIDFMTRAYNIAAFIAFLFSATVIIMARTAFSMSFKGIPDQFPDLTVY
TFPKAFVLIDSLLFFMLFTYSLALLTVFAFVLVKQGKARLLNEQVWVFFL
LVSTVVYLIPFEASIRLRRDFFELPVPEAGNDFTIIDVFLCLRYCSFSFI
YILYLWLGAHGYRYLNRTLSFTHWKFYAPKSLLIFAYVGYKLGVLFTYRI
TFSEMPFASFVGFLNLYGAVKEWPTLGVVTIAVLTVFELVIALWISIDII
HTFRVLRKAPYVDYRTKILGYRFFLHQQIVFNVVYITTFVLILFGLPNGA
QILQFSINLKKHAGRGSYFDVLYAPFGLNLCILAFATVEAYTNLPAEINL
KGSLLGCQYKSLNREKVHCEPVVYRNTEPHSFSRAGLDLRPNCFVMQTTV
QLFNLSWFVYYHGTEKENKLGLERNSLPVKIKDFMYDKTTDTKAIVAESS
DRITVAFKGTSSTQNLRTDIKFLHRSLAHVLDIEDVSEFEQQHSMPPTWF
KYARRAKVHAGFADAYQSIKGNLRQILSSLAREEERLVLFTGHSLGGALA
TLCSIDALITLGIPSRRIAVSTFGSPRVGNEAFQEIYDAEILMHWRIVAG
GDIISRLPKLGYRHVGKKVILTSTGELFIDPSALEMIFWHSQTASIVHHR
KACYLLAIDAWCKSLGTDYKPDFWPFPVSENDSRKFVTTFQKPNSQRRNY
ASLSRTYLGTRTVDRAKRMQVFADAIDGLRSNDQELKEANEDIVIKWAKL
AQAVLYQNASAHFTV*
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spliced messenger RNA

>Gchil2010.t1 ID=Gchil2010.t1|Name=Gchil2010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2448bp|location=Sequence derived from alignment at tig00004439_pilon:1699837..1702284- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGATTCTGATGGAGACCATCGATTCGATGACGCAACAGTCAGTTT
CTCTTCAGATGATATGCTTTCGCTTGCTCCCACTGGGCAAGAAATTGCCG
TTCCTCTGGTACCACAATTTAAAACATTTAAAAAGCTTGAGGTTATCGAT
TCCAAACGCATAGACTTTATGACGAGAGCATACAACATAGCCGCATTCAT
CGCCTTTTTGTTTTCTGCAACTGTGATAATCATGGCTAGAACCGCGTTCT
CTATGTCTTTCAAGGGTATTCCCGATCAGTTTCCAGACCTGACCGTCTAC
ACGTTCCCGAAAGCATTCGTTTTAATTGACAGCCTACTATTTTTCATGTT
GTTCACCTACTCTCTTGCATTACTCACTGTGTTTGCTTTTGTTCTTGTAA
AACAGGGGAAGGCTCGCCTTCTGAACGAACAAGTATGGGTTTTCTTTCTC
CTTGTATCAACTGTCGTATATCTCATTCCTTTCGAGGCAAGTATCCGTTT
GAGAAGGGACTTTTTCGAGCTGCCTGTCCCTGAAGCTGGGAATGATTTCA
CAATCATTGATGTGTTTTTATGCCTACGATACTGTTCGTTTTCATTCATC
TACATCCTCTATCTATGGCTGGGTGCTCACGGTTATCGATATTTGAACCG
GACACTTTCTTTCACACATTGGAAATTCTATGCGCCAAAGTCCCTTCTTA
TTTTTGCTTATGTCGGGTACAAGCTCGGAGTTCTTTTCACCTATCGCATC
ACTTTCTCGGAAATGCCTTTCGCTTCTTTTGTCGGATTTCTCAATTTGTA
TGGTGCCGTTAAGGAATGGCCGACGCTAGGGGTTGTAACAATTGCTGTCC
TAACTGTCTTTGAACTAGTAATTGCGCTTTGGATTAGTATTGATATAATC
CATACCTTTAGAGTGCTCCGAAAAGCTCCATATGTCGATTATCGAACGAA
GATCTTAGGTTACCGTTTCTTTTTGCACCAACAAATCGTGTTCAACGTCG
TATACATCACAACCTTTGTGCTAATTCTTTTTGGCCTTCCGAATGGTGCT
CAGATTCTACAATTCTCGATAAACTTGAAGAAACATGCAGGGCGTGGATC
ATATTTCGACGTTCTCTACGCGCCTTTTGGGCTCAACCTGTGTATCCTAG
CCTTCGCTACAGTTGAGGCGTACACCAACCTGCCTGCGGAAATAAATTTG
AAAGGCAGTCTTCTTGGTTGCCAATACAAATCTCTGAACCGTGAGAAGGT
GCACTGTGAGCCTGTCGTGTACCGTAACACCGAACCACATTCGTTCTCAA
GAGCTGGTTTGGATTTGCGACCTAATTGCTTTGTAATGCAGACCACTGTT
CAACTATTCAACTTGTCCTGGTTTGTTTACTACCATGGCACTGAGAAGGA
AAACAAATTGGGATTGGAGAGAAATAGTCTACCGGTTAAGATAAAGGATT
TTATGTACGATAAGACCACGGACACAAAAGCTATTGTTGCCGAATCTTCT
GATAGGATTACCGTTGCGTTTAAGGGAACCTCAAGCACCCAAAACTTGCG
TACAGATATCAAATTTCTACACAGATCTCTTGCCCATGTTTTGGATATCG
AAGATGTTTCCGAGTTTGAACAGCAGCATTCGATGCCACCAACGTGGTTC
AAATATGCACGAAGAGCCAAAGTTCACGCTGGGTTTGCCGACGCATACCA
GTCCATTAAAGGTAATCTCCGTCAAATACTGTCATCTCTGGCAAGAGAAG
AAGAACGCTTGGTGCTATTCACTGGCCACAGCCTCGGGGGAGCACTGGCA
ACCTTATGCAGCATAGATGCTTTGATTACCTTGGGTATTCCAAGCAGGAG
GATAGCAGTGTCCACTTTCGGATCTCCACGGGTTGGCAACGAAGCATTTC
AAGAGATTTATGACGCTGAAATTCTGATGCATTGGCGTATTGTTGCAGGA
GGTGACATAATATCTCGTCTTCCAAAGTTGGGCTACAGACATGTTGGAAA
GAAGGTTATACTTACCTCTACTGGGGAACTTTTTATCGATCCTAGTGCGT
TAGAGATGATATTCTGGCATTCGCAGACTGCCTCAATCGTACATCACCGA
AAAGCTTGCTACCTGCTGGCTATCGATGCCTGGTGTAAGAGCTTGGGAAC
TGATTACAAGCCAGACTTTTGGCCGTTTCCAGTTTCAGAAAACGACAGCC
GAAAATTTGTGACGACGTTTCAGAAACCTAACAGCCAGAGACGGAACTAC
GCTTCACTGTCTAGAACTTATCTAGGAACACGAACTGTGGATCGAGCCAA
GCGCATGCAAGTGTTCGCAGACGCAATTGATGGGTTGAGAAGTAATGATC
AAGAATTGAAGGAGGCAAATGAAGACATTGTGATCAAATGGGCGAAGTTG
GCACAAGCAGTGCTTTACCAAAATGCCTCAGCGCATTTTACGGTGTAG
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protein sequence of Gchil2010.t1

>Gchil2010.t1 ID=Gchil2010.t1|Name=Gchil2010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=816bp
MNDSDGDHRFDDATVSFSSDDMLSLAPTGQEIAVPLVPQFKTFKKLEVID
SKRIDFMTRAYNIAAFIAFLFSATVIIMARTAFSMSFKGIPDQFPDLTVY
TFPKAFVLIDSLLFFMLFTYSLALLTVFAFVLVKQGKARLLNEQVWVFFL
LVSTVVYLIPFEASIRLRRDFFELPVPEAGNDFTIIDVFLCLRYCSFSFI
YILYLWLGAHGYRYLNRTLSFTHWKFYAPKSLLIFAYVGYKLGVLFTYRI
TFSEMPFASFVGFLNLYGAVKEWPTLGVVTIAVLTVFELVIALWISIDII
HTFRVLRKAPYVDYRTKILGYRFFLHQQIVFNVVYITTFVLILFGLPNGA
QILQFSINLKKHAGRGSYFDVLYAPFGLNLCILAFATVEAYTNLPAEINL
KGSLLGCQYKSLNREKVHCEPVVYRNTEPHSFSRAGLDLRPNCFVMQTTV
QLFNLSWFVYYHGTEKENKLGLERNSLPVKIKDFMYDKTTDTKAIVAESS
DRITVAFKGTSSTQNLRTDIKFLHRSLAHVLDIEDVSEFEQQHSMPPTWF
KYARRAKVHAGFADAYQSIKGNLRQILSSLAREEERLVLFTGHSLGGALA
TLCSIDALITLGIPSRRIAVSTFGSPRVGNEAFQEIYDAEILMHWRIVAG
GDIISRLPKLGYRHVGKKVILTSTGELFIDPSALEMIFWHSQTASIVHHR
KACYLLAIDAWCKSLGTDYKPDFWPFPVSENDSRKFVTTFQKPNSQRRNY
ASLSRTYLGTRTVDRAKRMQVFADAIDGLRSNDQELKEANEDIVIKWAKL
AQAVLYQNASAHFTV*
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mRNA from alignment at tig00004439_pilon:1699837..1702284-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2010.t1 ID=Gchil2010.t1|Name=Gchil2010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2448bp|location=Sequence derived from alignment at tig00004439_pilon:1699837..1702284- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGATTCTGATGGAGACCATCGATTCGATGACGCAACAGTCAGTTT
CTCTTCAGATGATATGCTTTCGCTTGCTCCCACTGGGCAAGAAATTGCCG
TTCCTCTGGTACCACAATTTAAAACATTTAAAAAGCTTGAGGTTATCGAT
TCCAAACGCATAGACTTTATGACGAGAGCATACAACATAGCCGCATTCAT
CGCCTTTTTGTTTTCTGCAACTGTGATAATCATGGCTAGAACCGCGTTCT
CTATGTCTTTCAAGGGTATTCCCGATCAGTTTCCAGACCTGACCGTCTAC
ACGTTCCCGAAAGCATTCGTTTTAATTGACAGCCTACTATTTTTCATGTT
GTTCACCTACTCTCTTGCATTACTCACTGTGTTTGCTTTTGTTCTTGTAA
AACAGGGGAAGGCTCGCCTTCTGAACGAACAAGTATGGGTTTTCTTTCTC
CTTGTATCAACTGTCGTATATCTCATTCCTTTCGAGGCAAGTATCCGTTT
GAGAAGGGACTTTTTCGAGCTGCCTGTCCCTGAAGCTGGGAATGATTTCA
CAATCATTGATGTGTTTTTATGCCTACGATACTGTTCGTTTTCATTCATC
TACATCCTCTATCTATGGCTGGGTGCTCACGGTTATCGATATTTGAACCG
GACACTTTCTTTCACACATTGGAAATTCTATGCGCCAAAGTCCCTTCTTA
TTTTTGCTTATGTCGGGTACAAGCTCGGAGTTCTTTTCACCTATCGCATC
ACTTTCTCGGAAATGCCTTTCGCTTCTTTTGTCGGATTTCTCAATTTGTA
TGGTGCCGTTAAGGAATGGCCGACGCTAGGGGTTGTAACAATTGCTGTCC
TAACTGTCTTTGAACTAGTAATTGCGCTTTGGATTAGTATTGATATAATC
CATACCTTTAGAGTGCTCCGAAAAGCTCCATATGTCGATTATCGAACGAA
GATCTTAGGTTACCGTTTCTTTTTGCACCAACAAATCGTGTTCAACGTCG
TATACATCACAACCTTTGTGCTAATTCTTTTTGGCCTTCCGAATGGTGCT
CAGATTCTACAATTCTCGATAAACTTGAAGAAACATGCAGGGCGTGGATC
ATATTTCGACGTTCTCTACGCGCCTTTTGGGCTCAACCTGTGTATCCTAG
CCTTCGCTACAGTTGAGGCGTACACCAACCTGCCTGCGGAAATAAATTTG
AAAGGCAGTCTTCTTGGTTGCCAATACAAATCTCTGAACCGTGAGAAGGT
GCACTGTGAGCCTGTCGTGTACCGTAACACCGAACCACATTCGTTCTCAA
GAGCTGGTTTGGATTTGCGACCTAATTGCTTTGTAATGCAGACCACTGTT
CAACTATTCAACTTGTCCTGGTTTGTTTACTACCATGGCACTGAGAAGGA
AAACAAATTGGGATTGGAGAGAAATAGTCTACCGGTTAAGATAAAGGATT
TTATGTACGATAAGACCACGGACACAAAAGCTATTGTTGCCGAATCTTCT
GATAGGATTACCGTTGCGTTTAAGGGAACCTCAAGCACCCAAAACTTGCG
TACAGATATCAAATTTCTACACAGATCTCTTGCCCATGTTTTGGATATCG
AAGATGTTTCCGAGTTTGAACAGCAGCATTCGATGCCACCAACGTGGTTC
AAATATGCACGAAGAGCCAAAGTTCACGCTGGGTTTGCCGACGCATACCA
GTCCATTAAAGGTAATCTCCGTCAAATACTGTCATCTCTGGCAAGAGAAG
AAGAACGCTTGGTGCTATTCACTGGCCACAGCCTCGGGGGAGCACTGGCA
ACCTTATGCAGCATAGATGCTTTGATTACCTTGGGTATTCCAAGCAGGAG
GATAGCAGTGTCCACTTTCGGATCTCCACGGGTTGGCAACGAAGCATTTC
AAGAGATTTATGACGCTGAAATTCTGATGCATTGGCGTATTGTTGCAGGA
GGTGACATAATATCTCGTCTTCCAAAGTTGGGCTACAGACATGTTGGAAA
GAAGGTTATACTTACCTCTACTGGGGAACTTTTTATCGATCCTAGTGCGT
TAGAGATGATATTCTGGCATTCGCAGACTGCCTCAATCGTACATCACCGA
AAAGCTTGCTACCTGCTGGCTATCGATGCCTGGTGTAAGAGCTTGGGAAC
TGATTACAAGCCAGACTTTTGGCCGTTTCCAGTTTCAGAAAACGACAGCC
GAAAATTTGTGACGACGTTTCAGAAACCTAACAGCCAGAGACGGAACTAC
GCTTCACTGTCTAGAACTTATCTAGGAACACGAACTGTGGATCGAGCCAA
GCGCATGCAAGTGTTCGCAGACGCAATTGATGGGTTGAGAAGTAATGATC
AAGAATTGAAGGAGGCAAATGAAGACATTGTGATCAAATGGGCGAAGTTG
GCACAAGCAGTGCTTTACCAAAATGCCTCAGCGCATTTTACGGTGTAG
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Coding sequence (CDS) from alignment at tig00004439_pilon:1699837..1702284-

>Gchil2010.t1 ID=Gchil2010.t1|Name=Gchil2010.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2448bp|location=Sequence derived from alignment at tig00004439_pilon:1699837..1702284- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGATTCTGATGGAGACCATCGATTCGATGACGCAACAGTCAGTTT
CTCTTCAGATGATATGCTTTCGCTTGCTCCCACTGGGCAAGAAATTGCCG
TTCCTCTGGTACCACAATTTAAAACATTTAAAAAGCTTGAGGTTATCGAT
TCCAAACGCATAGACTTTATGACGAGAGCATACAACATAGCCGCATTCAT
CGCCTTTTTGTTTTCTGCAACTGTGATAATCATGGCTAGAACCGCGTTCT
CTATGTCTTTCAAGGGTATTCCCGATCAGTTTCCAGACCTGACCGTCTAC
ACGTTCCCGAAAGCATTCGTTTTAATTGACAGCCTACTATTTTTCATGTT
GTTCACCTACTCTCTTGCATTACTCACTGTGTTTGCTTTTGTTCTTGTAA
AACAGGGGAAGGCTCGCCTTCTGAACGAACAAGTATGGGTTTTCTTTCTC
CTTGTATCAACTGTCGTATATCTCATTCCTTTCGAGGCAAGTATCCGTTT
GAGAAGGGACTTTTTCGAGCTGCCTGTCCCTGAAGCTGGGAATGATTTCA
CAATCATTGATGTGTTTTTATGCCTACGATACTGTTCGTTTTCATTCATC
TACATCCTCTATCTATGGCTGGGTGCTCACGGTTATCGATATTTGAACCG
GACACTTTCTTTCACACATTGGAAATTCTATGCGCCAAAGTCCCTTCTTA
TTTTTGCTTATGTCGGGTACAAGCTCGGAGTTCTTTTCACCTATCGCATC
ACTTTCTCGGAAATGCCTTTCGCTTCTTTTGTCGGATTTCTCAATTTGTA
TGGTGCCGTTAAGGAATGGCCGACGCTAGGGGTTGTAACAATTGCTGTCC
TAACTGTCTTTGAACTAGTAATTGCGCTTTGGATTAGTATTGATATAATC
CATACCTTTAGAGTGCTCCGAAAAGCTCCATATGTCGATTATCGAACGAA
GATCTTAGGTTACCGTTTCTTTTTGCACCAACAAATCGTGTTCAACGTCG
TATACATCACAACCTTTGTGCTAATTCTTTTTGGCCTTCCGAATGGTGCT
CAGATTCTACAATTCTCGATAAACTTGAAGAAACATGCAGGGCGTGGATC
ATATTTCGACGTTCTCTACGCGCCTTTTGGGCTCAACCTGTGTATCCTAG
CCTTCGCTACAGTTGAGGCGTACACCAACCTGCCTGCGGAAATAAATTTG
AAAGGCAGTCTTCTTGGTTGCCAATACAAATCTCTGAACCGTGAGAAGGT
GCACTGTGAGCCTGTCGTGTACCGTAACACCGAACCACATTCGTTCTCAA
GAGCTGGTTTGGATTTGCGACCTAATTGCTTTGTAATGCAGACCACTGTT
CAACTATTCAACTTGTCCTGGTTTGTTTACTACCATGGCACTGAGAAGGA
AAACAAATTGGGATTGGAGAGAAATAGTCTACCGGTTAAGATAAAGGATT
TTATGTACGATAAGACCACGGACACAAAAGCTATTGTTGCCGAATCTTCT
GATAGGATTACCGTTGCGTTTAAGGGAACCTCAAGCACCCAAAACTTGCG
TACAGATATCAAATTTCTACACAGATCTCTTGCCCATGTTTTGGATATCG
AAGATGTTTCCGAGTTTGAACAGCAGCATTCGATGCCACCAACGTGGTTC
AAATATGCACGAAGAGCCAAAGTTCACGCTGGGTTTGCCGACGCATACCA
GTCCATTAAAGGTAATCTCCGTCAAATACTGTCATCTCTGGCAAGAGAAG
AAGAACGCTTGGTGCTATTCACTGGCCACAGCCTCGGGGGAGCACTGGCA
ACCTTATGCAGCATAGATGCTTTGATTACCTTGGGTATTCCAAGCAGGAG
GATAGCAGTGTCCACTTTCGGATCTCCACGGGTTGGCAACGAAGCATTTC
AAGAGATTTATGACGCTGAAATTCTGATGCATTGGCGTATTGTTGCAGGA
GGTGACATAATATCTCGTCTTCCAAAGTTGGGCTACAGACATGTTGGAAA
GAAGGTTATACTTACCTCTACTGGGGAACTTTTTATCGATCCTAGTGCGT
TAGAGATGATATTCTGGCATTCGCAGACTGCCTCAATCGTACATCACCGA
AAAGCTTGCTACCTGCTGGCTATCGATGCCTGGTGTAAGAGCTTGGGAAC
TGATTACAAGCCAGACTTTTGGCCGTTTCCAGTTTCAGAAAACGACAGCC
GAAAATTTGTGACGACGTTTCAGAAACCTAACAGCCAGAGACGGAACTAC
GCTTCACTGTCTAGAACTTATCTAGGAACACGAACTGTGGATCGAGCCAA
GCGCATGCAAGTGTTCGCAGACGCAATTGATGGGTTGAGAAGTAATGATC
AAGAATTGAAGGAGGCAAATGAAGACATTGTGATCAAATGGGCGAAGTTG
GCACAAGCAGTGCTTTACCAAAATGCCTCAGCGCATTTTACGGTGTAG
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