Gchil2009.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2009.t1
Unique Name	Gchil2009.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	795

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1697301..1699796 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7G3R1
PFAMs	Carbam_trans_C,Carbam_trans_N
Max annot lvl	2759\|Eukaryota
Evalue	5.09e-149
EggNOG OGs	COG2192@1\|root,2RKTV@2759\|Eukaryota
Description	Carbamoyltransferase C-terminus
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2009	Gchil2009	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 1697301..1699796 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2009.t1	Gchil2009.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 1697301..1699796 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2009.t1.start1	Gchil2009.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 1697301..1697303 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2009.t1.CDS1	Gchil2009.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1697301..1698203 +
Gchil2009.t1.CDS2	Gchil2009.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1698315..1699796 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2009.t1.exon1	Gchil2009.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1697301..1698203 +
Gchil2009.t1.exon2	Gchil2009.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1698315..1699796 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2009.t1.intron1	Gchil2009.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00004439_pilon 1698204..1698314 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2009.t1.stop1	Gchil2009.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 1699794..1699796 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:1697301..1699796+
coding sequence from alignment at tig00004439_pilon:1697301..1699796+

mRNA sequence

>Gchil2009.t1 ID=Gchil2009.t1|Name=Gchil2009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=795bp
MIAFLSFTSFPYFYEAKAQRYKRLCAKSVTPLVIGINQYSHDASVALIDA
NSGKLLFAQSKERLTRRKHDGGDVSELVRHAIESIKTDNERALDVASEVR
LVVANNHHFRILPFESRIPFQVSLGYLPSSYQSPWNLIGSPASFLKGNEK
YAPRATKIELSHHLAHASSAVYSCPFTRGVVVVMDGMGDARDDWLVAQTC
SDSSHISELSCSDFVRNDPGFREYPEDVDSRPGVSFREAETAYVFEKSQR
GVQFSRIFKRWTPENAPPELSNHSFEEMDSIGAMYSRVSAIIFKDWNNCG
KVMGLAPYGQNQANPSDKKRYFMNGHLYDGSIDVEPGKRKGLEHLGKDIS
NCDDNTPSGRELRLHFQRIAYHVQRDLEEVVADFISRLMSDTGERNLVLA
GGVALNSSMNGMLSSHPCVEGFYVPPFPGDEGIAIGCANFGHSLISRLRG
QVMRYHPKSILPYLGRKYSQQDIWHAIEYYSPWIQKKRGESAKEAAVALA
QGKVVAWFSGRGEFGPRALGSRSLLADPRDKAMVTHLNKLVKKRESFRPF
APSILAEYASEWFGNCSSESSPFMSLTRPAKMPNLIPAVVHVDGTSRLQT
VIQEQNPEFYALINHFFEITNIPMVLNTSFNTSKEPIVESPIDAINTFLK
TDGIDHLIFPGHILSKRDEFSFSLNCALSSSCSGFRSRQIQNVRGESLQT
TIAVYGRTFQSDGKTFNDLPDEQEVELLDGQQLEILEIVHELGVCTISDV
LREIGHSNPEQSGTSSGFDDEHAVSEIMFRVQDLFKKQLVHCEL*

spliced messenger RNA

>Gchil2009.t1 ID=Gchil2009.t1|Name=Gchil2009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2385bp|location=Sequence derived from alignment at tig00004439_pilon:1697301..1699796+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCGTTTCTCAGTTTCACTTCGTTTCCGTATTTTTATGAAGCTAA
GGCTCAGCGATACAAGCGTCTCTGCGCAAAGAGCGTCACTCCCCTCGTAA
TCGGCATTAATCAGTACTCACATGATGCCTCAGTGGCTTTAATCGACGCC
AATTCAGGCAAGCTCTTGTTTGCTCAAAGCAAAGAGCGCCTAACTCGCCG
TAAACATGACGGTGGAGACGTCTCAGAGCTGGTTCGCCATGCAATCGAGT
CGATAAAAACTGACAACGAAAGGGCATTAGACGTTGCATCCGAAGTACGG
CTAGTCGTTGCAAACAACCACCACTTTCGGATTTTGCCTTTTGAGTCTCG
TATTCCGTTTCAAGTATCATTAGGATATCTTCCTTCATCGTATCAGTCGC
CATGGAACCTCATAGGCTCACCAGCATCATTTCTGAAAGGAAACGAAAAG
TATGCGCCTAGGGCTACCAAGATTGAGCTATCTCATCACCTTGCCCACGC
TTCCTCTGCTGTATACAGTTGTCCTTTCACCCGTGGGGTTGTGGTTGTAA
TGGATGGTATGGGGGACGCAAGAGATGACTGGCTCGTTGCGCAAACATGC
AGCGATTCATCTCACATATCTGAGCTTTCCTGTTCTGATTTTGTGCGAAA
CGATCCAGGTTTCAGAGAATATCCCGAAGATGTGGACAGCCGACCTGGTG
TGTCATTCAGAGAGGCGGAAACGGCTTATGTCTTTGAAAAGAGTCAGAGA
GGTGTACAATTTTCTCGAATATTCAAGCGATGGACCCCAGAAAACGCTCC
TCCTGAACTGTCAAATCACTCCTTTGAAGAAATGGATAGCATCGGGGCAA
TGTACAGTCGTGTATCGGCAATTATATTTAAAGACTGGAACAACTGTGGA
AAGGTAATGGGTTTAGCTCCCTACGGACAAAATCAAGCAAACCCCTCTGA
TAAAAAAAGGTATTTCATGAATGGTCACCTTTATGATGGCAGTATCGATG
TAGAACCTGGAAAAAGAAAAGGGCTAGAGCACCTGGGAAAAGACATTTCC
AACTGCGACGACAACACACCCAGCGGAAGAGAACTTAGACTTCATTTCCA
ACGTATTGCATATCACGTCCAACGTGATTTGGAGGAAGTCGTTGCAGACT
TCATTTCAAGGTTAATGTCCGACACAGGGGAACGTAATCTTGTTCTTGCC
GGTGGCGTTGCACTGAACAGCAGCATGAACGGCATGCTAAGCTCACATCC
ATGCGTGGAAGGATTTTACGTGCCGCCATTCCCAGGAGACGAGGGCATTG
CTATCGGTTGTGCTAATTTTGGTCATTCATTAATTTCTCGTCTGCGTGGC
CAAGTTATGCGATATCACCCGAAGAGTATCTTGCCATATCTGGGTCGAAA
GTATTCCCAACAAGACATTTGGCATGCAATAGAATATTACAGCCCTTGGA
TTCAAAAAAAACGTGGCGAGTCTGCGAAAGAAGCCGCTGTAGCGCTAGCC
CAGGGGAAAGTCGTCGCATGGTTTAGTGGAAGAGGTGAATTTGGCCCAAG
GGCTTTGGGAAGCCGATCACTTCTCGCAGACCCAAGAGACAAAGCAATGG
TTACGCATCTTAATAAGCTTGTGAAGAAACGAGAAAGTTTCCGGCCATTT
GCTCCCTCCATCCTGGCGGAATACGCGTCAGAATGGTTTGGAAACTGCAG
TTCGGAATCTTCACCATTTATGTCGCTGACACGGCCGGCAAAAATGCCAA
ACTTGATACCCGCTGTCGTCCATGTCGATGGAACTTCTCGTTTGCAAACA
GTAATTCAGGAACAAAATCCAGAATTCTATGCACTGATTAATCACTTTTT
CGAAATAACGAACATACCTATGGTTCTTAATACCTCATTCAACACTTCAA
AAGAACCAATCGTTGAGTCACCAATTGATGCCATCAATACTTTCCTCAAA
ACCGACGGCATCGATCACCTCATTTTTCCAGGCCATATTTTGTCAAAGAG
AGACGAGTTTTCATTCTCACTAAACTGTGCACTATCATCTTCATGCTCTG
GCTTCAGGTCGAGGCAGATTCAAAATGTCCGTGGCGAAAGCTTACAAACA
ACCATCGCTGTCTACGGGAGAACATTTCAGAGCGATGGCAAAACCTTCAA
TGACCTTCCAGATGAACAAGAAGTGGAATTACTTGACGGCCAACAGCTCG
AAATATTAGAAATCGTTCACGAGCTCGGTGTATGCACCATATCTGATGTT
CTACGCGAAATTGGTCATTCAAACCCTGAACAATCTGGAACCAGTTCTGG
TTTTGATGACGAGCACGCAGTGAGCGAGATAATGTTTCGTGTGCAAGACT
TATTCAAAAAGCAACTTGTACACTGCGAACTTTGA

protein sequence of Gchil2009.t1

>Gchil2009.t1 ID=Gchil2009.t1|Name=Gchil2009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=795bp
MIAFLSFTSFPYFYEAKAQRYKRLCAKSVTPLVIGINQYSHDASVALIDA
NSGKLLFAQSKERLTRRKHDGGDVSELVRHAIESIKTDNERALDVASEVR
LVVANNHHFRILPFESRIPFQVSLGYLPSSYQSPWNLIGSPASFLKGNEK
YAPRATKIELSHHLAHASSAVYSCPFTRGVVVVMDGMGDARDDWLVAQTC
SDSSHISELSCSDFVRNDPGFREYPEDVDSRPGVSFREAETAYVFEKSQR
GVQFSRIFKRWTPENAPPELSNHSFEEMDSIGAMYSRVSAIIFKDWNNCG
KVMGLAPYGQNQANPSDKKRYFMNGHLYDGSIDVEPGKRKGLEHLGKDIS
NCDDNTPSGRELRLHFQRIAYHVQRDLEEVVADFISRLMSDTGERNLVLA
GGVALNSSMNGMLSSHPCVEGFYVPPFPGDEGIAIGCANFGHSLISRLRG
QVMRYHPKSILPYLGRKYSQQDIWHAIEYYSPWIQKKRGESAKEAAVALA
QGKVVAWFSGRGEFGPRALGSRSLLADPRDKAMVTHLNKLVKKRESFRPF
APSILAEYASEWFGNCSSESSPFMSLTRPAKMPNLIPAVVHVDGTSRLQT
VIQEQNPEFYALINHFFEITNIPMVLNTSFNTSKEPIVESPIDAINTFLK
TDGIDHLIFPGHILSKRDEFSFSLNCALSSSCSGFRSRQIQNVRGESLQT
TIAVYGRTFQSDGKTFNDLPDEQEVELLDGQQLEILEIVHELGVCTISDV
LREIGHSNPEQSGTSSGFDDEHAVSEIMFRVQDLFKKQLVHCEL*

mRNA from alignment at tig00004439_pilon:1697301..1699796+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2009.t1 ID=Gchil2009.t1|Name=Gchil2009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2496bp|location=Sequence derived from alignment at tig00004439_pilon:1697301..1699796+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTGCGTTTCTCAGTTTCACTTCGTTTCCGTATTTTTATGAAGCTAA
GGCTCAGCGATACAAGCGTCTCTGCGCAAAGAGCGTCACTCCCCTCGTAA
TCGGCATTAATCAGTACTCACATGATGCCTCAGTGGCTTTAATCGACGCC
AATTCAGGCAAGCTCTTGTTTGCTCAAAGCAAAGAGCGCCTAACTCGCCG
TAAACATGACGGTGGAGACGTCTCAGAGCTGGTTCGCCATGCAATCGAGT
CGATAAAAACTGACAACGAAAGGGCATTAGACGTTGCATCCGAAGTACGG
CTAGTCGTTGCAAACAACCACCACTTTCGGATTTTGCCTTTTGAGTCTCG
TATTCCGTTTCAAGTATCATTAGGATATCTTCCTTCATCGTATCAGTCGC
CATGGAACCTCATAGGCTCACCAGCATCATTTCTGAAAGGAAACGAAAAG
TATGCGCCTAGGGCTACCAAGATTGAGCTATCTCATCACCTTGCCCACGC
TTCCTCTGCTGTATACAGTTGTCCTTTCACCCGTGGGGTTGTGGTTGTAA
TGGATGGTATGGGGGACGCAAGAGATGACTGGCTCGTTGCGCAAACATGC
AGCGATTCATCTCACATATCTGAGCTTTCCTGTTCTGATTTTGTGCGAAA
CGATCCAGGTTTCAGAGAATATCCCGAAGATGTGGACAGCCGACCTGGTG
TGTCATTCAGAGAGGCGGAAACGGCTTATGTCTTTGAAAAGAGTCAGAGA
GGTGTACAATTTTCTCGAATATTCAAGCGATGGACCCCAGAAAACGCTCC
TCCTGAACTGTCAAATCACTCCTTTGAAGAAATGGATAGCATCGGGGCAA
TGTACAGTCGTGTATCGGCAATTATATTTAAAGACTGGAACAACTGTGGA
AAGGTAAGCATTAACTAACTTGCATTGAAATGTGGAATAACTATAGAAGG
GGTACTGGGAATGTGCTTCCCAGGATTGGCGTTTTCCTGACACAGAACTT
TCTATTTTCGCAAGGTAATGGGTTTAGCTCCCTACGGACAAAATCAAGCA
AACCCCTCTGATAAAAAAAGGTATTTCATGAATGGTCACCTTTATGATGG
CAGTATCGATGTAGAACCTGGAAAAAGAAAAGGGCTAGAGCACCTGGGAA
AAGACATTTCCAACTGCGACGACAACACACCCAGCGGAAGAGAACTTAGA
CTTCATTTCCAACGTATTGCATATCACGTCCAACGTGATTTGGAGGAAGT
CGTTGCAGACTTCATTTCAAGGTTAATGTCCGACACAGGGGAACGTAATC
TTGTTCTTGCCGGTGGCGTTGCACTGAACAGCAGCATGAACGGCATGCTA
AGCTCACATCCATGCGTGGAAGGATTTTACGTGCCGCCATTCCCAGGAGA
CGAGGGCATTGCTATCGGTTGTGCTAATTTTGGTCATTCATTAATTTCTC
GTCTGCGTGGCCAAGTTATGCGATATCACCCGAAGAGTATCTTGCCATAT
CTGGGTCGAAAGTATTCCCAACAAGACATTTGGCATGCAATAGAATATTA
CAGCCCTTGGATTCAAAAAAAACGTGGCGAGTCTGCGAAAGAAGCCGCTG
TAGCGCTAGCCCAGGGGAAAGTCGTCGCATGGTTTAGTGGAAGAGGTGAA
TTTGGCCCAAGGGCTTTGGGAAGCCGATCACTTCTCGCAGACCCAAGAGA
CAAAGCAATGGTTACGCATCTTAATAAGCTTGTGAAGAAACGAGAAAGTT
TCCGGCCATTTGCTCCCTCCATCCTGGCGGAATACGCGTCAGAATGGTTT
GGAAACTGCAGTTCGGAATCTTCACCATTTATGTCGCTGACACGGCCGGC
AAAAATGCCAAACTTGATACCCGCTGTCGTCCATGTCGATGGAACTTCTC
GTTTGCAAACAGTAATTCAGGAACAAAATCCAGAATTCTATGCACTGATT
AATCACTTTTTCGAAATAACGAACATACCTATGGTTCTTAATACCTCATT
CAACACTTCAAAAGAACCAATCGTTGAGTCACCAATTGATGCCATCAATA
CTTTCCTCAAAACCGACGGCATCGATCACCTCATTTTTCCAGGCCATATT
TTGTCAAAGAGAGACGAGTTTTCATTCTCACTAAACTGTGCACTATCATC
TTCATGCTCTGGCTTCAGGTCGAGGCAGATTCAAAATGTCCGTGGCGAAA
GCTTACAAACAACCATCGCTGTCTACGGGAGAACATTTCAGAGCGATGGC
AAAACCTTCAATGACCTTCCAGATGAACAAGAAGTGGAATTACTTGACGG
CCAACAGCTCGAAATATTAGAAATCGTTCACGAGCTCGGTGTATGCACCA
TATCTGATGTTCTACGCGAAATTGGTCATTCAAACCCTGAACAATCTGGA
ACCAGTTCTGGTTTTGATGACGAGCACGCAGTGAGCGAGATAATGTTTCG
TGTGCAAGACTTATTCAAAAAGCAACTTGTACACTGCGAACTTTGA

Coding sequence (CDS) from alignment at tig00004439_pilon:1697301..1699796+

>Gchil2009.t1 ID=Gchil2009.t1|Name=Gchil2009.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2385bp|location=Sequence derived from alignment at tig00004439_pilon:1697301..1699796+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTGCGTTTCTCAGTTTCACTTCGTTTCCGTATTTTTATGAAGCTAA
GGCTCAGCGATACAAGCGTCTCTGCGCAAAGAGCGTCACTCCCCTCGTAA
TCGGCATTAATCAGTACTCACATGATGCCTCAGTGGCTTTAATCGACGCC
AATTCAGGCAAGCTCTTGTTTGCTCAAAGCAAAGAGCGCCTAACTCGCCG
TAAACATGACGGTGGAGACGTCTCAGAGCTGGTTCGCCATGCAATCGAGT
CGATAAAAACTGACAACGAAAGGGCATTAGACGTTGCATCCGAAGTACGG
CTAGTCGTTGCAAACAACCACCACTTTCGGATTTTGCCTTTTGAGTCTCG
TATTCCGTTTCAAGTATCATTAGGATATCTTCCTTCATCGTATCAGTCGC
CATGGAACCTCATAGGCTCACCAGCATCATTTCTGAAAGGAAACGAAAAG
TATGCGCCTAGGGCTACCAAGATTGAGCTATCTCATCACCTTGCCCACGC
TTCCTCTGCTGTATACAGTTGTCCTTTCACCCGTGGGGTTGTGGTTGTAA
TGGATGGTATGGGGGACGCAAGAGATGACTGGCTCGTTGCGCAAACATGC
AGCGATTCATCTCACATATCTGAGCTTTCCTGTTCTGATTTTGTGCGAAA
CGATCCAGGTTTCAGAGAATATCCCGAAGATGTGGACAGCCGACCTGGTG
TGTCATTCAGAGAGGCGGAAACGGCTTATGTCTTTGAAAAGAGTCAGAGA
GGTGTACAATTTTCTCGAATATTCAAGCGATGGACCCCAGAAAACGCTCC
TCCTGAACTGTCAAATCACTCCTTTGAAGAAATGGATAGCATCGGGGCAA
TGTACAGTCGTGTATCGGCAATTATATTTAAAGACTGGAACAACTGTGGA
AAGGTAATGGGTTTAGCTCCCTACGGACAAAATCAAGCAAACCCCTCTGA
TAAAAAAAGGTATTTCATGAATGGTCACCTTTATGATGGCAGTATCGATG
TAGAACCTGGAAAAAGAAAAGGGCTAGAGCACCTGGGAAAAGACATTTCC
AACTGCGACGACAACACACCCAGCGGAAGAGAACTTAGACTTCATTTCCA
ACGTATTGCATATCACGTCCAACGTGATTTGGAGGAAGTCGTTGCAGACT
TCATTTCAAGGTTAATGTCCGACACAGGGGAACGTAATCTTGTTCTTGCC
GGTGGCGTTGCACTGAACAGCAGCATGAACGGCATGCTAAGCTCACATCC
ATGCGTGGAAGGATTTTACGTGCCGCCATTCCCAGGAGACGAGGGCATTG
CTATCGGTTGTGCTAATTTTGGTCATTCATTAATTTCTCGTCTGCGTGGC
CAAGTTATGCGATATCACCCGAAGAGTATCTTGCCATATCTGGGTCGAAA
GTATTCCCAACAAGACATTTGGCATGCAATAGAATATTACAGCCCTTGGA
TTCAAAAAAAACGTGGCGAGTCTGCGAAAGAAGCCGCTGTAGCGCTAGCC
CAGGGGAAAGTCGTCGCATGGTTTAGTGGAAGAGGTGAATTTGGCCCAAG
GGCTTTGGGAAGCCGATCACTTCTCGCAGACCCAAGAGACAAAGCAATGG
TTACGCATCTTAATAAGCTTGTGAAGAAACGAGAAAGTTTCCGGCCATTT
GCTCCCTCCATCCTGGCGGAATACGCGTCAGAATGGTTTGGAAACTGCAG
TTCGGAATCTTCACCATTTATGTCGCTGACACGGCCGGCAAAAATGCCAA
ACTTGATACCCGCTGTCGTCCATGTCGATGGAACTTCTCGTTTGCAAACA
GTAATTCAGGAACAAAATCCAGAATTCTATGCACTGATTAATCACTTTTT
CGAAATAACGAACATACCTATGGTTCTTAATACCTCATTCAACACTTCAA
AAGAACCAATCGTTGAGTCACCAATTGATGCCATCAATACTTTCCTCAAA
ACCGACGGCATCGATCACCTCATTTTTCCAGGCCATATTTTGTCAAAGAG
AGACGAGTTTTCATTCTCACTAAACTGTGCACTATCATCTTCATGCTCTG
GCTTCAGGTCGAGGCAGATTCAAAATGTCCGTGGCGAAAGCTTACAAACA
ACCATCGCTGTCTACGGGAGAACATTTCAGAGCGATGGCAAAACCTTCAA
TGACCTTCCAGATGAACAAGAAGTGGAATTACTTGACGGCCAACAGCTCG
AAATATTAGAAATCGTTCACGAGCTCGGTGTATGCACCATATCTGATGTT
CTACGCGAAATTGGTCATTCAAACCCTGAACAATCTGGAACCAGTTCTGG
TTTTGATGACGAGCACGCAGTGAGCGAGATAATGTTTCGTGTGCAAGACT
TATTCAAAAAGCAACTTGTACACTGCGAACTTTGA