Gchil2000.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2000.t1
Unique NameGchil2000.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1596638..1597564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705377.1
PFAMsHydrolase_4
Max annot lvl2759|Eukaryota
KEGG rclassRC00020,RC00041
KEGG koko:K01054
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko04714,ko04723,ko04923,map00561,map01100,map04714,map04723,map04923
KEGG ModuleM00098
Evalue4.98e-56
EggNOG OGsCOG2267@1|root,KOG1455@2759|Eukaryota
EC3.1.1.23
Descriptionacylglycerol lipase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2000Gchil2000Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1596638..1597564 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2000.t1.stop1Gchil2000.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1596638..1596640 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2000.t1.CDS1Gchil2000.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1596638..1597564 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2000.t1.exon1Gchil2000.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1596638..1597564 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2000.t1.start1Gchil2000.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1597562..1597564 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2000.t1Gchil2000.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1596638..1597564 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2000.t1 ID=Gchil2000.t1|Name=Gchil2000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=309bp
MAYNYLESSLPSSFEPEQLKLFSWLPEQPWRAAVFLQHGFRSHTHYNFLR
NDTPTKRCIYGEGTTVNDTSLIRELNNRNFAVFGHDHVGHGRSSGVRAYF
PSFKTLVDDAILHINHINVEHELSKNEIPIFLIGHSMGGTVTILAAREAP
TLISGIALSSAATEPPANMFGLVGRINRALSGITSSLFPYLEVLRLPKSP
DIHMQAMFEADELNCNAEGVRARVGRGFLDAYEDISNNAHTFSTSFLSVH
GEHDTLIHPMAAKRFYDAAISKDKTLQTGTGRWHNIFTEKGKEEMWFLFA
DWIGQRCK*
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spliced messenger RNA

>Gchil2000.t1 ID=Gchil2000.t1|Name=Gchil2000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00004439_pilon:1596638..1597564- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTATAACTACTTGGAGTCGTCGTTGCCGTCATCCTTTGAACCAGA
GCAACTAAAGCTCTTCAGTTGGCTTCCTGAACAGCCATGGCGTGCTGCAG
TGTTTCTCCAGCACGGATTTCGTTCACACACTCATTACAACTTTTTACGC
AATGACACCCCGACAAAGCGATGTATCTACGGTGAGGGAACAACTGTCAA
CGATACTTCCCTCATTAGAGAACTAAATAATCGCAATTTCGCCGTATTTG
GTCATGACCATGTGGGACATGGCCGTTCAAGTGGTGTTCGTGCGTACTTT
CCATCCTTCAAAACGCTTGTCGATGATGCCATCCTTCACATAAACCACAT
CAACGTCGAACACGAACTCAGTAAAAACGAGATTCCGATTTTTCTCATCG
GACATTCAATGGGTGGTACGGTCACCATCCTCGCAGCCAGAGAAGCGCCG
ACTTTGATATCCGGCATTGCATTATCGTCTGCAGCAACCGAACCTCCGGC
GAACATGTTTGGTTTGGTGGGTAGAATCAATCGCGCCCTTTCCGGAATAA
CCAGTTCGCTGTTCCCGTATCTCGAGGTTTTGAGACTTCCGAAATCCCCC
GACATTCACATGCAAGCAATGTTCGAAGCCGACGAACTCAACTGCAATGC
CGAGGGTGTTCGCGCTCGAGTTGGGCGAGGGTTTTTGGACGCTTATGAAG
ACATAAGCAACAATGCGCATACGTTCAGCACCTCGTTTTTGTCAGTTCAT
GGTGAACATGACACTTTGATTCACCCCATGGCTGCGAAGCGCTTCTACGA
CGCTGCTATCAGTAAAGACAAAACGCTACAGACTGGTACTGGACGATGGC
ACAACATTTTCACTGAGAAAGGTAAAGAGGAAATGTGGTTCTTGTTTGCT
GACTGGATCGGCCAGAGGTGCAAGTAA
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protein sequence of Gchil2000.t1

>Gchil2000.t1 ID=Gchil2000.t1|Name=Gchil2000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=309bp
MAYNYLESSLPSSFEPEQLKLFSWLPEQPWRAAVFLQHGFRSHTHYNFLR
NDTPTKRCIYGEGTTVNDTSLIRELNNRNFAVFGHDHVGHGRSSGVRAYF
PSFKTLVDDAILHINHINVEHELSKNEIPIFLIGHSMGGTVTILAAREAP
TLISGIALSSAATEPPANMFGLVGRINRALSGITSSLFPYLEVLRLPKSP
DIHMQAMFEADELNCNAEGVRARVGRGFLDAYEDISNNAHTFSTSFLSVH
GEHDTLIHPMAAKRFYDAAISKDKTLQTGTGRWHNIFTEKGKEEMWFLFA
DWIGQRCK*
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mRNA from alignment at tig00004439_pilon:1596638..1597564-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2000.t1 ID=Gchil2000.t1|Name=Gchil2000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00004439_pilon:1596638..1597564- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTATAACTACTTGGAGTCGTCGTTGCCGTCATCCTTTGAACCAGA
GCAACTAAAGCTCTTCAGTTGGCTTCCTGAACAGCCATGGCGTGCTGCAG
TGTTTCTCCAGCACGGATTTCGTTCACACACTCATTACAACTTTTTACGC
AATGACACCCCGACAAAGCGATGTATCTACGGTGAGGGAACAACTGTCAA
CGATACTTCCCTCATTAGAGAACTAAATAATCGCAATTTCGCCGTATTTG
GTCATGACCATGTGGGACATGGCCGTTCAAGTGGTGTTCGTGCGTACTTT
CCATCCTTCAAAACGCTTGTCGATGATGCCATCCTTCACATAAACCACAT
CAACGTCGAACACGAACTCAGTAAAAACGAGATTCCGATTTTTCTCATCG
GACATTCAATGGGTGGTACGGTCACCATCCTCGCAGCCAGAGAAGCGCCG
ACTTTGATATCCGGCATTGCATTATCGTCTGCAGCAACCGAACCTCCGGC
GAACATGTTTGGTTTGGTGGGTAGAATCAATCGCGCCCTTTCCGGAATAA
CCAGTTCGCTGTTCCCGTATCTCGAGGTTTTGAGACTTCCGAAATCCCCC
GACATTCACATGCAAGCAATGTTCGAAGCCGACGAACTCAACTGCAATGC
CGAGGGTGTTCGCGCTCGAGTTGGGCGAGGGTTTTTGGACGCTTATGAAG
ACATAAGCAACAATGCGCATACGTTCAGCACCTCGTTTTTGTCAGTTCAT
GGTGAACATGACACTTTGATTCACCCCATGGCTGCGAAGCGCTTCTACGA
CGCTGCTATCAGTAAAGACAAAACGCTACAGACTGGTACTGGACGATGGC
ACAACATTTTCACTGAGAAAGGTAAAGAGGAAATGTGGTTCTTGTTTGCT
GACTGGATCGGCCAGAGGTGCAAGTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1596638..1597564-

>Gchil2000.t1 ID=Gchil2000.t1|Name=Gchil2000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00004439_pilon:1596638..1597564- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTATAACTACTTGGAGTCGTCGTTGCCGTCATCCTTTGAACCAGA
GCAACTAAAGCTCTTCAGTTGGCTTCCTGAACAGCCATGGCGTGCTGCAG
TGTTTCTCCAGCACGGATTTCGTTCACACACTCATTACAACTTTTTACGC
AATGACACCCCGACAAAGCGATGTATCTACGGTGAGGGAACAACTGTCAA
CGATACTTCCCTCATTAGAGAACTAAATAATCGCAATTTCGCCGTATTTG
GTCATGACCATGTGGGACATGGCCGTTCAAGTGGTGTTCGTGCGTACTTT
CCATCCTTCAAAACGCTTGTCGATGATGCCATCCTTCACATAAACCACAT
CAACGTCGAACACGAACTCAGTAAAAACGAGATTCCGATTTTTCTCATCG
GACATTCAATGGGTGGTACGGTCACCATCCTCGCAGCCAGAGAAGCGCCG
ACTTTGATATCCGGCATTGCATTATCGTCTGCAGCAACCGAACCTCCGGC
GAACATGTTTGGTTTGGTGGGTAGAATCAATCGCGCCCTTTCCGGAATAA
CCAGTTCGCTGTTCCCGTATCTCGAGGTTTTGAGACTTCCGAAATCCCCC
GACATTCACATGCAAGCAATGTTCGAAGCCGACGAACTCAACTGCAATGC
CGAGGGTGTTCGCGCTCGAGTTGGGCGAGGGTTTTTGGACGCTTATGAAG
ACATAAGCAACAATGCGCATACGTTCAGCACCTCGTTTTTGTCAGTTCAT
GGTGAACATGACACTTTGATTCACCCCATGGCTGCGAAGCGCTTCTACGA
CGCTGCTATCAGTAAAGACAAAACGCTACAGACTGGTACTGGACGATGGC
ACAACATTTTCACTGAGAAAGGTAAAGAGGAAATGTGGTTCTTGTTTGCT
GACTGGATCGGCCAGAGGTGCAAGTAA
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