Gchil1997.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1997.t1
Unique Name	Gchil1997.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	538

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1590517..1592130 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4558.Sb01g039390.1
PFAMs	HSP70
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03283
KEGG TC	1.A.33.1
KEGG Pathway	ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG Module	M00353,M00355
Evalue	1.37e-266
EggNOG OGs	COG0443@1\|root,KOG0101@2759\|Eukaryota,37K68@33090\|Viridiplantae,3GAQN@35493\|Streptophyta,3M4FR@4447\|Liliopsida,3I3EU@38820\|Poales
Description	Belongs to the heat shock protein 70 family
COG category	O
BRITE	ko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1997	Gchil1997	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 1590517..1592130 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1997.t1.start1	Gchil1997.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 1590517..1590519 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1997.t1.CDS1	Gchil1997.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1590517..1592130 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1997.t1.exon1	Gchil1997.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1590517..1592130 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1997.t1.stop1	Gchil1997.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 1592128..1592130 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1997.t1	Gchil1997.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 1590517..1592130 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:1590517..1592130+
coding sequence from alignment at tig00004439_pilon:1590517..1592130+

mRNA sequence

>Gchil1997.t1 ID=Gchil1997.t1|Name=Gchil1997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=538bp
MKDVAESYLGKPIKSAVVTVPAYFNDSQRLATKDAGTIAGINVSRIINEP
TAAAIAYGLDRKASGHTARERNVLIFDLGGGTFDVSLLTIEDGIFEVKAT
AGDTHLGGEDFDNRMVNHFMNEFKRKYKKDISGNARSVRRLRTQCERAKR
QLSSATQATIEIDSLYEGTDFYSSVTRAKFEELCMDLFRGTLEPVEKVLR
DSKIPKADVDDIVLVGGSTRIPKVQSLLVDFFNGKELCKNINPDEAVAHG
AAVQAAILAGDTSEKTQDLLLLDVTPLSLGIETAGAVMTVLIKRNTTIPT
KKQQIFSTYADNQPGVLIQVYEGERTRTKDNNLLGKFELSGIPPAPRGVP
QIEVTFDIDANGILNVSAEDKSTGKKNKITITNDKGRLSKEDIEKMVQDA
EKYKAEDDAAKAKIESRNALENYCYTLRNTLSEDKVKDKISEEDKKSIED
KVAEVLKWMEDNETAEKEEYDEKQKSIEAIATPIITKMYQSGEGAGGMPG
GMPGGMPGGMPGGMPGGMGAGGTTPTGGEDVEISEVD*

spliced messenger RNA

>Gchil1997.t1 ID=Gchil1997.t1|Name=Gchil1997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00004439_pilon:1590517..1592130+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgaaagatgtcgccgaatcctaccttggaaagcccataaagtcggcagt
ggtcacagtccccgcctatttcaacgattctcagcgtctggcaaccaagg
atgccggaaccattgctgGCATTAATGTGTCTCGTATCATCAACGAGCCT
ACTGCTGCAGCCATTGCTTACGGCCTGGATCGTAAGGCAAGCGGACACAC
TGCTCGCGAAAGAAACGTTTTGATTTTCGATCTTGGTGGTGGTACTTTTG
ATGTATCCTTGCTTACTATTGAGGATGGTATTTTTGAAGTGAAAGCTACT
GCTGGAGACACTCATCTTGGTGGTGAAGATTTCGACAACCGTATGGTCAA
CCACTTCATGAACGAATTCAAGCGCAAGTACAAGAAGGACATCTCTGGAA
ATGCGCGTTCAGTTCGCCGTCTTCGCACCCAATGCGAACGTGCCAAACGC
CAGCTCTCTTCTGCCACGCAGGCCACCATTGAAATTGACTCCCTCTACGA
AGGTACTGATTTCTATTCCTCAGTCACTCGGGCCAAGTTCGAGGAGCTTT
GCATGGATCTCTTCAGAGGAACTTTGGAACCAGTGGAAAAGGTGCTGCGC
GACTCCAAAATCCCCAAGGCCGATGTAGATGATATTGTGCTGGTTGGCGG
ATCCACTCGTATCCCGAAAGTTCAAAGCCTCCTCGTCGACTTCTTCAACG
GCAAAGAGCTTTGCAAGAACATTAATCCGGATGAAGCCGTTGCCCATGGT
GCCGCAGTTCAAGCTGCAATCCTAGCGggtgatacttccgagaaaactca
agatctccttctccttgatgtcaccccgctgtcactcggtattgaaactg
ccggtgcagttatgactgttctgatcAAGCGTAACACTACTATCCCTACT
AAGAAACAGCAAATCTTCTCTACCTACGCTGATAACCAACCTGGTGTGCT
CATTCAGGTCTATGAAGGGGAACGTACTCGCACGAAAGATAACAATTTGC
TTGGGAAATTCGAACTCTCTGGAATTCCTCCGGCACCTCGCGGCGTTCCG
CAGATTGAAGTCACCTTTGACATTGATGCAAATGGCATTCTGAATGTCAG
CGCAGAAGACAAGAGCACTGGTAAGAAAAATAAGATTACTATTACAAATG
ATAAGGGCCGCCTTAGCAAGGAAGATATTGAGAAGATGGTTCAAGATGCG
GAGAAATACAAAGCCGAGGACGACGCCGCAAAGGCGAAGATTGAGTCACG
GAATGCCCTTGAAAATTACTGCTACACTTTGCGAAACACTCTTAGCGAGG
ACAAGGTGAAGGACAAGATTAGTGAGGAAGATAAGAAGTCAATAGAAGAC
AAGGTCGCTGAGGTCCTCAAGTGGATGGAAGACAATGAAACTGCAGAGAA
GGAAGAATATGACGAGAAGCAAAAATCCATTGAAGCTATCGCCACTCCGA
TTATTACCAAGATGTACCAAAGCGGTGAGGGTGCGGGTGGTATGCCTGGT
GGCATGCCTGGAGGCATGCCTGGTGGAATGCCCGGAGGCATGCCCGGAGG
CATGGGTGCCGGTGGTACCACTCCAACCGGCGGTGAAGATGTCGAAATAT
CTGAAGTCGATTAA

protein sequence of Gchil1997.t1

>Gchil1997.t1 ID=Gchil1997.t1|Name=Gchil1997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=538bp
MKDVAESYLGKPIKSAVVTVPAYFNDSQRLATKDAGTIAGINVSRIINEP
TAAAIAYGLDRKASGHTARERNVLIFDLGGGTFDVSLLTIEDGIFEVKAT
AGDTHLGGEDFDNRMVNHFMNEFKRKYKKDISGNARSVRRLRTQCERAKR
QLSSATQATIEIDSLYEGTDFYSSVTRAKFEELCMDLFRGTLEPVEKVLR
DSKIPKADVDDIVLVGGSTRIPKVQSLLVDFFNGKELCKNINPDEAVAHG
AAVQAAILAGDTSEKTQDLLLLDVTPLSLGIETAGAVMTVLIKRNTTIPT
KKQQIFSTYADNQPGVLIQVYEGERTRTKDNNLLGKFELSGIPPAPRGVP
QIEVTFDIDANGILNVSAEDKSTGKKNKITITNDKGRLSKEDIEKMVQDA
EKYKAEDDAAKAKIESRNALENYCYTLRNTLSEDKVKDKISEEDKKSIED
KVAEVLKWMEDNETAEKEEYDEKQKSIEAIATPIITKMYQSGEGAGGMPG
GMPGGMPGGMPGGMPGGMGAGGTTPTGGEDVEISEVD*

mRNA from alignment at tig00004439_pilon:1590517..1592130+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1997.t1 ID=Gchil1997.t1|Name=Gchil1997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00004439_pilon:1590517..1592130+ (Gracilaria chilensis NLEC103_M9 male)
atgaaagatgtcgccgaatcctaccttggaaagcccataaagtcggcagt
ggtcacagtccccgcctatttcaacgattctcagcgtctggcaaccaagg
atgccggaaccattgctgGCATTAATGTGTCTCGTATCATCAACGAGCCT
ACTGCTGCAGCCATTGCTTACGGCCTGGATCGTAAGGCAAGCGGACACAC
TGCTCGCGAAAGAAACGTTTTGATTTTCGATCTTGGTGGTGGTACTTTTG
ATGTATCCTTGCTTACTATTGAGGATGGTATTTTTGAAGTGAAAGCTACT
GCTGGAGACACTCATCTTGGTGGTGAAGATTTCGACAACCGTATGGTCAA
CCACTTCATGAACGAATTCAAGCGCAAGTACAAGAAGGACATCTCTGGAA
ATGCGCGTTCAGTTCGCCGTCTTCGCACCCAATGCGAACGTGCCAAACGC
CAGCTCTCTTCTGCCACGCAGGCCACCATTGAAATTGACTCCCTCTACGA
AGGTACTGATTTCTATTCCTCAGTCACTCGGGCCAAGTTCGAGGAGCTTT
GCATGGATCTCTTCAGAGGAACTTTGGAACCAGTGGAAAAGGTGCTGCGC
GACTCCAAAATCCCCAAGGCCGATGTAGATGATATTGTGCTGGTTGGCGG
ATCCACTCGTATCCCGAAAGTTCAAAGCCTCCTCGTCGACTTCTTCAACG
GCAAAGAGCTTTGCAAGAACATTAATCCGGATGAAGCCGTTGCCCATGGT
GCCGCAGTTCAAGCTGCAATCCTAGCGggtgatacttccgagaaaactca
agatctccttctccttgatgtcaccccgctgtcactcggtattgaaactg
ccggtgcagttatgactgttctgatcAAGCGTAACACTACTATCCCTACT
AAGAAACAGCAAATCTTCTCTACCTACGCTGATAACCAACCTGGTGTGCT
CATTCAGGTCTATGAAGGGGAACGTACTCGCACGAAAGATAACAATTTGC
TTGGGAAATTCGAACTCTCTGGAATTCCTCCGGCACCTCGCGGCGTTCCG
CAGATTGAAGTCACCTTTGACATTGATGCAAATGGCATTCTGAATGTCAG
CGCAGAAGACAAGAGCACTGGTAAGAAAAATAAGATTACTATTACAAATG
ATAAGGGCCGCCTTAGCAAGGAAGATATTGAGAAGATGGTTCAAGATGCG
GAGAAATACAAAGCCGAGGACGACGCCGCAAAGGCGAAGATTGAGTCACG
GAATGCCCTTGAAAATTACTGCTACACTTTGCGAAACACTCTTAGCGAGG
ACAAGGTGAAGGACAAGATTAGTGAGGAAGATAAGAAGTCAATAGAAGAC
AAGGTCGCTGAGGTCCTCAAGTGGATGGAAGACAATGAAACTGCAGAGAA
GGAAGAATATGACGAGAAGCAAAAATCCATTGAAGCTATCGCCACTCCGA
TTATTACCAAGATGTACCAAAGCGGTGAGGGTGCGGGTGGTATGCCTGGT
GGCATGCCTGGAGGCATGCCTGGTGGAATGCCCGGAGGCATGCCCGGAGG
CATGGGTGCCGGTGGTACCACTCCAACCGGCGGTGAAGATGTCGAAATAT
CTGAAGTCGATTAA

Coding sequence (CDS) from alignment at tig00004439_pilon:1590517..1592130+

>Gchil1997.t1 ID=Gchil1997.t1|Name=Gchil1997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1614bp|location=Sequence derived from alignment at tig00004439_pilon:1590517..1592130+ (Gracilaria chilensis NLEC103_M9 male)
atgaaagatgtcgccgaatcctaccttggaaagcccataaagtcggcagt
ggtcacagtccccgcctatttcaacgattctcagcgtctggcaaccaagg
atgccggaaccattgctgGCATTAATGTGTCTCGTATCATCAACGAGCCT
ACTGCTGCAGCCATTGCTTACGGCCTGGATCGTAAGGCAAGCGGACACAC
TGCTCGCGAAAGAAACGTTTTGATTTTCGATCTTGGTGGTGGTACTTTTG
ATGTATCCTTGCTTACTATTGAGGATGGTATTTTTGAAGTGAAAGCTACT
GCTGGAGACACTCATCTTGGTGGTGAAGATTTCGACAACCGTATGGTCAA
CCACTTCATGAACGAATTCAAGCGCAAGTACAAGAAGGACATCTCTGGAA
ATGCGCGTTCAGTTCGCCGTCTTCGCACCCAATGCGAACGTGCCAAACGC
CAGCTCTCTTCTGCCACGCAGGCCACCATTGAAATTGACTCCCTCTACGA
AGGTACTGATTTCTATTCCTCAGTCACTCGGGCCAAGTTCGAGGAGCTTT
GCATGGATCTCTTCAGAGGAACTTTGGAACCAGTGGAAAAGGTGCTGCGC
GACTCCAAAATCCCCAAGGCCGATGTAGATGATATTGTGCTGGTTGGCGG
ATCCACTCGTATCCCGAAAGTTCAAAGCCTCCTCGTCGACTTCTTCAACG
GCAAAGAGCTTTGCAAGAACATTAATCCGGATGAAGCCGTTGCCCATGGT
GCCGCAGTTCAAGCTGCAATCCTAGCGggtgatacttccgagaaaactca
agatctccttctccttgatgtcaccccgctgtcactcggtattgaaactg
ccggtgcagttatgactgttctgatcAAGCGTAACACTACTATCCCTACT
AAGAAACAGCAAATCTTCTCTACCTACGCTGATAACCAACCTGGTGTGCT
CATTCAGGTCTATGAAGGGGAACGTACTCGCACGAAAGATAACAATTTGC
TTGGGAAATTCGAACTCTCTGGAATTCCTCCGGCACCTCGCGGCGTTCCG
CAGATTGAAGTCACCTTTGACATTGATGCAAATGGCATTCTGAATGTCAG
CGCAGAAGACAAGAGCACTGGTAAGAAAAATAAGATTACTATTACAAATG
ATAAGGGCCGCCTTAGCAAGGAAGATATTGAGAAGATGGTTCAAGATGCG
GAGAAATACAAAGCCGAGGACGACGCCGCAAAGGCGAAGATTGAGTCACG
GAATGCCCTTGAAAATTACTGCTACACTTTGCGAAACACTCTTAGCGAGG
ACAAGGTGAAGGACAAGATTAGTGAGGAAGATAAGAAGTCAATAGAAGAC
AAGGTCGCTGAGGTCCTCAAGTGGATGGAAGACAATGAAACTGCAGAGAA
GGAAGAATATGACGAGAAGCAAAAATCCATTGAAGCTATCGCCACTCCGA
TTATTACCAAGATGTACCAAAGCGGTGAGGGTGCGGGTGGTATGCCTGGT
GGCATGCCTGGAGGCATGCCTGGTGGAATGCCCGGAGGCATGCCCGGAGG
CATGGGTGCCGGTGGTACCACTCCAACCGGCGGTGAAGATGTCGAAATAT
CTGAAGTCGATTAA