Gchil1990.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1990.t1
Unique NameGchil1990.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1576427..1576955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702349.1
Preferred nameUBTD2
PFAMsUBD,ubiquitin
Max annot lvl2759|Eukaryota
KEGG koko:K13123
KEGG ModuleM00355
Evalue1.19e-31
EggNOG OGsKOG0013@1|root,KOG0013@2759|Eukaryota
DescriptionUbiquitin-binding domain
COG categoryADK
BRITEko00000,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1990Gchil1990Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1576427..1576955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1990.t1Gchil1990.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1576427..1576955 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1990.t1.stop1Gchil1990.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1576427..1576429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1990.t1.CDS1Gchil1990.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1576427..1576666 -
Gchil1990.t1.CDS2Gchil1990.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1576743..1576955 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1990.t1.exon1Gchil1990.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1576427..1576666 -
Gchil1990.t1.exon2Gchil1990.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1576743..1576955 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1990.t1.intron1Gchil1990.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1576667..1576742 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1990.t1.start1Gchil1990.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1576953..1576955 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1990.t1 ID=Gchil1990.t1|Name=Gchil1990.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=151bp
MGCASSKDEQRTTVAELPQWHGHIRSPRPWRLEPAISSEHLVRLRKEFWE
TRVEGRSEMWQALRFAAESESDELREETVKAAGLRPANRRCTMQTMFDEL
GALYEIPMYALIDPLNLDEQPVHKEFKDAAKAVTDYVNADEKSKRMPRTL
*
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spliced messenger RNA

>Gchil1990.t1 ID=Gchil1990.t1|Name=Gchil1990.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=453bp|location=Sequence derived from alignment at tig00004439_pilon:1576427..1576955- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGTGTGCTTCGTCGAAGGATGAGCAGCGGACGACTGTCGCAGAACT
CCCGCAGTGGCATGGTCATATTCGATCACCACGGCCATGGAGACTTGAGC
CCGCAATCTCGTCGGAGCATCTTGTACGGCTGCGGAAAGAATTCTGGGAA
ACTAGAGTCGAGGGGCGTTCGGAAATGTGGCAAGCTCTTCGTTTTGCAGC
CGAGTCCGAGTCCGATGAGTTGAGGGAGGAGACCGTCAAGGCGGCTGGAT
TGAGACCAGCCAATCGCCGCTGCACGATGCAAACCATGTTTGATGAATTG
GGCGCCTTGTACGAGATTCCTATGTATGCTCTTATCGATCCCTTAAATTT
GGACGAACAACCTGTGCACAAGGAATTCAAGGATGCTGCCAAAGCTGTAA
CCGATTATGTCAATGCGGACGAAAAGTCGAAGCGGATGCCTAGAACGTTG
TGA
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protein sequence of Gchil1990.t1

>Gchil1990.t1 ID=Gchil1990.t1|Name=Gchil1990.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=151bp
MGCASSKDEQRTTVAELPQWHGHIRSPRPWRLEPAISSEHLVRLRKEFWE
TRVEGRSEMWQALRFAAESESDELREETVKAAGLRPANRRCTMQTMFDEL
GALYEIPMYALIDPLNLDEQPVHKEFKDAAKAVTDYVNADEKSKRMPRTL
*
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mRNA from alignment at tig00004439_pilon:1576427..1576955-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1990.t1 ID=Gchil1990.t1|Name=Gchil1990.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=529bp|location=Sequence derived from alignment at tig00004439_pilon:1576427..1576955- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGTGTGCTTCGTCGAAGGATGAGCAGCGGACGACTGTCGCAGAACT
CCCGCAGTGGCATGGTCATATTCGATCACCACGGCCATGGAGACTTGAGC
CCGCAATCTCGTCGGAGCATCTTGTACGGCTGCGGAAAGAATTCTGGGAA
ACTAGAGTCGAGGGGCGTTCGGAAATGTGGCAAGCTCTTCGTTTTGCAGC
CGAGTCCGAGTCCGTAAGTTCTCGAAATCTAAACGTCCACCACTTTTACA
CATGTTTCTTACTTGTTATGAGTGCTGTTTCTACCACAGGATGAGTTGAG
GGAGGAGACCGTCAAGGCGGCTGGATTGAGACCAGCCAATCGCCGCTGCA
CGATGCAAACCATGTTTGATGAATTGGGCGCCTTGTACGAGATTCCTATG
TATGCTCTTATCGATCCCTTAAATTTGGACGAACAACCTGTGCACAAGGA
ATTCAAGGATGCTGCCAAAGCTGTAACCGATTATGTCAATGCGGACGAAA
AGTCGAAGCGGATGCCTAGAACGTTGTGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1576427..1576955-

>Gchil1990.t1 ID=Gchil1990.t1|Name=Gchil1990.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=453bp|location=Sequence derived from alignment at tig00004439_pilon:1576427..1576955- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGTGTGCTTCGTCGAAGGATGAGCAGCGGACGACTGTCGCAGAACT
CCCGCAGTGGCATGGTCATATTCGATCACCACGGCCATGGAGACTTGAGC
CCGCAATCTCGTCGGAGCATCTTGTACGGCTGCGGAAAGAATTCTGGGAA
ACTAGAGTCGAGGGGCGTTCGGAAATGTGGCAAGCTCTTCGTTTTGCAGC
CGAGTCCGAGTCCGATGAGTTGAGGGAGGAGACCGTCAAGGCGGCTGGAT
TGAGACCAGCCAATCGCCGCTGCACGATGCAAACCATGTTTGATGAATTG
GGCGCCTTGTACGAGATTCCTATGTATGCTCTTATCGATCCCTTAAATTT
GGACGAACAACCTGTGCACAAGGAATTCAAGGATGCTGCCAAAGCTGTAA
CCGATTATGTCAATGCGGACGAAAAGTCGAAGCGGATGCCTAGAACGTTG
TGA
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