Gchil1977.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1977.t1
Unique NameGchil1977.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length354
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1433738..1434993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.A0A090MDD8
Max annot lvl2759|Eukaryota
Evalue4.64e-39
EggNOG OGs2C1MM@1|root,2S2PZ@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1977Gchil1977Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1433738..1434993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1977.t1Gchil1977.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1433738..1434993 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1977.t1.stop1Gchil1977.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1433738..1433740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1977.t1.CDS1Gchil1977.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1433738..1434067 -
Gchil1977.t1.CDS2Gchil1977.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1434163..1434453 -
Gchil1977.t1.CDS3Gchil1977.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1434553..1434993 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1977.t1.exon1Gchil1977.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1433738..1434067 -
Gchil1977.t1.exon2Gchil1977.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1434163..1434453 -
Gchil1977.t1.exon3Gchil1977.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1434553..1434993 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1977.t1.intron1Gchil1977.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1434068..1434162 -
Gchil1977.t1.intron2Gchil1977.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1434454..1434552 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1977.t1.start1Gchil1977.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1434991..1434993 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1977.t1 ID=Gchil1977.t1|Name=Gchil1977.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=354bp
METLETLRQRATAARQSFARVPPTSRRAPHASASSQSQSSSSSSSSSSPP
PSALLQLASVVHTVARVSDALVSTGVSAWRVAQPYQPQVWLPLIYALFLL
LFGGEFVTVVASIEATRRFGWHRIRLAFTALYYELQSARRALNNDNQLDD
NADGVEDVKQLAASELAVRRLAVLSASVNPDNVSAALEGLAMAMVAITAT
LRVRFAAAITLGSAIGDVLCAMLSPFSSALLRLWLAEPQEKWISVVNRYA
FRYAGMCLSWALARAVSSVLCATRGSAMLVSAAVQYGVRRGMMDAATASA
ARYATVGAWALLAALGLYAQLLGSVGSRFPFNVLLAPVWVAELALVLVVG
RAR*
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spliced messenger RNA

>Gchil1977.t1 ID=Gchil1977.t1|Name=Gchil1977.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00004439_pilon:1433738..1434993- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACGCTCGAGACGCTTCGCCAACGTGCCACCGCCGCGCGACAGTC
CTTCGCGCGCGTGCCTCCTACGTCACGCCGCGCGCCGCACGCGTCAGCCT
CATCGCAGTCGCAGTCGTCGTCGTCGTCGTCGTCATCGTCGTCGCCGCCG
CCATCCGCGCTACTGCAACTGGCGTCGGTGGTGCACACGGTCGCGCGCGT
GTCGGACGCGTTGGTGAGCACGGGCGTCAGCGCGTGGCGCGTGGCGCAGC
CTTACCAGCCGCAAGTGTGGCTACCGCTGATCTACGCGCTATTTCTTCTA
CTGTTCGGCGGCGAGTTTGTCACCGTGGTGGCGTCCATCGAGGCCACGCG
CCGCTTTGGCTGGCATCGCATCCGACTGGCCTTCACCGCGCTCTACTACG
AGCTGCAAAGCGCACGACGCGCGCTGAACAACGACAACCAGCTCGATGAC
AACGCGGACGGCGTGGAGGACGTCAAGCAGCTGGCAGCGTCCGAGCTGGC
CGTGCGGCGGCTCGCGGTGCTGAGCGCGTCGGTGAACCCCGACAACGTGT
CGGCGGCGCTGGAGGGTCTGGCCATGGCCATGGTGGCCATCACGGCCACG
CTCAGGGTGCGCTTCGCGGCGGCCATCACGCTGGGATCGGCCATCGGCGA
CGTGCTGTGTGCCATGTTGTCACCGTTTTCTAGCGCCTTGTTGCGCCTAT
GGCTGGCCGAGCCGCAAGAAAAATGGATATCGGTTGTCAACAGGTACGCG
TTTCGGTATGCTGGAATGTGTCTCAGCTGGGCGCTGGCGCGCGCGGTGAG
CAGCGTGTTGTGTGCCACGCGCGGCAGCGCCATGTTGGTGTCGGCGGCGG
TGCAGTACGGCGTGCGACGCGGCATGATGGACGCGGCGACGGCGAGCGCG
GCGCGCTACGCGACGGTGGGCGCGTGGGCCTTGCTCGCGGCGCTGGGACT
GTACGCGCAGCTGTTAGGCTCGGTGGGCTCGCGTTTCCCGTTCAACGTGC
TGCTAGCGCCCGTGTGGGTTGCCGAGCTGGCGCTTGTGCTCGTGGTGGGG
CGCGCGCGCTGA
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protein sequence of Gchil1977.t1

>Gchil1977.t1 ID=Gchil1977.t1|Name=Gchil1977.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=354bp
METLETLRQRATAARQSFARVPPTSRRAPHASASSQSQSSSSSSSSSSPP
PSALLQLASVVHTVARVSDALVSTGVSAWRVAQPYQPQVWLPLIYALFLL
LFGGEFVTVVASIEATRRFGWHRIRLAFTALYYELQSARRALNNDNQLDD
NADGVEDVKQLAASELAVRRLAVLSASVNPDNVSAALEGLAMAMVAITAT
LRVRFAAAITLGSAIGDVLCAMLSPFSSALLRLWLAEPQEKWISVVNRYA
FRYAGMCLSWALARAVSSVLCATRGSAMLVSAAVQYGVRRGMMDAATASA
ARYATVGAWALLAALGLYAQLLGSVGSRFPFNVLLAPVWVAELALVLVVG
RAR*
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mRNA from alignment at tig00004439_pilon:1433738..1434993-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1977.t1 ID=Gchil1977.t1|Name=Gchil1977.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1256bp|location=Sequence derived from alignment at tig00004439_pilon:1433738..1434993- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAACGCTCGAGACGCTTCGCCAACGTGCCACCGCCGCGCGACAGTC
CTTCGCGCGCGTGCCTCCTACGTCACGCCGCGCGCCGCACGCGTCAGCCT
CATCGCAGTCGCAGTCGTCGTCGTCGTCGTCGTCATCGTCGTCGCCGCCG
CCATCCGCGCTACTGCAACTGGCGTCGGTGGTGCACACGGTCGCGCGCGT
GTCGGACGCGTTGGTGAGCACGGGCGTCAGCGCGTGGCGCGTGGCGCAGC
CTTACCAGCCGCAAGTGTGGCTACCGCTGATCTACGCGCTATTTCTTCTA
CTGTTCGGCGGCGAGTTTGTCACCGTGGTGGCGTCCATCGAGGCCACGCG
CCGCTTTGGCTGGCATCGCATCCGACTGGCCTTCACCGCGCTCTACTACG
AGCTGCAAAGCGCACGACGCGCGCTGAACAACGACAACCAGGTACGTGCT
CTGCGTGTTGGGCGCGAAGCGAATCTGTTTCTCTTTTCCATGGCGTGTGC
GCTGACTTTTTTTTGGAGCTCGCGCGTGTGGACTGTGTAGCTCGATGACA
ACGCGGACGGCGTGGAGGACGTCAAGCAGCTGGCAGCGTCCGAGCTGGCC
GTGCGGCGGCTCGCGGTGCTGAGCGCGTCGGTGAACCCCGACAACGTGTC
GGCGGCGCTGGAGGGTCTGGCCATGGCCATGGTGGCCATCACGGCCACGC
TCAGGGTGCGCTTCGCGGCGGCCATCACGCTGGGATCGGCCATCGGCGAC
GTGCTGTGTGCCATGTTGTCACCGTTTTCTAGCGCCTTGTTGCGCCTATG
GCTGGCCGAGCCGCAAGAAAAATGGATATCGGTACGTGATACTCGCAGCA
GCACAGCACAGGCAATGTTTAATGTGAACTACAACTAACGAGCGCAAGAG
TTTTGACGCGCGCACAATGACCAAAGGTTGTCAACAGGTACGCGTTTCGG
TATGCTGGAATGTGTCTCAGCTGGGCGCTGGCGCGCGCGGTGAGCAGCGT
GTTGTGTGCCACGCGCGGCAGCGCCATGTTGGTGTCGGCGGCGGTGCAGT
ACGGCGTGCGACGCGGCATGATGGACGCGGCGACGGCGAGCGCGGCGCGC
TACGCGACGGTGGGCGCGTGGGCCTTGCTCGCGGCGCTGGGACTGTACGC
GCAGCTGTTAGGCTCGGTGGGCTCGCGTTTCCCGTTCAACGTGCTGCTAG
CGCCCGTGTGGGTTGCCGAGCTGGCGCTTGTGCTCGTGGTGGGGCGCGCG
CGCTGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1433738..1434993-

>Gchil1977.t1 ID=Gchil1977.t1|Name=Gchil1977.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1062bp|location=Sequence derived from alignment at tig00004439_pilon:1433738..1434993- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAACGCTCGAGACGCTTCGCCAACGTGCCACCGCCGCGCGACAGTC
CTTCGCGCGCGTGCCTCCTACGTCACGCCGCGCGCCGCACGCGTCAGCCT
CATCGCAGTCGCAGTCGTCGTCGTCGTCGTCGTCATCGTCGTCGCCGCCG
CCATCCGCGCTACTGCAACTGGCGTCGGTGGTGCACACGGTCGCGCGCGT
GTCGGACGCGTTGGTGAGCACGGGCGTCAGCGCGTGGCGCGTGGCGCAGC
CTTACCAGCCGCAAGTGTGGCTACCGCTGATCTACGCGCTATTTCTTCTA
CTGTTCGGCGGCGAGTTTGTCACCGTGGTGGCGTCCATCGAGGCCACGCG
CCGCTTTGGCTGGCATCGCATCCGACTGGCCTTCACCGCGCTCTACTACG
AGCTGCAAAGCGCACGACGCGCGCTGAACAACGACAACCAGCTCGATGAC
AACGCGGACGGCGTGGAGGACGTCAAGCAGCTGGCAGCGTCCGAGCTGGC
CGTGCGGCGGCTCGCGGTGCTGAGCGCGTCGGTGAACCCCGACAACGTGT
CGGCGGCGCTGGAGGGTCTGGCCATGGCCATGGTGGCCATCACGGCCACG
CTCAGGGTGCGCTTCGCGGCGGCCATCACGCTGGGATCGGCCATCGGCGA
CGTGCTGTGTGCCATGTTGTCACCGTTTTCTAGCGCCTTGTTGCGCCTAT
GGCTGGCCGAGCCGCAAGAAAAATGGATATCGGTTGTCAACAGGTACGCG
TTTCGGTATGCTGGAATGTGTCTCAGCTGGGCGCTGGCGCGCGCGGTGAG
CAGCGTGTTGTGTGCCACGCGCGGCAGCGCCATGTTGGTGTCGGCGGCGG
TGCAGTACGGCGTGCGACGCGGCATGATGGACGCGGCGACGGCGAGCGCG
GCGCGCTACGCGACGGTGGGCGCGTGGGCCTTGCTCGCGGCGCTGGGACT
GTACGCGCAGCTGTTAGGCTCGGTGGGCTCGCGTTTCCCGTTCAACGTGC
TGCTAGCGCCCGTGTGGGTTGCCGAGCTGGCGCTTGTGCTCGTGGTGGGG
CGCGCGCGCTGA
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