Gchil1976.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1976.t1
Unique NameGchil1976.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length79
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1433394..1433726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog218851.Aquca_038_00112.1
PFAMsCyt-b5
Max annot lvl35493|Streptophyta
KEGG koko:K00326
KEGG ReactionR00100
KEGG Pathwayko00520,map00520
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007275,GO:0008150,GO:0009653,GO:0009791,GO:0010015,GO:0010101,GO:0010102,GO:0010311,GO:0022622,GO:0032501,GO:0032502,GO:0044424,GO:0044444,GO:0044464,GO:0048364,GO:0048527,GO:0048528,GO:0048646,GO:0048731,GO:0048856,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:1905392,GO:1905393
Evalue3.33e-18
EggNOG OGsCOG5274@1|root,KOG0536@2759|Eukaryota,37I8R@33090|Viridiplantae,3GGR5@35493|Streptophyta
EC1.6.2.2
DescriptionBelongs to the cytochrome b5 family
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1976Gchil1976Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1433394..1433726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1976.t1Gchil1976.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1433394..1433726 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1976.t1.start1Gchil1976.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1433394..1433396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1976.t1.CDS1Gchil1976.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1433394..1433489 +
Gchil1976.t1.CDS2Gchil1976.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1433586..1433726 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1976.t1.exon1Gchil1976.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1433394..1433489 +
Gchil1976.t1.exon2Gchil1976.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1433586..1433726 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1976.t1.intron1Gchil1976.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1433490..1433585 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1976.t1.stop1Gchil1976.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1433724..1433726 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1976.t1 ID=Gchil1976.t1|Name=Gchil1976.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=79bp
MWVALRGAVFDVTRYARFHPGGHAILLAAAGTDVTELFNRYHPWVNADFM
LAHCYLGALVDEENDGDGDGDAQAESAQ*
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spliced messenger RNA

>Gchil1976.t1 ID=Gchil1976.t1|Name=Gchil1976.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=237bp|location=Sequence derived from alignment at tig00004439_pilon:1433394..1433726+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGTGGCGTTGCGCGGCGCTGTGTTTGATGTGACGCGCTATGCGCG
CTTCCACCCCGGCGGCCACGCCATTCTGCTCGCCGCCGCCGGCACCGATG
TCACCGAGCTGTTCAATCGCTATCACCCGTGGGTCAATGCGGACTTTATG
CTGGCACACTGCTACCTGGGCGCGCTcgtcgatgaagaaaacgacggcga
cggcgacggcgacgcgcaggcgGAAAGCGCCCAATAG
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protein sequence of Gchil1976.t1

>Gchil1976.t1 ID=Gchil1976.t1|Name=Gchil1976.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=79bp
MWVALRGAVFDVTRYARFHPGGHAILLAAAGTDVTELFNRYHPWVNADFM
LAHCYLGALVDEENDGDGDGDAQAESAQ*
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mRNA from alignment at tig00004439_pilon:1433394..1433726+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1976.t1 ID=Gchil1976.t1|Name=Gchil1976.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=333bp|location=Sequence derived from alignment at tig00004439_pilon:1433394..1433726+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGGTGGCGTTGCGCGGCGCTGTGTTTGATGTGACGCGCTATGCGCG
CTTCCACCCCGGCGGCCACGCCATTCTGCTCGCCGCCGCCGGCACCGTAC
GTCAGCGCTGTTTGCTTGTTGCGCTTGCTGCTCCGTTTCTCACTCGCGCT
tgtgtgtgtgtgtgtgtgtgtgtttgCTGCGCGCGCGCTCAGGATGTCAC
CGAGCTGTTCAATCGCTATCACCCGTGGGTCAATGCGGACTTTATGCTGG
CACACTGCTACCTGGGCGCGCTcgtcgatgaagaaaacgacggcgacggc
gacggcgacgcgcaggcgGAAAGCGCCCAATAG
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Coding sequence (CDS) from alignment at tig00004439_pilon:1433394..1433726+

>Gchil1976.t1 ID=Gchil1976.t1|Name=Gchil1976.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=237bp|location=Sequence derived from alignment at tig00004439_pilon:1433394..1433726+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGGGTGGCGTTGCGCGGCGCTGTGTTTGATGTGACGCGCTATGCGCG
CTTCCACCCCGGCGGCCACGCCATTCTGCTCGCCGCCGCCGGCACCGATG
TCACCGAGCTGTTCAATCGCTATCACCCGTGGGTCAATGCGGACTTTATG
CTGGCACACTGCTACCTGGGCGCGCTcgtcgatgaagaaaacgacggcga
cggcgacggcgacgcgcaggcgGAAAGCGCCCAATAG
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