Gchil1965.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1965.t1
Unique NameGchil1965.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1301110..1302523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5017.XP_007706711.1
Preferred nameDIC1
PFAMsMito_carr
Max annot lvl4751|Fungi
KEGG koko:K13577
KEGG TC2.A.29.2.2,2.A.29.2.3,2.A.29.2.7
KEGG Pathwayko04964,map04964
GOsGO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0006835,GO:0006839,GO:0006855,GO:0008150,GO:0008272,GO:0008509,GO:0008514,GO:0015075,GO:0015103,GO:0015116,GO:0015117,GO:0015131,GO:0015140,GO:0015141,GO:0015238,GO:0015291,GO:0015297,GO:0015318,GO:0015556,GO:0015698,GO:0015709,GO:0015711,GO:0015729,GO:0015740,GO:0015743,GO:0015744,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0035435,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071422,GO:0071423,GO:0071702,GO:0072348,GO:0098656,GO:0098660,GO:0098661,GO:1901682,GO:1902356,GO:1902358,GO:1903825,GO:1905039
Evalue5.38e-61
EggNOG OGsKOG0759@1|root,KOG0759@2759|Eukaryota,38GSC@33154|Opisthokonta,3NUAB@4751|Fungi,3QM68@4890|Ascomycota,200RE@147541|Dothideomycetes,4KDG0@92860|Pleosporales
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
COG categoryC
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1965Gchil1965Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1301110..1302523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1965.t1Gchil1965.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1301110..1302523 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1965.t1.start1Gchil1965.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1301110..1301112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1965.t1.CDS1Gchil1965.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1301110..1301217 +
Gchil1965.t1.CDS2Gchil1965.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1301305..1301416 +
Gchil1965.t1.CDS3Gchil1965.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1301488..1301787 +
Gchil1965.t1.CDS4Gchil1965.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1301864..1302062 +
Gchil1965.t1.CDS5Gchil1965.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1302217..1302523 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1965.t1.exon1Gchil1965.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1301110..1301217 +
Gchil1965.t1.exon2Gchil1965.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1301305..1301416 +
Gchil1965.t1.exon3Gchil1965.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1301488..1301787 +
Gchil1965.t1.exon4Gchil1965.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1301864..1302062 +
Gchil1965.t1.exon5Gchil1965.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1302217..1302523 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1965.t1.intron1Gchil1965.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1301218..1301304 +
Gchil1965.t1.intron2Gchil1965.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1301417..1301487 +
Gchil1965.t1.intron3Gchil1965.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1301788..1301863 +
Gchil1965.t1.intron4Gchil1965.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1302063..1302216 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1965.t1.stop1Gchil1965.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1302521..1302523 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1965.t1 ID=Gchil1965.t1|Name=Gchil1965.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=342bp
MLPDHQKMSFVLCSNAHFHLAEIRANTPNHQRRNTQAEDGFPIAKYQRSV
SPSEHKKHPIYQQLALGGFSCAIATTFTHPIDTVKLRIQLQGSLSGTEHR
YHGLVSGLHRVARDEGMFALYNGLSPAILRAATYSASRLGLYEPLRMFLT
ETLGNDQPTFGTKVAAAVSSGSIGAFVGNPCELIKVRMQQADIYQYKHVG
DGIVRITREEGFTALWNGTMPAALRAALLTSSQLATYDHCKTLLKKYTGM
EEGLKAHFGAAMTAGLVTTSVSTPADVVKSVVMHSKPRMSPMECARLIFR
TEGMRGFLRGWTANYARLGPHTLITVLTYENLRTALGWNNL*
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spliced messenger RNA

>Gchil1965.t1 ID=Gchil1965.t1|Name=Gchil1965.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00004439_pilon:1301110..1302523+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCCGACCACCAGAAGATGTCGTTTGTCCTGTGTTCAAATGCTCA
TTTTCATTTGGCCGAAATACGCGCAAACACACCCAACCACCAACGGCGCA
ACACACAGGCGGAGGATGGGTTTCCTATCGCAAAGTACCAACGATCGGTG
TCTCCATCAGAGCACAAGAAACATCCAATATATCAACAATTGGCTTTGGG
AGGCTTTTCCTGTGCAATTGCCACCACTTTCACCCACCCAATTGATACCG
TAAAGCTCCGTATCCAGCTTCAAGGATCACTTTCCGGTACGGAGCACCGT
TACCATGGTTTAGTGTCTGGCTTGCATCGCGTGGCACGGGACGAAGGCAT
GTTTGCCCTTTACAATGGACTATCGCCGGCTATACTACGAGCAGCAACTT
ATAGTGCATCACGACTTGGTCTGTATGAACCGCTGAGGATGTTTTTGACT
GAGACTTTGGGGAATGATCAACCTACATTTGGCACGAAAGTCGCAGCTGC
CGTCTCTTCTGGTTCAATTGGCGCTTTTGTTGGTAATCCATGTGAACTAA
TAAAAGTTCGTATGCAACAAGCGGATATCTATCAGTACAAACATGTCGGA
GATGGGATCGTACGGATCACTAGAGAAGAGGGTTTTACAGCATTATGGAA
CGGGACCATGCCTGCAGCCTTGCGAGCCGCATTGCTAACCTCGTCCCAAC
TTGCGACTTACGATCATTGCAAAACGCTACTAAAGAAGTACACAGGAATG
GAGGAAGGCCTCAAGGCTCACTTTGGAGCGGCGATGACCGCAGGACTTGT
CACAACATCTGTATCAACCCCTGCTGATGTTGTAAAATCTGTCGTGATGC
ACTCGAAACCCCGTATGTCTCCAATGGAATGTGCTCGCCTGATATTTCGC
ACGGAAGGAATGCGGGGTTTTTTGCGCGGCTGGACGGCTAACTACGCTCG
GCTTGGGCCACATACCCTGATCACGGTTTTAACTTATGAGAATCTGAGAA
CAGCCTTGGGTTGGAATAACTTATAG
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protein sequence of Gchil1965.t1

>Gchil1965.t1 ID=Gchil1965.t1|Name=Gchil1965.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=342bp
MLPDHQKMSFVLCSNAHFHLAEIRANTPNHQRRNTQAEDGFPIAKYQRSV
SPSEHKKHPIYQQLALGGFSCAIATTFTHPIDTVKLRIQLQGSLSGTEHR
YHGLVSGLHRVARDEGMFALYNGLSPAILRAATYSASRLGLYEPLRMFLT
ETLGNDQPTFGTKVAAAVSSGSIGAFVGNPCELIKVRMQQADIYQYKHVG
DGIVRITREEGFTALWNGTMPAALRAALLTSSQLATYDHCKTLLKKYTGM
EEGLKAHFGAAMTAGLVTTSVSTPADVVKSVVMHSKPRMSPMECARLIFR
TEGMRGFLRGWTANYARLGPHTLITVLTYENLRTALGWNNL*
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mRNA from alignment at tig00004439_pilon:1301110..1302523+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1965.t1 ID=Gchil1965.t1|Name=Gchil1965.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1414bp|location=Sequence derived from alignment at tig00004439_pilon:1301110..1302523+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCCCGACCACCAGAAGATGTCGTTTGTCCTGTGTTCAAATGCTCA
TTTTCATTTGGCCGAAATACGCGCAAACACACCCAACCACCAACGGCGCA
ACACACAGGTATGTGCTCCTGTTTCAATCGCGTGCAGTAATCAAAGCTTT
CTCGAACCTTTCTGCTGTTTAACCATGACGAGTACTACGGATAAGGCGGA
GGATGGGTTTCCTATCGCAAAGTACCAACGATCGGTGTCTCCATCAGAGC
ACAAGAAACATCCAATATATCAACAATTGGCTTTGGGAGGCTTTTCCTGT
GCAATTGGTATGTTTCAACATCGTATATTTTCTTTCTTTAAGGGAGGTGA
CCGCTAACTGTAGGAGAATTGTCACCAGCCACCACTTTCACCCACCCAAT
TGATACCGTAAAGCTCCGTATCCAGCTTCAAGGATCACTTTCCGGTACGG
AGCACCGTTACCATGGTTTAGTGTCTGGCTTGCATCGCGTGGCACGGGAC
GAAGGCATGTTTGCCCTTTACAATGGACTATCGCCGGCTATACTACGAGC
AGCAACTTATAGTGCATCACGACTTGGTCTGTATGAACCGCTGAGGATGT
TTTTGACTGAGACTTTGGGGAATGATCAACCTACATTTGGCACGAAAGTC
GCAGCTGCCGTCTCTTCTGGTTCAATTGGTACGTGATAGGAATTGTATAT
GTTTTCATCAGCAACGACGCTTTCTAACATGTTAGTTGCGTTTTCGTTAT
GCAGGCGCTTTTGTTGGTAATCCATGTGAACTAATAAAAGTTCGTATGCA
ACAAGCGGATATCTATCAGTACAAACATGTCGGAGATGGGATCGTACGGA
TCACTAGAGAAGAGGGTTTTACAGCATTATGGAACGGGACCATGCCTGCA
GCCTTGCGAGCCGCATTGCTAACCTCGTCCCAACTTGCGACTTACGATCA
TTGGTAAGTTCCGTTACATAGATCGTGATTGATCTTAAGGCGTGAATTGC
GAAACCACAGATGAGCCACGAAGGACTTGCATCTAACGTCAAAGATATTT
CTATTTGGGGTTGTTAAAAATCATGGCACCACTTGCGATGCGAATCTATT
CATGAAGCAAAACGCTACTAAAGAAGTACACAGGAATGGAGGAAGGCCTC
AAGGCTCACTTTGGAGCGGCGATGACCGCAGGACTTGTCACAACATCTGT
ATCAACCCCTGCTGATGTTGTAAAATCTGTCGTGATGCACTCGAAACCCC
GTATGTCTCCAATGGAATGTGCTCGCCTGATATTTCGCACGGAAGGAATG
CGGGGTTTTTTGCGCGGCTGGACGGCTAACTACGCTCGGCTTGGGCCACA
TACCCTGATCACGGTTTTAACTTATGAGAATCTGAGAACAGCCTTGGGTT
GGAATAACTTATAG
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Coding sequence (CDS) from alignment at tig00004439_pilon:1301110..1302523+

>Gchil1965.t1 ID=Gchil1965.t1|Name=Gchil1965.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00004439_pilon:1301110..1302523+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCCCGACCACCAGAAGATGTCGTTTGTCCTGTGTTCAAATGCTCA
TTTTCATTTGGCCGAAATACGCGCAAACACACCCAACCACCAACGGCGCA
ACACACAGGCGGAGGATGGGTTTCCTATCGCAAAGTACCAACGATCGGTG
TCTCCATCAGAGCACAAGAAACATCCAATATATCAACAATTGGCTTTGGG
AGGCTTTTCCTGTGCAATTGCCACCACTTTCACCCACCCAATTGATACCG
TAAAGCTCCGTATCCAGCTTCAAGGATCACTTTCCGGTACGGAGCACCGT
TACCATGGTTTAGTGTCTGGCTTGCATCGCGTGGCACGGGACGAAGGCAT
GTTTGCCCTTTACAATGGACTATCGCCGGCTATACTACGAGCAGCAACTT
ATAGTGCATCACGACTTGGTCTGTATGAACCGCTGAGGATGTTTTTGACT
GAGACTTTGGGGAATGATCAACCTACATTTGGCACGAAAGTCGCAGCTGC
CGTCTCTTCTGGTTCAATTGGCGCTTTTGTTGGTAATCCATGTGAACTAA
TAAAAGTTCGTATGCAACAAGCGGATATCTATCAGTACAAACATGTCGGA
GATGGGATCGTACGGATCACTAGAGAAGAGGGTTTTACAGCATTATGGAA
CGGGACCATGCCTGCAGCCTTGCGAGCCGCATTGCTAACCTCGTCCCAAC
TTGCGACTTACGATCATTGCAAAACGCTACTAAAGAAGTACACAGGAATG
GAGGAAGGCCTCAAGGCTCACTTTGGAGCGGCGATGACCGCAGGACTTGT
CACAACATCTGTATCAACCCCTGCTGATGTTGTAAAATCTGTCGTGATGC
ACTCGAAACCCCGTATGTCTCCAATGGAATGTGCTCGCCTGATATTTCGC
ACGGAAGGAATGCGGGGTTTTTTGCGCGGCTGGACGGCTAACTACGCTCG
GCTTGGGCCACATACCCTGATCACGGTTTTAACTTATGAGAATCTGAGAA
CAGCCTTGGGTTGGAATAACTTATAG
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