Gchil1964.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1964.t1
Unique NameGchil1964.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1299090..1300080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO310CT
Preferred nameRPL7
PFAMsRibosomal_L30,Ribosomal_L30_N
Max annot lvl2759|Eukaryota
KEGG koko:K02937,ko:K08819,ko:K19933
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000172,GO:0000184,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0001889,GO:0002165,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008033,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009791,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030312,GO:0030490,GO:0030684,GO:0030687,GO:0031090,GO:0031099,GO:0031100,GO:0031672,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035073,GO:0035210,GO:0042254,GO:0042273,GO:0042274,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097421,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1905267,GO:1990904
Evalue7.31e-105
EggNOG OGsCOG1841@1|root,KOG3184@2759|Eukaryota
EC2.7.11.22,2.7.11.23
Descriptionmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1964Gchil1964Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1299090..1300080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1964.t1Gchil1964.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1299090..1300080 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1964.t1.start1Gchil1964.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1299090..1299092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1964.t1.CDS1Gchil1964.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1299090..1299106 +
Gchil1964.t1.CDS2Gchil1964.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1299348..1300080 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1964.t1.exon1Gchil1964.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1299090..1299106 +
Gchil1964.t1.exon2Gchil1964.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1299348..1300080 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1964.t1.intron1Gchil1964.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1299107..1299347 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1964.t1.stop1Gchil1964.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1300078..1300080 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1964.t1 ID=Gchil1964.t1|Name=Gchil1964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=250bp
MVAKTDIPVPESILKKRRTQDRVAGERLIAAQAAKKARREAKKEAFKRAE
TYAAEYKASERAIIDSKRSARKEGKFYVPDGAKVAFVIRIRGINSMPPKE
KKILQLLRLRQIQNGVFVKLNYATIRMLQRVEPYITYGYPNLKSVKELIY
KRGFAKIGKPGSWSRIPLSDNRIIEQVLGKHDIICMEDLVHEIFTCGPHF
KEANNFLWPFKLSSPRGGYSKKSKLIHFAEGGDSGNREDLINPLIRRMN*
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spliced messenger RNA

>Gchil1964.t1 ID=Gchil1964.t1|Name=Gchil1964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00004439_pilon:1299090..1300080+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCAAGACTGACATTCCGGTGCCTGAGAGCATCTTAAAGAAGCG
CCGCACGCAAGACCGTGTTGCCGGTGAACGTCTTATTGCCGCACAGGCCG
CGAAGAAGGCCCGCCGTGAGGCCAAGAAAGAGGCCTTCAAGCGAGCTGAA
ACGTACGCCGCTGAATACAAGGCATCTGAGCGCGCGATAATTGATTCCAA
GCGATCTGCTCGTAAGGAAGGCAAGTTCTACGTCCCGGACGGTGCTAAGG
TCGCTTTTGTTATCCGCATTCGTGGTATCAATTCTATGCCACCGAAGGAA
AAGAAGATTCTCCAACTTCTGCGCCTTCGTCAAATTCAAAACGGCGTTTT
TGTGAAGCTCAACTACGCTACCATTCGCATGTTGCAGAGGGTTGAGCCAT
ACATCACGTATGGTTATCCGAATCTGAAGAGTGTGAAGGAACTTATCTAC
AAGAGAGGGTTTGCAAAGATCGGAAAGCCGGGGTCTTGGTCTCGCATTCC
ATTGTCGGACAATAGAATTATTGAGCAGGTTTTGGGAAAGCACGATATTA
TTTGTATGGAGGATTTGGTCCATGAGATCTTCACTTGTGGCCCGCACTTT
AAGGAGGCCAATAACTTCTTGTGGCCTTTCAAGCTCTCGTCGCCCCGTGG
TGGTTATTCAAAGAAATCCAAACTGATCCACTTTGCTGAAGGCGGTGATT
CTGGTAACCGGGAAGATCTGATCAACCCACTTATTCGAAGAATGAACTAA
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protein sequence of Gchil1964.t1

>Gchil1964.t1 ID=Gchil1964.t1|Name=Gchil1964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=250bp
MVAKTDIPVPESILKKRRTQDRVAGERLIAAQAAKKARREAKKEAFKRAE
TYAAEYKASERAIIDSKRSARKEGKFYVPDGAKVAFVIRIRGINSMPPKE
KKILQLLRLRQIQNGVFVKLNYATIRMLQRVEPYITYGYPNLKSVKELIY
KRGFAKIGKPGSWSRIPLSDNRIIEQVLGKHDIICMEDLVHEIFTCGPHF
KEANNFLWPFKLSSPRGGYSKKSKLIHFAEGGDSGNREDLINPLIRRMN*
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mRNA from alignment at tig00004439_pilon:1299090..1300080+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1964.t1 ID=Gchil1964.t1|Name=Gchil1964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=991bp|location=Sequence derived from alignment at tig00004439_pilon:1299090..1300080+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGCCAAGACTGAGTAAGTAATCGCCCATCTCCGACGCGATCCTCT
CGTTCTCGCACCCTTCAGTTCCCATTAGGCCATTTCGGTGAGCCTGGTTC
ACAAAGCGTAGAGCATCGAAATTAGATGTCAGCTTCCTGGCTGATGTCAG
GATGTGAAAACCAGAACACATTGCCTTCATAGGCCCCAAAGTCTCCGCCT
CGAACACAGTACTAACTCCGCTTGCCTGCCCATTTGCTCCGCCATTTGTT
CACCACAGCATTCCGGTGCCTGAGAGCATCTTAAAGAAGCGCCGCACGCA
AGACCGTGTTGCCGGTGAACGTCTTATTGCCGCACAGGCCGCGAAGAAGG
CCCGCCGTGAGGCCAAGAAAGAGGCCTTCAAGCGAGCTGAAACGTACGCC
GCTGAATACAAGGCATCTGAGCGCGCGATAATTGATTCCAAGCGATCTGC
TCGTAAGGAAGGCAAGTTCTACGTCCCGGACGGTGCTAAGGTCGCTTTTG
TTATCCGCATTCGTGGTATCAATTCTATGCCACCGAAGGAAAAGAAGATT
CTCCAACTTCTGCGCCTTCGTCAAATTCAAAACGGCGTTTTTGTGAAGCT
CAACTACGCTACCATTCGCATGTTGCAGAGGGTTGAGCCATACATCACGT
ATGGTTATCCGAATCTGAAGAGTGTGAAGGAACTTATCTACAAGAGAGGG
TTTGCAAAGATCGGAAAGCCGGGGTCTTGGTCTCGCATTCCATTGTCGGA
CAATAGAATTATTGAGCAGGTTTTGGGAAAGCACGATATTATTTGTATGG
AGGATTTGGTCCATGAGATCTTCACTTGTGGCCCGCACTTTAAGGAGGCC
AATAACTTCTTGTGGCCTTTCAAGCTCTCGTCGCCCCGTGGTGGTTATTC
AAAGAAATCCAAACTGATCCACTTTGCTGAAGGCGGTGATTCTGGTAACC
GGGAAGATCTGATCAACCCACTTATTCGAAGAATGAACTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1299090..1300080+

>Gchil1964.t1 ID=Gchil1964.t1|Name=Gchil1964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=750bp|location=Sequence derived from alignment at tig00004439_pilon:1299090..1300080+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGCCAAGACTGACATTCCGGTGCCTGAGAGCATCTTAAAGAAGCG
CCGCACGCAAGACCGTGTTGCCGGTGAACGTCTTATTGCCGCACAGGCCG
CGAAGAAGGCCCGCCGTGAGGCCAAGAAAGAGGCCTTCAAGCGAGCTGAA
ACGTACGCCGCTGAATACAAGGCATCTGAGCGCGCGATAATTGATTCCAA
GCGATCTGCTCGTAAGGAAGGCAAGTTCTACGTCCCGGACGGTGCTAAGG
TCGCTTTTGTTATCCGCATTCGTGGTATCAATTCTATGCCACCGAAGGAA
AAGAAGATTCTCCAACTTCTGCGCCTTCGTCAAATTCAAAACGGCGTTTT
TGTGAAGCTCAACTACGCTACCATTCGCATGTTGCAGAGGGTTGAGCCAT
ACATCACGTATGGTTATCCGAATCTGAAGAGTGTGAAGGAACTTATCTAC
AAGAGAGGGTTTGCAAAGATCGGAAAGCCGGGGTCTTGGTCTCGCATTCC
ATTGTCGGACAATAGAATTATTGAGCAGGTTTTGGGAAAGCACGATATTA
TTTGTATGGAGGATTTGGTCCATGAGATCTTCACTTGTGGCCCGCACTTT
AAGGAGGCCAATAACTTCTTGTGGCCTTTCAAGCTCTCGTCGCCCCGTGG
TGGTTATTCAAAGAAATCCAAACTGATCCACTTTGCTGAAGGCGGTGATT
CTGGTAACCGGGAAGATCTGATCAACCCACTTATTCGAAGAATGAACTAA
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