Gchil1961.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1961.t1
Unique NameGchil1961.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length103
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1292852..1293427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1961Gchil1961Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1292852..1293427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1961.t1Gchil1961.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1292852..1293427 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1961.t1.stop1Gchil1961.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1292852..1292854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1961.t1.CDS1Gchil1961.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1292852..1292946 -
Gchil1961.t1.CDS2Gchil1961.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1293052..1293209 -
Gchil1961.t1.CDS3Gchil1961.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1293372..1293427 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1961.t1.exon1Gchil1961.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1292852..1292946 -
Gchil1961.t1.exon2Gchil1961.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1293052..1293209 -
Gchil1961.t1.exon3Gchil1961.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1293372..1293427 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1961.t1.intron1Gchil1961.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1292947..1293051 -
Gchil1961.t1.intron2Gchil1961.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1293210..1293371 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1961.t1.start1Gchil1961.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1293425..1293427 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1961.t1 ID=Gchil1961.t1|Name=Gchil1961.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=103bp
MYSGTQYPETTKFIEEKRRSNREGYKLCPKVNLWWNKTSAQKRQLYHDDD
ANHVDKVVILTASVRVRRGKLDSVFPNIFRRFVRGNSLNSEHAVRFDDLR
GL*
back to top

spliced messenger RNA

>Gchil1961.t1 ID=Gchil1961.t1|Name=Gchil1961.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=309bp|location=Sequence derived from alignment at tig00004439_pilon:1292852..1293427- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACAGCGGAACCCAATATCCTGAAACTACTAAGTTTATTGAAGAAAA
AAGAAGGTCCAACCGAGAGGGCTACAAGCTCTGCCCCAAAGTGAACCTGT
GGTGGAACAAAACAAGCGCGCAGAAACGCCAGTTATATCACGACGACGAC
GCTAACCATGTGGACAAAGTAGTAATATTAACGGCGTCGGTGCGAGTGAG
AAGAGGCAAGCTAGACAGCGTCTTTCCGAACATTTTCCGCCGCTTTGTGC
GCGGAAATTCACTTAACTCCGAGCATGCTGTGCGCTTTGACGACCTGCGA
GGTCTCTGA
back to top

protein sequence of Gchil1961.t1

>Gchil1961.t1 ID=Gchil1961.t1|Name=Gchil1961.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=103bp
MYSGTQYPETTKFIEEKRRSNREGYKLCPKVNLWWNKTSAQKRQLYHDDD
ANHVDKVVILTASVRVRRGKLDSVFPNIFRRFVRGNSLNSEHAVRFDDLR
GL*
back to top

mRNA from alignment at tig00004439_pilon:1292852..1293427-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1961.t1 ID=Gchil1961.t1|Name=Gchil1961.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00004439_pilon:1292852..1293427- (Gracilaria chilensis NLEC103_M9 male)
ATGTACAGCGGAACCCAATATCCTGAAACTACTAAGTTTATTGAAGAAAA
AAGAAGGTAAGCAGATGAGTGTTGGAGGCGAGTGACCAAGACGTCCGAAT
CCAATTCAAAACTAGTTGATGACGGCGATATCGGGAGAGCAGAGCTTGTT
TGTTAGGTTCCTCACCATAGCTCTCGAACCCATCCCAACCACGGCGACTA
TTTACGCACGATCTTTAGGTCCAACCGAGAGGGCTACAAGCTCTGCCCCA
AAGTGAACCTGTGGTGGAACAAAACAAGCGCGCAGAAACGCCAGTTATAT
CACGACGACGACGCTAACCATGTGGACAAAGTAGTAATATTAACGGCGTC
GGTGCGAGTGAGAAGAGGCAAGCTAGGTTTTTCTTGCGTCTCAGGTTCTG
AGCCAAACCCAAGTTCGGGCGAGCTCCAATCCATGAAGTCTGTGTGACTG
CTATCGCTTCCCACATCGGATTCCGTGGTAGACAGCGTCTTTCCGAACAT
TTTCCGCCGCTTTGTGCGCGGAAATTCACTTAACTCCGAGCATGCTGTGC
GCTTTGACGACCTGCGAGGTCTCTGA
back to top

Coding sequence (CDS) from alignment at tig00004439_pilon:1292852..1293427-

>Gchil1961.t1 ID=Gchil1961.t1|Name=Gchil1961.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=309bp|location=Sequence derived from alignment at tig00004439_pilon:1292852..1293427- (Gracilaria chilensis NLEC103_M9 male)
ATGTACAGCGGAACCCAATATCCTGAAACTACTAAGTTTATTGAAGAAAA
AAGAAGGTCCAACCGAGAGGGCTACAAGCTCTGCCCCAAAGTGAACCTGT
GGTGGAACAAAACAAGCGCGCAGAAACGCCAGTTATATCACGACGACGAC
GCTAACCATGTGGACAAAGTAGTAATATTAACGGCGTCGGTGCGAGTGAG
AAGAGGCAAGCTAGACAGCGTCTTTCCGAACATTTTCCGCCGCTTTGTGC
GCGGAAATTCACTTAACTCCGAGCATGCTGTGCGCTTTGACGACCTGCGA
GGTCTCTGA
back to top