Gchil1960.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1960.t1
Unique NameGchil1960.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1291508..1292347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1960Gchil1960Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1291508..1292347 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1960.t1.start1Gchil1960.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1291508..1291510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1960.t1.CDS1Gchil1960.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1291508..1292347 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1960.t1.exon1Gchil1960.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1291508..1292347 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1960.t1.stop1Gchil1960.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1292345..1292347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1960.t1Gchil1960.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1291508..1292347 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1960.t1 ID=Gchil1960.t1|Name=Gchil1960.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=280bp
MQNYTPGSDKRVSATSTSSSHEKPFICHHPDCVRPFNRKTSLTNHLKAHK
NKKSRSIKRYRRAREKQLQQNLAAASQGIPHAAASFETSTNHAGPTTVPG
TLDGGCFPRDEKPPWTNFPVPGRVEPIVTEPLAPTPILPVGFGASLEDSE
SIAYSSNSMPLTDATLGVDNTAGDQMWEGDVLLGLLSSAIFPAPFESSAC
AVEGHSVPQFPAEEICRITNDVEGLNDRRERNESGRSQNVRERDAVVRNE
PTSEDGNPFLQILPLQILETGHFENHEDL*
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spliced messenger RNA

>Gchil1960.t1 ID=Gchil1960.t1|Name=Gchil1960.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00004439_pilon:1291508..1292347+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAACTACACCCCTGGCAGCGACAAGCGCGTTTCTGCAACGTCTAC
CTCCTCAAGTCACGAGAAGCCATTTATCTGTCACCATCCAGACTGTGTTC
GCCCTTTTAATAGAAAAACATCTCTGACGAACCACCTGAAGGCGCACAAA
AACAAAAAGTCAAGATCTATTAAGCGCTACCGACGCGCCAGAGAAAAGCA
GTTACAGCAGAATCTTGCTGCAGCGTCGCAAGGCATACCACATGCTGCTG
CGAGTTTCGAGACCTCCACAAATCACGCCGGCCCTACAACCGTTCCCGGC
ACGCTTGATGGGGGCTGTTTTCCGCGTGACGAGAAGCCACCATGGACTAA
TTTTCCAGTGCCGGGCCGCGTGGAACCTATTGTGACCGAACCGTTGGCAC
CGACACCTATCTTGCCCGTGGGATTTGGAGCCAGCCTGGAGGACTCGGAG
TCTATAGCATACAGTTCTAATTCTATGCCACTAACAGATGCAACACTAGG
TGTAGACAACACGGCAGGAGATCAGATGTGGGAAGGCGATGTGCTTCTTG
GACTCCTTTCGTCTGCGATTTTTCCAGCACCTTTTGAATCTTCAGCATGT
GCGGTCGAGGGGCATTCAGTTCCACAATTTCCCGCTGAAGAAATCTGTCG
GATCACAAACGACGTGGAAGGCTTGAATGACAGAAGGGAGAGAAATGAGA
GTGGACGATCTCAAAATGTGCGTGAACGAGATGCTGTGGTAAGAAATGAG
CCTACGAGCGAAGATGGAAACCCTTTTTTGCAAATTCTCCCATTGCAAAT
CTTAGAGACGGGACATTTCGAGAACCACGAGGATCTCTAG
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protein sequence of Gchil1960.t1

>Gchil1960.t1 ID=Gchil1960.t1|Name=Gchil1960.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=280bp
MQNYTPGSDKRVSATSTSSSHEKPFICHHPDCVRPFNRKTSLTNHLKAHK
NKKSRSIKRYRRAREKQLQQNLAAASQGIPHAAASFETSTNHAGPTTVPG
TLDGGCFPRDEKPPWTNFPVPGRVEPIVTEPLAPTPILPVGFGASLEDSE
SIAYSSNSMPLTDATLGVDNTAGDQMWEGDVLLGLLSSAIFPAPFESSAC
AVEGHSVPQFPAEEICRITNDVEGLNDRRERNESGRSQNVRERDAVVRNE
PTSEDGNPFLQILPLQILETGHFENHEDL*
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mRNA from alignment at tig00004439_pilon:1291508..1292347+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1960.t1 ID=Gchil1960.t1|Name=Gchil1960.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00004439_pilon:1291508..1292347+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGAACTACACCCCTGGCAGCGACAAGCGCGTTTCTGCAACGTCTAC
CTCCTCAAGTCACGAGAAGCCATTTATCTGTCACCATCCAGACTGTGTTC
GCCCTTTTAATAGAAAAACATCTCTGACGAACCACCTGAAGGCGCACAAA
AACAAAAAGTCAAGATCTATTAAGCGCTACCGACGCGCCAGAGAAAAGCA
GTTACAGCAGAATCTTGCTGCAGCGTCGCAAGGCATACCACATGCTGCTG
CGAGTTTCGAGACCTCCACAAATCACGCCGGCCCTACAACCGTTCCCGGC
ACGCTTGATGGGGGCTGTTTTCCGCGTGACGAGAAGCCACCATGGACTAA
TTTTCCAGTGCCGGGCCGCGTGGAACCTATTGTGACCGAACCGTTGGCAC
CGACACCTATCTTGCCCGTGGGATTTGGAGCCAGCCTGGAGGACTCGGAG
TCTATAGCATACAGTTCTAATTCTATGCCACTAACAGATGCAACACTAGG
TGTAGACAACACGGCAGGAGATCAGATGTGGGAAGGCGATGTGCTTCTTG
GACTCCTTTCGTCTGCGATTTTTCCAGCACCTTTTGAATCTTCAGCATGT
GCGGTCGAGGGGCATTCAGTTCCACAATTTCCCGCTGAAGAAATCTGTCG
GATCACAAACGACGTGGAAGGCTTGAATGACAGAAGGGAGAGAAATGAGA
GTGGACGATCTCAAAATGTGCGTGAACGAGATGCTGTGGTAAGAAATGAG
CCTACGAGCGAAGATGGAAACCCTTTTTTGCAAATTCTCCCATTGCAAAT
CTTAGAGACGGGACATTTCGAGAACCACGAGGATCTCTAG
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Coding sequence (CDS) from alignment at tig00004439_pilon:1291508..1292347+

>Gchil1960.t1 ID=Gchil1960.t1|Name=Gchil1960.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=840bp|location=Sequence derived from alignment at tig00004439_pilon:1291508..1292347+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGAACTACACCCCTGGCAGCGACAAGCGCGTTTCTGCAACGTCTAC
CTCCTCAAGTCACGAGAAGCCATTTATCTGTCACCATCCAGACTGTGTTC
GCCCTTTTAATAGAAAAACATCTCTGACGAACCACCTGAAGGCGCACAAA
AACAAAAAGTCAAGATCTATTAAGCGCTACCGACGCGCCAGAGAAAAGCA
GTTACAGCAGAATCTTGCTGCAGCGTCGCAAGGCATACCACATGCTGCTG
CGAGTTTCGAGACCTCCACAAATCACGCCGGCCCTACAACCGTTCCCGGC
ACGCTTGATGGGGGCTGTTTTCCGCGTGACGAGAAGCCACCATGGACTAA
TTTTCCAGTGCCGGGCCGCGTGGAACCTATTGTGACCGAACCGTTGGCAC
CGACACCTATCTTGCCCGTGGGATTTGGAGCCAGCCTGGAGGACTCGGAG
TCTATAGCATACAGTTCTAATTCTATGCCACTAACAGATGCAACACTAGG
TGTAGACAACACGGCAGGAGATCAGATGTGGGAAGGCGATGTGCTTCTTG
GACTCCTTTCGTCTGCGATTTTTCCAGCACCTTTTGAATCTTCAGCATGT
GCGGTCGAGGGGCATTCAGTTCCACAATTTCCCGCTGAAGAAATCTGTCG
GATCACAAACGACGTGGAAGGCTTGAATGACAGAAGGGAGAGAAATGAGA
GTGGACGATCTCAAAATGTGCGTGAACGAGATGCTGTGGTAAGAAATGAG
CCTACGAGCGAAGATGGAAACCCTTTTTTGCAAATTCTCCCATTGCAAAT
CTTAGAGACGGGACATTTCGAGAACCACGAGGATCTCTAG
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