Gchil1955.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1955.t1
Unique NameGchil1955.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1277850..1278656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1254432.SCE1572_18290
Preferred nameubiE
PFAMsUbie_methyltran
Max annot lvl28221|Deltaproteobacteria
KEGG rclassRC00003,RC01253,RC01662
KEGG koko:K03183
KEGG ReactionR04990,R04993,R06859,R08774,R09736
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00116,M00117
Evalue9.46e-52
EggNOG OGsCOG0500@1|root,COG2226@2|Bacteria,1MX8I@1224|Proteobacteria,42P2Z@68525|delta/epsilon subdivisions,2WNJ6@28221|Deltaproteobacteria,2YU8C@29|Myxococcales
EC2.1.1.163,2.1.1.201
DescriptionMethyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2)
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1955Gchil1955Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1277850..1278656 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1955.t1.stop1Gchil1955.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1277850..1277852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1955.t1.CDS1Gchil1955.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1277850..1278656 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1955.t1.exon1Gchil1955.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1277850..1278656 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1955.t1.start1Gchil1955.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1278654..1278656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1955.t1Gchil1955.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1277850..1278656 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1955.t1 ID=Gchil1955.t1|Name=Gchil1955.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=269bp
MQVIQATMVVVLTALVCSASCREVENDSHVVLGSGQFFDKIAARYDVLNQ
VISLGLHGCWRRSAIRKILPAKSVLDVSTGTGDLAISVAGNRSIRVVGLD
PSTEMLKVAREKANRFAKIIGDLQLVEGVAEKLPFESESFDAVAVAFGVR
NFQDIRKGLAEMGRVLRPGGRWVILEVGFTNGDRFLEKVYRIFVTKIMPK
VAGFFSGNRGAYQYLSDSMQRFPEVEQFIVMLEEAGLHVETQERLTPLGM
GPFLYSGNKSPENSCKSW*
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spliced messenger RNA

>Gchil1955.t1 ID=Gchil1955.t1|Name=Gchil1955.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00004439_pilon:1277850..1278656- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGTTATTCAAGCAACTATGGTGGTCGTGTTGACGGCGCTGGTGTG
CAGCGCGTCTTGTCGAGAGGTAGAAAATGATTCCCACGTTGTTCTCGGTT
CGGGCCAGTTTTTCGACAAAATTGCAGCTCGTTACGATGTTCTCAATCAA
GTAATCTCGCTGGGACTTCATGGTTGTTGGAGACGTTCTGCAATCAGAAA
GATTCTACCAGCGAAATCTGTATTGGACGTGAGCACAGGAACTGGAGATC
TAGCCATCTCCGTAGCAGGAAACCGATCGATCCGGGTTGTGGGTCTCGAT
CCTTCAACGGAGATGCTCAAAGTGGCGCGTGAAAAGGCGAACCGTTTTGC
AAAAATCATTGGAGACTTGCAATTAGTTGAAGGAGTTGCTGAAAAACTGC
CGTTCGAGAGCGAAAGTTTTGATGCGGTAGCTGTAGCCTTTGGAGTTCGA
AATTTTCAGGACATCAGGAAAGGTCTGGCAGAGATGGGACGCGTTCTCAG
ACCGGGCGGACGATGGGTGATATTGGAAGTGGGCTTTACAAACGGCGACC
GCTTTCTCGAAAAGGTGTATCGGATTTTCGTCACTAAGATTATGCCGAAG
GTAGCAGGCTTTTTCTCTGGTAATCGCGGTGCATATCAATATCTGAGCGA
TTCAATGCAGAGATTTCCAGAGGTTGAACAGTTCATCGTGATGCTCGAAG
AGGCTGGATTGCATGTAGAAACACAAGAGCGCTTAACACCTCTTGGCATG
GGTCCGTTCCTGTACAGTGGCAACAAATCACCGGAAAACAGTTGTAAAAG
TTGGTAA
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protein sequence of Gchil1955.t1

>Gchil1955.t1 ID=Gchil1955.t1|Name=Gchil1955.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=269bp
MQVIQATMVVVLTALVCSASCREVENDSHVVLGSGQFFDKIAARYDVLNQ
VISLGLHGCWRRSAIRKILPAKSVLDVSTGTGDLAISVAGNRSIRVVGLD
PSTEMLKVAREKANRFAKIIGDLQLVEGVAEKLPFESESFDAVAVAFGVR
NFQDIRKGLAEMGRVLRPGGRWVILEVGFTNGDRFLEKVYRIFVTKIMPK
VAGFFSGNRGAYQYLSDSMQRFPEVEQFIVMLEEAGLHVETQERLTPLGM
GPFLYSGNKSPENSCKSW*
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mRNA from alignment at tig00004439_pilon:1277850..1278656-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1955.t1 ID=Gchil1955.t1|Name=Gchil1955.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00004439_pilon:1277850..1278656- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGTTATTCAAGCAACTATGGTGGTCGTGTTGACGGCGCTGGTGTG
CAGCGCGTCTTGTCGAGAGGTAGAAAATGATTCCCACGTTGTTCTCGGTT
CGGGCCAGTTTTTCGACAAAATTGCAGCTCGTTACGATGTTCTCAATCAA
GTAATCTCGCTGGGACTTCATGGTTGTTGGAGACGTTCTGCAATCAGAAA
GATTCTACCAGCGAAATCTGTATTGGACGTGAGCACAGGAACTGGAGATC
TAGCCATCTCCGTAGCAGGAAACCGATCGATCCGGGTTGTGGGTCTCGAT
CCTTCAACGGAGATGCTCAAAGTGGCGCGTGAAAAGGCGAACCGTTTTGC
AAAAATCATTGGAGACTTGCAATTAGTTGAAGGAGTTGCTGAAAAACTGC
CGTTCGAGAGCGAAAGTTTTGATGCGGTAGCTGTAGCCTTTGGAGTTCGA
AATTTTCAGGACATCAGGAAAGGTCTGGCAGAGATGGGACGCGTTCTCAG
ACCGGGCGGACGATGGGTGATATTGGAAGTGGGCTTTACAAACGGCGACC
GCTTTCTCGAAAAGGTGTATCGGATTTTCGTCACTAAGATTATGCCGAAG
GTAGCAGGCTTTTTCTCTGGTAATCGCGGTGCATATCAATATCTGAGCGA
TTCAATGCAGAGATTTCCAGAGGTTGAACAGTTCATCGTGATGCTCGAAG
AGGCTGGATTGCATGTAGAAACACAAGAGCGCTTAACACCTCTTGGCATG
GGTCCGTTCCTGTACAGTGGCAACAAATCACCGGAAAACAGTTGTAAAAG
TTGGTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1277850..1278656-

>Gchil1955.t1 ID=Gchil1955.t1|Name=Gchil1955.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=807bp|location=Sequence derived from alignment at tig00004439_pilon:1277850..1278656- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGTTATTCAAGCAACTATGGTGGTCGTGTTGACGGCGCTGGTGTG
CAGCGCGTCTTGTCGAGAGGTAGAAAATGATTCCCACGTTGTTCTCGGTT
CGGGCCAGTTTTTCGACAAAATTGCAGCTCGTTACGATGTTCTCAATCAA
GTAATCTCGCTGGGACTTCATGGTTGTTGGAGACGTTCTGCAATCAGAAA
GATTCTACCAGCGAAATCTGTATTGGACGTGAGCACAGGAACTGGAGATC
TAGCCATCTCCGTAGCAGGAAACCGATCGATCCGGGTTGTGGGTCTCGAT
CCTTCAACGGAGATGCTCAAAGTGGCGCGTGAAAAGGCGAACCGTTTTGC
AAAAATCATTGGAGACTTGCAATTAGTTGAAGGAGTTGCTGAAAAACTGC
CGTTCGAGAGCGAAAGTTTTGATGCGGTAGCTGTAGCCTTTGGAGTTCGA
AATTTTCAGGACATCAGGAAAGGTCTGGCAGAGATGGGACGCGTTCTCAG
ACCGGGCGGACGATGGGTGATATTGGAAGTGGGCTTTACAAACGGCGACC
GCTTTCTCGAAAAGGTGTATCGGATTTTCGTCACTAAGATTATGCCGAAG
GTAGCAGGCTTTTTCTCTGGTAATCGCGGTGCATATCAATATCTGAGCGA
TTCAATGCAGAGATTTCCAGAGGTTGAACAGTTCATCGTGATGCTCGAAG
AGGCTGGATTGCATGTAGAAACACAAGAGCGCTTAACACCTCTTGGCATG
GGTCCGTTCCTGTACAGTGGCAACAAATCACCGGAAAACAGTTGTAAAAG
TTGGTAA
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