Gchil1953.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1953.t1
Unique NameGchil1953.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length703
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1274109..1276217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog115417.EPrPW00000023304
PFAMsPRMT5,PRMT5_C,PRMT5_TIM
Max annot lvl121069|Pythiales
Evalue2.3e-191
EggNOG OGsKOG0822@1|root,KOG0822@2759|Eukaryota,1MGAC@121069|Pythiales
DescriptionProtein arginine N-methyltransferase
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1953Gchil1953Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1274109..1276217 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1953.t1.stop1Gchil1953.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1274109..1274111 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1953.t1.CDS1Gchil1953.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1274109..1276217 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1953.t1.exon1Gchil1953.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1274109..1276217 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1953.t1.start1Gchil1953.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1276215..1276217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1953.t1Gchil1953.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1274109..1276217 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1953.t1 ID=Gchil1953.t1|Name=Gchil1953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=703bp
MQVRGTCTDSVQSLHLQTAEPESSGALPALIRSRALSGPILARGTHTIAP
LSLSPTPPASMVVTHPQTGQQLNIGLDCVSVPRLRDSLEIADSSGCDFVI
APLVHPRYERVNIDHSTTSKSSVFSAAPPPIVRDDPLTRSDLELTSGEWM
AGVVAKLSPWIRLDSPNPMLRAASEAAFFEEIAFATHLSLKGLLIPPPNG
GAQGVANLARCLSTALIQSPMLQLWIRLPVLDLPGKVPPFEADESAPLPT
DMEPWEVWNTIRTFCGEHPHLGVALELTAELPPRPVLERWVAEPVKLVLL
STSSYVTNKVGYPVLSRRHQDFIKMMFRMTPFFALTGRAHKVKGGDGYRP
FVQYLAHLFGKMPGTSEAETVEAPYYDYLQSPLQPLANNLGSQTYETFEK
DPVKYAAYEEAIRQCLEDHDYGKEKPVIMVVGAGRGPLVRSSLRAAEAVG
VQVRVIAVEKNPNAIVTLRNMRKEPGWEDVTVVARDMRNMESSLQADILV
SELLGSFGDNELSPECLDGANRLLKEGGVSIPSQYTSFLAPLSSTKLHNE
VRALGDSLKEMETPYVVKIHRGKLISETQPVFTFSHPNRDEVIDNSRYAK
LQFTMSETNVVHGFAGYFETVLYKSIKLSINPPTFTDGMFSWFPMYIPIA
NPLYVQGGKTITIHFWRCVSSAKVWYEWCVSDPGVTPIHNPNGRSYSIGL
RI*
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spliced messenger RNA

>Gchil1953.t1 ID=Gchil1953.t1|Name=Gchil1953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2109bp|location=Sequence derived from alignment at tig00004439_pilon:1274109..1276217- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTACGTGGCACGTGCACTGACAGCGTGCAGAGTCTGCACCTGCA
GACAGCAGAGCCAGAGTCATCAGGAGCTCTACCGGCTTTGATCCGTTCCC
GCGCTTTGTCTGGCCCCATCCTCGCCCGTGGCACCCATACTATCGCCCCT
CTCTCTCTATCCCCCACGCCACCAGCCAGCATGGTCGTCACGCACCCGCA
GACTGGGCAGCAGCTCAACATCGGTTTGGACTGCGTCTCCGTCCCTCGTT
TGCGCGATTCGCTCGAAATTGCTGACTCGTCTGGCTGTGATTTCGTCATA
GCCCCCCTCGTCCATCCCCGCTATGAGCGTGTCAACATCGATCACTCCAC
CACTTCAAAGTCCTCTGTCTTCTCGGCCGCACCTCCGCCAATTGTGCGCG
ATGACCCACTCACTCGCTCCGATTTAGAGCTCACGTCTGGCGAATGGATG
GCTGGCGTTGTGGCCAAGCTCTCTCCATGGATTCGTCTCGACAGCCCAAA
CCCCATGCTACGCGCCGCCAGCGAGGCTGCCTTCTTTGAGGAGATCGCTT
TTGCCACTCACCTTTCGCTCAAGGGGCTACTCATACCTCCTCCCAACGGC
GGCGCGCAAGGCGTGGCCAATTTGGCCCGTTGTTTATCTACTGCATTGAT
CCAGTCGCCCATGCTTCAACTCTGGATTCGTCTACCTGTTCTTGACCTTC
CAGGAAAAGTGCCTCCGTTCGAAGCGGATGAAAGCGCCCCCCTTCCCACT
GATATGGAACCTTGGGAGGTCTGGAATACAATACGCACTTTTTGCGGCGA
GCATCCGCACCTCGGTGTTGCACTTGAGCTCACTGCCGAATTACCACCAC
GTCCCGTTCTGGAACGATGGGTTGCAGAACCTGTCAAGCTTGTTTTGTTA
TCTACATCATCCTATGTCACCAACAAGGTAGGCTATCCAGTGCTATCGCG
AAGGCACCAGGACTTCATTAAGATGATGTTTCGAATGACCCCATTCTTCG
CATTAACCGGCCGAGCCCACAAGGTAAAGGGTGGTGATGGTTACCGACCT
TTTGTGCAGTACCTTGCACATCTGTTCGGCAAGATGCCAGGTACCAGCGA
GGCAGAAACAGTTGAAGCTCCCTACTATGATTACCTTCAGTCTCCTCTAC
AACCACTTGCCAACAACCTTGGGAGTCAGACGTACGAAACATTTGAAAAG
GATCCGGTCAAATACGCTGCTTACGAAGAAGCCATTCGACAGTGTTTAGA
AGATCACGACTATGGAAAAGAAAAGCCAGTCATCATGGTCGTTGGTGCCG
GCAGGGGTCCGCTAGTAAGGAGTAGTTTGCGAGCGGCAGAGGCTGTGGGA
GTTCAAGTTAGAGTCATTGCTGTTGAAAAGAATCCGAATGCTATTGTCAC
CTTGCGGAACATGAGGAAGGAGCCTGGATGGGAAGATGTTACTGTTGTGG
CCAGAGACATGCGAAATATGGAGAGCTCATTGCAAGCTGATATTTTGGTT
TCTGAACTTCTTGGATCATTTGGCGATAACGAGCTTTCACCTGAATGCCT
TGACGGCGCTAATCGCTTGTTGAAGGAAGGTGGCGTGTCAATACCGTCCC
AGTACACAAGCTTTCTTGCGCCGCTATCGTCAACCAAACTGCACAATGAA
GTTAGAGCACTTGGCGACTCATTGAAAGAAATGGAAACCCCTTATGTTGT
CAAGATTCATAGAGGGAAATTGATTTCTGAAACCCAGCCGGTTTTTACAT
TTTCTCATCCAAACAGGGATGAGGTTATCGATAACTCACGATATGCCAAG
CTGCAGTTCACAATGTCGGAGACAAATGTCGTTCACGGTTTTGCCGGTTA
TTTCGAAACCGTGCTGTACAAGAGTATTAAGCTTTCCATTAACCCACCAA
CTTTTACAGACGGAATGTTCTCATGGTTCCCGATGTACATTCCCATTGCA
AACCCTCTCTATGTTCAGGGAGGTAAGACAATTACTATTCATTTCTGGAG
GTGTGTATCTAGTGCCAAGGTTTGGTATGAGTGGTGTGTGAGTGACCCCG
GCGTCACACCAATTCACAATCCTAACGGGCGGTCATACTCGATTGGTTTG
CGGATTTGA
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protein sequence of Gchil1953.t1

>Gchil1953.t1 ID=Gchil1953.t1|Name=Gchil1953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=703bp
MQVRGTCTDSVQSLHLQTAEPESSGALPALIRSRALSGPILARGTHTIAP
LSLSPTPPASMVVTHPQTGQQLNIGLDCVSVPRLRDSLEIADSSGCDFVI
APLVHPRYERVNIDHSTTSKSSVFSAAPPPIVRDDPLTRSDLELTSGEWM
AGVVAKLSPWIRLDSPNPMLRAASEAAFFEEIAFATHLSLKGLLIPPPNG
GAQGVANLARCLSTALIQSPMLQLWIRLPVLDLPGKVPPFEADESAPLPT
DMEPWEVWNTIRTFCGEHPHLGVALELTAELPPRPVLERWVAEPVKLVLL
STSSYVTNKVGYPVLSRRHQDFIKMMFRMTPFFALTGRAHKVKGGDGYRP
FVQYLAHLFGKMPGTSEAETVEAPYYDYLQSPLQPLANNLGSQTYETFEK
DPVKYAAYEEAIRQCLEDHDYGKEKPVIMVVGAGRGPLVRSSLRAAEAVG
VQVRVIAVEKNPNAIVTLRNMRKEPGWEDVTVVARDMRNMESSLQADILV
SELLGSFGDNELSPECLDGANRLLKEGGVSIPSQYTSFLAPLSSTKLHNE
VRALGDSLKEMETPYVVKIHRGKLISETQPVFTFSHPNRDEVIDNSRYAK
LQFTMSETNVVHGFAGYFETVLYKSIKLSINPPTFTDGMFSWFPMYIPIA
NPLYVQGGKTITIHFWRCVSSAKVWYEWCVSDPGVTPIHNPNGRSYSIGL
RI*
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mRNA from alignment at tig00004439_pilon:1274109..1276217-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1953.t1 ID=Gchil1953.t1|Name=Gchil1953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2109bp|location=Sequence derived from alignment at tig00004439_pilon:1274109..1276217- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGTACGTGGCACGTGCACTGACAGCGTGCAGAGTCTGCACCTGCA
GACAGCAGAGCCAGAGTCATCAGGAGCTCTACCGGCTTTGATCCGTTCCC
GCGCTTTGTCTGGCCCCATCCTCGCCCGTGGCACCCATACTATCGCCCCT
CTCTCTCTATCCCCCACGCCACCAGCCAGCATGGTCGTCACGCACCCGCA
GACTGGGCAGCAGCTCAACATCGGTTTGGACTGCGTCTCCGTCCCTCGTT
TGCGCGATTCGCTCGAAATTGCTGACTCGTCTGGCTGTGATTTCGTCATA
GCCCCCCTCGTCCATCCCCGCTATGAGCGTGTCAACATCGATCACTCCAC
CACTTCAAAGTCCTCTGTCTTCTCGGCCGCACCTCCGCCAATTGTGCGCG
ATGACCCACTCACTCGCTCCGATTTAGAGCTCACGTCTGGCGAATGGATG
GCTGGCGTTGTGGCCAAGCTCTCTCCATGGATTCGTCTCGACAGCCCAAA
CCCCATGCTACGCGCCGCCAGCGAGGCTGCCTTCTTTGAGGAGATCGCTT
TTGCCACTCACCTTTCGCTCAAGGGGCTACTCATACCTCCTCCCAACGGC
GGCGCGCAAGGCGTGGCCAATTTGGCCCGTTGTTTATCTACTGCATTGAT
CCAGTCGCCCATGCTTCAACTCTGGATTCGTCTACCTGTTCTTGACCTTC
CAGGAAAAGTGCCTCCGTTCGAAGCGGATGAAAGCGCCCCCCTTCCCACT
GATATGGAACCTTGGGAGGTCTGGAATACAATACGCACTTTTTGCGGCGA
GCATCCGCACCTCGGTGTTGCACTTGAGCTCACTGCCGAATTACCACCAC
GTCCCGTTCTGGAACGATGGGTTGCAGAACCTGTCAAGCTTGTTTTGTTA
TCTACATCATCCTATGTCACCAACAAGGTAGGCTATCCAGTGCTATCGCG
AAGGCACCAGGACTTCATTAAGATGATGTTTCGAATGACCCCATTCTTCG
CATTAACCGGCCGAGCCCACAAGGTAAAGGGTGGTGATGGTTACCGACCT
TTTGTGCAGTACCTTGCACATCTGTTCGGCAAGATGCCAGGTACCAGCGA
GGCAGAAACAGTTGAAGCTCCCTACTATGATTACCTTCAGTCTCCTCTAC
AACCACTTGCCAACAACCTTGGGAGTCAGACGTACGAAACATTTGAAAAG
GATCCGGTCAAATACGCTGCTTACGAAGAAGCCATTCGACAGTGTTTAGA
AGATCACGACTATGGAAAAGAAAAGCCAGTCATCATGGTCGTTGGTGCCG
GCAGGGGTCCGCTAGTAAGGAGTAGTTTGCGAGCGGCAGAGGCTGTGGGA
GTTCAAGTTAGAGTCATTGCTGTTGAAAAGAATCCGAATGCTATTGTCAC
CTTGCGGAACATGAGGAAGGAGCCTGGATGGGAAGATGTTACTGTTGTGG
CCAGAGACATGCGAAATATGGAGAGCTCATTGCAAGCTGATATTTTGGTT
TCTGAACTTCTTGGATCATTTGGCGATAACGAGCTTTCACCTGAATGCCT
TGACGGCGCTAATCGCTTGTTGAAGGAAGGTGGCGTGTCAATACCGTCCC
AGTACACAAGCTTTCTTGCGCCGCTATCGTCAACCAAACTGCACAATGAA
GTTAGAGCACTTGGCGACTCATTGAAAGAAATGGAAACCCCTTATGTTGT
CAAGATTCATAGAGGGAAATTGATTTCTGAAACCCAGCCGGTTTTTACAT
TTTCTCATCCAAACAGGGATGAGGTTATCGATAACTCACGATATGCCAAG
CTGCAGTTCACAATGTCGGAGACAAATGTCGTTCACGGTTTTGCCGGTTA
TTTCGAAACCGTGCTGTACAAGAGTATTAAGCTTTCCATTAACCCACCAA
CTTTTACAGACGGAATGTTCTCATGGTTCCCGATGTACATTCCCATTGCA
AACCCTCTCTATGTTCAGGGAGGTAAGACAATTACTATTCATTTCTGGAG
GTGTGTATCTAGTGCCAAGGTTTGGTATGAGTGGTGTGTGAGTGACCCCG
GCGTCACACCAATTCACAATCCTAACGGGCGGTCATACTCGATTGGTTTG
CGGATTTGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1274109..1276217-

>Gchil1953.t1 ID=Gchil1953.t1|Name=Gchil1953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2109bp|location=Sequence derived from alignment at tig00004439_pilon:1274109..1276217- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGTACGTGGCACGTGCACTGACAGCGTGCAGAGTCTGCACCTGCA
GACAGCAGAGCCAGAGTCATCAGGAGCTCTACCGGCTTTGATCCGTTCCC
GCGCTTTGTCTGGCCCCATCCTCGCCCGTGGCACCCATACTATCGCCCCT
CTCTCTCTATCCCCCACGCCACCAGCCAGCATGGTCGTCACGCACCCGCA
GACTGGGCAGCAGCTCAACATCGGTTTGGACTGCGTCTCCGTCCCTCGTT
TGCGCGATTCGCTCGAAATTGCTGACTCGTCTGGCTGTGATTTCGTCATA
GCCCCCCTCGTCCATCCCCGCTATGAGCGTGTCAACATCGATCACTCCAC
CACTTCAAAGTCCTCTGTCTTCTCGGCCGCACCTCCGCCAATTGTGCGCG
ATGACCCACTCACTCGCTCCGATTTAGAGCTCACGTCTGGCGAATGGATG
GCTGGCGTTGTGGCCAAGCTCTCTCCATGGATTCGTCTCGACAGCCCAAA
CCCCATGCTACGCGCCGCCAGCGAGGCTGCCTTCTTTGAGGAGATCGCTT
TTGCCACTCACCTTTCGCTCAAGGGGCTACTCATACCTCCTCCCAACGGC
GGCGCGCAAGGCGTGGCCAATTTGGCCCGTTGTTTATCTACTGCATTGAT
CCAGTCGCCCATGCTTCAACTCTGGATTCGTCTACCTGTTCTTGACCTTC
CAGGAAAAGTGCCTCCGTTCGAAGCGGATGAAAGCGCCCCCCTTCCCACT
GATATGGAACCTTGGGAGGTCTGGAATACAATACGCACTTTTTGCGGCGA
GCATCCGCACCTCGGTGTTGCACTTGAGCTCACTGCCGAATTACCACCAC
GTCCCGTTCTGGAACGATGGGTTGCAGAACCTGTCAAGCTTGTTTTGTTA
TCTACATCATCCTATGTCACCAACAAGGTAGGCTATCCAGTGCTATCGCG
AAGGCACCAGGACTTCATTAAGATGATGTTTCGAATGACCCCATTCTTCG
CATTAACCGGCCGAGCCCACAAGGTAAAGGGTGGTGATGGTTACCGACCT
TTTGTGCAGTACCTTGCACATCTGTTCGGCAAGATGCCAGGTACCAGCGA
GGCAGAAACAGTTGAAGCTCCCTACTATGATTACCTTCAGTCTCCTCTAC
AACCACTTGCCAACAACCTTGGGAGTCAGACGTACGAAACATTTGAAAAG
GATCCGGTCAAATACGCTGCTTACGAAGAAGCCATTCGACAGTGTTTAGA
AGATCACGACTATGGAAAAGAAAAGCCAGTCATCATGGTCGTTGGTGCCG
GCAGGGGTCCGCTAGTAAGGAGTAGTTTGCGAGCGGCAGAGGCTGTGGGA
GTTCAAGTTAGAGTCATTGCTGTTGAAAAGAATCCGAATGCTATTGTCAC
CTTGCGGAACATGAGGAAGGAGCCTGGATGGGAAGATGTTACTGTTGTGG
CCAGAGACATGCGAAATATGGAGAGCTCATTGCAAGCTGATATTTTGGTT
TCTGAACTTCTTGGATCATTTGGCGATAACGAGCTTTCACCTGAATGCCT
TGACGGCGCTAATCGCTTGTTGAAGGAAGGTGGCGTGTCAATACCGTCCC
AGTACACAAGCTTTCTTGCGCCGCTATCGTCAACCAAACTGCACAATGAA
GTTAGAGCACTTGGCGACTCATTGAAAGAAATGGAAACCCCTTATGTTGT
CAAGATTCATAGAGGGAAATTGATTTCTGAAACCCAGCCGGTTTTTACAT
TTTCTCATCCAAACAGGGATGAGGTTATCGATAACTCACGATATGCCAAG
CTGCAGTTCACAATGTCGGAGACAAATGTCGTTCACGGTTTTGCCGGTTA
TTTCGAAACCGTGCTGTACAAGAGTATTAAGCTTTCCATTAACCCACCAA
CTTTTACAGACGGAATGTTCTCATGGTTCCCGATGTACATTCCCATTGCA
AACCCTCTCTATGTTCAGGGAGGTAAGACAATTACTATTCATTTCTGGAG
GTGTGTATCTAGTGCCAAGGTTTGGTATGAGTGGTGTGTGAGTGACCCCG
GCGTCACACCAATTCACAATCCTAACGGGCGGTCATACTCGATTGGTTTG
CGGATTTGA
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