Gchil1952.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1952.t1
Unique NameGchil1952.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length528
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1272098..1273681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173022.Cri9333_1320
PFAMsFIST,FIST_C
Max annot lvl1117|Cyanobacteria
Evalue5.32e-56
EggNOG OGsCOG4398@1|root,COG4398@2|Bacteria,1G0TB@1117|Cyanobacteria,1H74Y@1150|Oscillatoriales
DescriptionPFAM FIST C domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1952Gchil1952Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1272098..1273681 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1952.t1.start1Gchil1952.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1272098..1272100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1952.t1.CDS1Gchil1952.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1272098..1273681 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1952.t1.exon1Gchil1952.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1272098..1273681 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1952.t1.stop1Gchil1952.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1273679..1273681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1952.t1Gchil1952.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1272098..1273681 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1952.t1 ID=Gchil1952.t1|Name=Gchil1952.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=528bp
MFPAFVPHIPLLTGVKCSSRSLRCRSPRRVPCYVRRKRLRCAAQSNPQSA
KEEAPQLAFSTAASSATKLNSALTEAASRALSKLGPGGPPNLAFVFVSVR
YSLSNIGPSGRDSLDLVVPRLRSLVPELKAVLGCTSDGVIGTGPLSDVVE
LQNVPSVSITLARLPNVRITPFHVMPDDLPNPDARQTKWRQLVSNPDETN
NPPAFIVLSDPSFAEKGELDTFLSGVKFAYPGSCVVGSLASAAAAFAQGH
MFCTLPRDVLSPHSSSLRDSGLVGIALTGDIELDCLVSESCRPIGPLYEV
RKVSSGIVNEMELVGRPSTLMSAMSHLKSLISYATPQEKVMMQDYLHVGI
AIESVANSDTDSESYLIRHVRGVDLDGGGIAVAHNIRAGQRIRFFLQERE
AAEKALDSNIQRYKRSELANSLVGYSNPPFGAMVFVDNSRGRALFREPCT
ETRNLTEFATGVPIAGCFAGGQIGPCESGVGNKNMPSVIHHAANLIALVR
RRSGISPTEPVDSPSTSAADLDESAEK*
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spliced messenger RNA

>Gchil1952.t1 ID=Gchil1952.t1|Name=Gchil1952.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at tig00004439_pilon:1272098..1273681+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCCAGCTTTCGTTCCGCACATCCCTCTTCTAACTGGTGTGAAATG
TTCGTCGCGCTCGCTGCGATGCCGTTCGCCGCGAAGAGTCCCTTGCTATG
TCCGTCGTAAGCGCTTGCGCTGTGCCGCTCAGTCGAACCCGCAATCCGCA
AAGGAGGAAGCACCGCAGCTCGCCTTCTCTACTGCCGCGTCATCTGCTAC
AAAATTAAATTCCGCCTTGACCGAGGCAGCATCTCGTGCGCTATCTAAGC
TGGGTCCAGGAGGCCCCCCGAATCTCGCCTTCGTCTTCGTTTCGGTGCGC
TACAGTCTATCAAACATCGGACCGTCTGGCCGCGACTCGCTTGACTTGGT
GGTGCCGCGTCTTCGCTCCTTGGTTCCAGAACTGAAGGCAGTCCTAGGAT
GCACATCTGACGGGGTTATCGGCACTGGTCCGTTGAGCGATGTTGTTGAG
CTACAAAATGTGCCTTCCGTTTCGATTACGCTCGCACGTCTTCCGAACGT
GAGAATAACTCCATTCCATGTAATGCCCGATGATTTGCCTAATCCGGATG
CCAGACAAACTAAATGGAGACAGCTTGTTTCGAACCCAGACGAAACGAAC
AACCCCCCTGCGTTCATTGTGCTCTCTGATCCAAGTTTTGCTGAAAAGGG
AGAGCTCGATACATTCTTATCTGGAGTAAAATTCGCGTATCCTGGAAGCT
GCGTTGTTGGTTCTCTAGCCTCTGCCGCCGCTGCTTTTGCTCAAGGACAT
ATGTTTTGTACGTTGCCCAGAGACGTCCTTTCGCCACATTCTTCCTCACT
AAGAGACTCTGGCTTGGTAGGTATCGCGCTAACGGGTGATATTGAGCTGG
ACTGTCTTGTCTCTGAGAGTTGTAGGCCTATAGGACCTCTTTACGAAGTT
CGCAAAGTCTCCAGTGGAATCGTTAATGAGATGGAGCTGGTTGGGCGCCC
ATCCACTCTAATGTCAGCAATGTCTCATCTGAAGAGTCTGATATCGTATG
CAACACCGCAAGAAAAAGTTATGATGCAGGATTATCTACACGTGGGCATC
GCCATCGAATCGGTTGCCAATTCAGACACCGATTCCGAATCTTATCTCAT
TCGACATGTGCGAGGGGTCGATCTAGATGGCGGTGGTATTGCAGTCGCCC
ACAACATCCGCGCAGGTCAACGCATTCGCTTCTTTTTGCAAGAACGCGAA
GCAGCGGAAAAGGCCCTGGACTCTAACATCCAAAGATACAAGCGTTCGGA
ACTGGCCAATTCTTTGGTTGGGTACAGCAATCCACCTTTTGGAGCGATGG
TTTTCGTTGACAACAGTCGAGGCCGGGCTCTCTTCCGAGAGCCATGCACG
GAGACCAGAAATCTGACTGAGTTTGCCACGGGAGTGCCAATAGCCGGATG
TTTCGCTGGTGGACAGATTGGTCCGTGCGAGTCTGGTGTCGGAAACAAGA
ACATGCCTTCCGTAATTCATCATGCTGCAAATCTTATCGCCCTTGTTCGA
AGGAGAAGTGGTATCTCGCCTACAGAGCCCGTCGACAGCCCCTCCACTTC
AGCGGCTGATCTCGACGAAAGCGCAGAGAAGTAG
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protein sequence of Gchil1952.t1

>Gchil1952.t1 ID=Gchil1952.t1|Name=Gchil1952.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=528bp
MFPAFVPHIPLLTGVKCSSRSLRCRSPRRVPCYVRRKRLRCAAQSNPQSA
KEEAPQLAFSTAASSATKLNSALTEAASRALSKLGPGGPPNLAFVFVSVR
YSLSNIGPSGRDSLDLVVPRLRSLVPELKAVLGCTSDGVIGTGPLSDVVE
LQNVPSVSITLARLPNVRITPFHVMPDDLPNPDARQTKWRQLVSNPDETN
NPPAFIVLSDPSFAEKGELDTFLSGVKFAYPGSCVVGSLASAAAAFAQGH
MFCTLPRDVLSPHSSSLRDSGLVGIALTGDIELDCLVSESCRPIGPLYEV
RKVSSGIVNEMELVGRPSTLMSAMSHLKSLISYATPQEKVMMQDYLHVGI
AIESVANSDTDSESYLIRHVRGVDLDGGGIAVAHNIRAGQRIRFFLQERE
AAEKALDSNIQRYKRSELANSLVGYSNPPFGAMVFVDNSRGRALFREPCT
ETRNLTEFATGVPIAGCFAGGQIGPCESGVGNKNMPSVIHHAANLIALVR
RRSGISPTEPVDSPSTSAADLDESAEK*
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mRNA from alignment at tig00004439_pilon:1272098..1273681+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1952.t1 ID=Gchil1952.t1|Name=Gchil1952.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at tig00004439_pilon:1272098..1273681+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCCAGCTTTCGTTCCGCACATCCCTCTTCTAACTGGTGTGAAATG
TTCGTCGCGCTCGCTGCGATGCCGTTCGCCGCGAAGAGTCCCTTGCTATG
TCCGTCGTAAGCGCTTGCGCTGTGCCGCTCAGTCGAACCCGCAATCCGCA
AAGGAGGAAGCACCGCAGCTCGCCTTCTCTACTGCCGCGTCATCTGCTAC
AAAATTAAATTCCGCCTTGACCGAGGCAGCATCTCGTGCGCTATCTAAGC
TGGGTCCAGGAGGCCCCCCGAATCTCGCCTTCGTCTTCGTTTCGGTGCGC
TACAGTCTATCAAACATCGGACCGTCTGGCCGCGACTCGCTTGACTTGGT
GGTGCCGCGTCTTCGCTCCTTGGTTCCAGAACTGAAGGCAGTCCTAGGAT
GCACATCTGACGGGGTTATCGGCACTGGTCCGTTGAGCGATGTTGTTGAG
CTACAAAATGTGCCTTCCGTTTCGATTACGCTCGCACGTCTTCCGAACGT
GAGAATAACTCCATTCCATGTAATGCCCGATGATTTGCCTAATCCGGATG
CCAGACAAACTAAATGGAGACAGCTTGTTTCGAACCCAGACGAAACGAAC
AACCCCCCTGCGTTCATTGTGCTCTCTGATCCAAGTTTTGCTGAAAAGGG
AGAGCTCGATACATTCTTATCTGGAGTAAAATTCGCGTATCCTGGAAGCT
GCGTTGTTGGTTCTCTAGCCTCTGCCGCCGCTGCTTTTGCTCAAGGACAT
ATGTTTTGTACGTTGCCCAGAGACGTCCTTTCGCCACATTCTTCCTCACT
AAGAGACTCTGGCTTGGTAGGTATCGCGCTAACGGGTGATATTGAGCTGG
ACTGTCTTGTCTCTGAGAGTTGTAGGCCTATAGGACCTCTTTACGAAGTT
CGCAAAGTCTCCAGTGGAATCGTTAATGAGATGGAGCTGGTTGGGCGCCC
ATCCACTCTAATGTCAGCAATGTCTCATCTGAAGAGTCTGATATCGTATG
CAACACCGCAAGAAAAAGTTATGATGCAGGATTATCTACACGTGGGCATC
GCCATCGAATCGGTTGCCAATTCAGACACCGATTCCGAATCTTATCTCAT
TCGACATGTGCGAGGGGTCGATCTAGATGGCGGTGGTATTGCAGTCGCCC
ACAACATCCGCGCAGGTCAACGCATTCGCTTCTTTTTGCAAGAACGCGAA
GCAGCGGAAAAGGCCCTGGACTCTAACATCCAAAGATACAAGCGTTCGGA
ACTGGCCAATTCTTTGGTTGGGTACAGCAATCCACCTTTTGGAGCGATGG
TTTTCGTTGACAACAGTCGAGGCCGGGCTCTCTTCCGAGAGCCATGCACG
GAGACCAGAAATCTGACTGAGTTTGCCACGGGAGTGCCAATAGCCGGATG
TTTCGCTGGTGGACAGATTGGTCCGTGCGAGTCTGGTGTCGGAAACAAGA
ACATGCCTTCCGTAATTCATCATGCTGCAAATCTTATCGCCCTTGTTCGA
AGGAGAAGTGGTATCTCGCCTACAGAGCCCGTCGACAGCCCCTCCACTTC
AGCGGCTGATCTCGACGAAAGCGCAGAGAAGTAG
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Coding sequence (CDS) from alignment at tig00004439_pilon:1272098..1273681+

>Gchil1952.t1 ID=Gchil1952.t1|Name=Gchil1952.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1584bp|location=Sequence derived from alignment at tig00004439_pilon:1272098..1273681+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCCAGCTTTCGTTCCGCACATCCCTCTTCTAACTGGTGTGAAATG
TTCGTCGCGCTCGCTGCGATGCCGTTCGCCGCGAAGAGTCCCTTGCTATG
TCCGTCGTAAGCGCTTGCGCTGTGCCGCTCAGTCGAACCCGCAATCCGCA
AAGGAGGAAGCACCGCAGCTCGCCTTCTCTACTGCCGCGTCATCTGCTAC
AAAATTAAATTCCGCCTTGACCGAGGCAGCATCTCGTGCGCTATCTAAGC
TGGGTCCAGGAGGCCCCCCGAATCTCGCCTTCGTCTTCGTTTCGGTGCGC
TACAGTCTATCAAACATCGGACCGTCTGGCCGCGACTCGCTTGACTTGGT
GGTGCCGCGTCTTCGCTCCTTGGTTCCAGAACTGAAGGCAGTCCTAGGAT
GCACATCTGACGGGGTTATCGGCACTGGTCCGTTGAGCGATGTTGTTGAG
CTACAAAATGTGCCTTCCGTTTCGATTACGCTCGCACGTCTTCCGAACGT
GAGAATAACTCCATTCCATGTAATGCCCGATGATTTGCCTAATCCGGATG
CCAGACAAACTAAATGGAGACAGCTTGTTTCGAACCCAGACGAAACGAAC
AACCCCCCTGCGTTCATTGTGCTCTCTGATCCAAGTTTTGCTGAAAAGGG
AGAGCTCGATACATTCTTATCTGGAGTAAAATTCGCGTATCCTGGAAGCT
GCGTTGTTGGTTCTCTAGCCTCTGCCGCCGCTGCTTTTGCTCAAGGACAT
ATGTTTTGTACGTTGCCCAGAGACGTCCTTTCGCCACATTCTTCCTCACT
AAGAGACTCTGGCTTGGTAGGTATCGCGCTAACGGGTGATATTGAGCTGG
ACTGTCTTGTCTCTGAGAGTTGTAGGCCTATAGGACCTCTTTACGAAGTT
CGCAAAGTCTCCAGTGGAATCGTTAATGAGATGGAGCTGGTTGGGCGCCC
ATCCACTCTAATGTCAGCAATGTCTCATCTGAAGAGTCTGATATCGTATG
CAACACCGCAAGAAAAAGTTATGATGCAGGATTATCTACACGTGGGCATC
GCCATCGAATCGGTTGCCAATTCAGACACCGATTCCGAATCTTATCTCAT
TCGACATGTGCGAGGGGTCGATCTAGATGGCGGTGGTATTGCAGTCGCCC
ACAACATCCGCGCAGGTCAACGCATTCGCTTCTTTTTGCAAGAACGCGAA
GCAGCGGAAAAGGCCCTGGACTCTAACATCCAAAGATACAAGCGTTCGGA
ACTGGCCAATTCTTTGGTTGGGTACAGCAATCCACCTTTTGGAGCGATGG
TTTTCGTTGACAACAGTCGAGGCCGGGCTCTCTTCCGAGAGCCATGCACG
GAGACCAGAAATCTGACTGAGTTTGCCACGGGAGTGCCAATAGCCGGATG
TTTCGCTGGTGGACAGATTGGTCCGTGCGAGTCTGGTGTCGGAAACAAGA
ACATGCCTTCCGTAATTCATCATGCTGCAAATCTTATCGCCCTTGTTCGA
AGGAGAAGTGGTATCTCGCCTACAGAGCCCGTCGACAGCCCCTCCACTTC
AGCGGCTGATCTCGACGAAAGCGCAGAGAAGTAG
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