Gchil1948.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1948.t1
Unique NameGchil1948.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length263
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1266288..1267076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7209.EFO27794.1
Preferred nameMETTL1
PFAMsMethyltransf_4
Max annot lvl33208|Metazoa
KEGG koko:K03439
GOsGO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234
Evalue3.53e-70
EggNOG OGsCOG0220@1|root,KOG3115@2759|Eukaryota,38EJS@33154|Opisthokonta,3BGW2@33208|Metazoa,3CZXB@33213|Bilateria,40CT5@6231|Nematoda,1KVHR@119089|Chromadorea
EC2.1.1.33
DescriptionCatalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1948Gchil1948Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1266288..1267076 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1948.t1.stop1Gchil1948.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1266288..1266290 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1948.t1.CDS1Gchil1948.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1266288..1267076 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1948.t1.exon1Gchil1948.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1266288..1267076 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1948.t1.start1Gchil1948.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1267074..1267076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1948.t1Gchil1948.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1266288..1267076 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1948.t1 ID=Gchil1948.t1|Name=Gchil1948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=263bp
MKEMSPTIEAPKKSNASDADEIAEQGGRVRWMVSKRDFRARAHSNPLNDG
LFDPPLTPSELPMGKLFDNAPSSKVDWCDVGCGYGGLLASLSTAFPHKSM
LGLEIRDRVADFCRQRVAEMRKQYPGNYGNVAFERSNAMKFLPNYFTKAS
LEKLFFCYPDPHFKRKKNRQRIISTQLLAEYAYVLEQGTGVAYVVTDVPE
LFEWMVARFEAHPLFERRSDEEHSADTVSAFVRDCTDEAQRVEKSDRKKQ
DASFRRLSNPHE*
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spliced messenger RNA

>Gchil1948.t1 ID=Gchil1948.t1|Name=Gchil1948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00004439_pilon:1266288..1267076- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGAAATGTCTCCCACGATCGAAGCTCCCAAGAAATCGAACGCAAG
CGACGCCGATGAAATAGCAGAACAAGGAGGACGCGTACGATGGATGGTGA
GCAAGCGCGATTTTCGAGCGCGTGCTCACTCCAATCCTCTGAACGATGGG
CTTTTTGACCCGCCCCTCACCCCGTCCGAGCTGCCTATGGGCAAACTTTT
CGACAATGCACCTTCCTCTAAGGTGGACTGGTGCGATGTAGGCTGTGGGT
ACGGAGGCTTACTTGCAAGCCTCAGCACTGCATTCCCGCACAAAAGTATG
CTTGGGCTGGAAATTCGCGACCGCGTCGCCGATTTCTGTCGTCAGCGAGT
TGCCGAAATGCGCAAGCAATACCCTGGTAACTATGGAAATGTCGCCTTTG
AACGAAGCAACGCCATGAAGTTCCTCCCAAACTACTTTACCAAGGCGAGT
TTAGAGAAGCTTTTCTTTTGTTACCCAGATCCTCATTTCAAGCGGAAAAA
GAATCGCCAGCGCATTATTTCGACACAGTTGCTTGCGGAATACGCATACG
TGCTCGAGCAAGGAACGGGTGTGGCGTATGTGGTAACCGACGTGCCAGAG
CTTTTTGAATGGATGGTAGCGCGCTTTGAGGCGCACCCGTTGTTTGAAAG
GCGTTCCGATGAGGAACACTCAGCGGATACCGTGTCTGCTTTTGTGCGTG
ATTGCACAGATGAAGCTCAGCGCGTGGAGAAAAGCGACAGAAAGAAACAA
GACGCATCATTTCGTCGCTTATCGAACCCACACGAATAA
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protein sequence of Gchil1948.t1

>Gchil1948.t1 ID=Gchil1948.t1|Name=Gchil1948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=263bp
MKEMSPTIEAPKKSNASDADEIAEQGGRVRWMVSKRDFRARAHSNPLNDG
LFDPPLTPSELPMGKLFDNAPSSKVDWCDVGCGYGGLLASLSTAFPHKSM
LGLEIRDRVADFCRQRVAEMRKQYPGNYGNVAFERSNAMKFLPNYFTKAS
LEKLFFCYPDPHFKRKKNRQRIISTQLLAEYAYVLEQGTGVAYVVTDVPE
LFEWMVARFEAHPLFERRSDEEHSADTVSAFVRDCTDEAQRVEKSDRKKQ
DASFRRLSNPHE*
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mRNA from alignment at tig00004439_pilon:1266288..1267076-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1948.t1 ID=Gchil1948.t1|Name=Gchil1948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=789bp|location=Sequence derived from alignment at tig00004439_pilon:1266288..1267076- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGAAATGTCTCCCACGATCGAAGCTCCCAAGAAATCGAACGCAAG
CGACGCCGATGAAATAGCAGAACAAGGAGGACGCGTACGATGGATGGTGA
GCAAGCGCGATTTTCGAGCGCGTGCTCACTCCAATCCTCTGAACGATGGG
CTTTTTGACCCGCCCCTCACCCCGTCCGAGCTGCCTATGGGCAAACTTTT
CGACAATGCACCTTCCTCTAAGGTGGACTGGTGCGATGTAGGCTGTGGGT
ACGGAGGCTTACTTGCAAGCCTCAGCACTGCATTCCCGCACAAAAGTATG
CTTGGGCTGGAAATTCGCGACCGCGTCGCCGATTTCTGTCGTCAGCGAGT
TGCCGAAATGCGCAAGCAATACCCTGGTAACTATGGAAATGTCGCCTTTG
AACGAAGCAACGCCATGAAGTTCCTCCCAAACTACTTTACCAAGGCGAGT
TTAGAGAAGCTTTTCTTTTGTTACCCAGATCCTCATTTCAAGCGGAAAAA
GAATCGCCAGCGCATTATTTCGACACAGTTGCTTGCGGAATACGCATACG
TGCTCGAGCAAGGAACGGGTGTGGCGTATGTGGTAACCGACGTGCCAGAG
CTTTTTGAATGGATGGTAGCGCGCTTTGAGGCGCACCCGTTGTTTGAAAG
GCGTTCCGATGAGGAACACTCAGCGGATACCGTGTCTGCTTTTGTGCGTG
ATTGCACAGATGAAGCTCAGCGCGTGGAGAAAAGCGACAGAAAGAAACAA
GACGCATCATTTCGTCGCTTATCGAACCCACACGAATAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1266288..1267076-

>Gchil1948.t1 ID=Gchil1948.t1|Name=Gchil1948.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=789bp|location=Sequence derived from alignment at tig00004439_pilon:1266288..1267076- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGAAATGTCTCCCACGATCGAAGCTCCCAAGAAATCGAACGCAAG
CGACGCCGATGAAATAGCAGAACAAGGAGGACGCGTACGATGGATGGTGA
GCAAGCGCGATTTTCGAGCGCGTGCTCACTCCAATCCTCTGAACGATGGG
CTTTTTGACCCGCCCCTCACCCCGTCCGAGCTGCCTATGGGCAAACTTTT
CGACAATGCACCTTCCTCTAAGGTGGACTGGTGCGATGTAGGCTGTGGGT
ACGGAGGCTTACTTGCAAGCCTCAGCACTGCATTCCCGCACAAAAGTATG
CTTGGGCTGGAAATTCGCGACCGCGTCGCCGATTTCTGTCGTCAGCGAGT
TGCCGAAATGCGCAAGCAATACCCTGGTAACTATGGAAATGTCGCCTTTG
AACGAAGCAACGCCATGAAGTTCCTCCCAAACTACTTTACCAAGGCGAGT
TTAGAGAAGCTTTTCTTTTGTTACCCAGATCCTCATTTCAAGCGGAAAAA
GAATCGCCAGCGCATTATTTCGACACAGTTGCTTGCGGAATACGCATACG
TGCTCGAGCAAGGAACGGGTGTGGCGTATGTGGTAACCGACGTGCCAGAG
CTTTTTGAATGGATGGTAGCGCGCTTTGAGGCGCACCCGTTGTTTGAAAG
GCGTTCCGATGAGGAACACTCAGCGGATACCGTGTCTGCTTTTGTGCGTG
ATTGCACAGATGAAGCTCAGCGCGTGGAGAAAAGCGACAGAAAGAAACAA
GACGCATCATTTCGTCGCTTATCGAACCCACACGAATAA
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