Gchil1946.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1946.t1
Unique NameGchil1946.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length509
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1262616..1264142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10090.ENSMUSP00000141020
PFAMsKA1,Pkinase
Max annot lvl33208|Metazoa
KEGG koko:K08798
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004679,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006325,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010646,GO:0010648,GO:0016043,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0023051,GO:0023052,GO:0023057,GO:0031588,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032007,GO:0032991,GO:0033554,GO:0035173,GO:0035174,GO:0035404,GO:0035556,GO:0036211,GO:0042149,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051716,GO:0061695,GO:0065007,GO:0071496,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1902911,GO:1990234
Evalue3.58e-23
EggNOG OGsKOG0586@1|root,KOG0586@2759|Eukaryota,38DPZ@33154|Opisthokonta,3BBR0@33208|Metazoa,3CRTT@33213|Bilateria,48J5I@7711|Chordata,49FAW@7742|Vertebrata,3JJ42@40674|Mammalia,35RIA@314146|Euarchontoglires,4Q7MK@9989|Rodentia
EC2.7.11.1
DescriptionSperm motility kinase
COG categoryT
BRITEko00000,ko01000,ko01001,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1946Gchil1946Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1262616..1264142 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1946.t1.stop1Gchil1946.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1262616..1262618 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1946.t1.CDS1Gchil1946.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1262616..1264142 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1946.t1.exon1Gchil1946.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1262616..1264142 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1946.t1.start1Gchil1946.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1264140..1264142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1946.t1Gchil1946.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1262616..1264142 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1946.t1 ID=Gchil1946.t1|Name=Gchil1946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=509bp
MSHSPTVAAAIKAGAASPVAGAAPHVLDAWLLVRRRALLTIPRRRYVVLT
QDHVLMIDSTPVLHLVDCQLSSNSSSSVIDLSPAPHCGIPYRIFADSPFQ
YSKWRAALQASASASIRRYYRVDASALIGVGVHGVIRRAYPQMPFRDESI
ASSASVSDYSLQTTHTRSLSIPRFRNKSLTPTPLRRPALGLSAPADSLPY
HPVTQPDPAMTVPASNSDKRLLRNVSHKTNPSSSRHEVQLPSSHPLSVAV
KTVSRTGDGTVSVASEILFAKARLDHFAIINVLDIFETVNEVHVVMEECM
GGSLTQYVHTNGPLSHHLARSLFSPLLKAVGYMHASGIVHWDICPNNVLF
LHPDLPLEPKLIDFSTSRPINPATGRVPSEHSIFFEKGKVSSLACASPEL
LTSKAHRYAAKADMWQLGCVLYFLLVGKLPFSNRYPQDASVANTILTFCK
LRSAERQDFLFSPSYVGNVHLKPQAKEIIMKLLCPNPRMRPNALQCLREF
SFLTHHNP*
back to top

spliced messenger RNA

>Gchil1946.t1 ID=Gchil1946.t1|Name=Gchil1946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00004439_pilon:1262616..1264142- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCACAGTCCCACCGTGGCGGCCGCCATCAAGGCCGGCGCCGCGTC
GCCCGTCGCCGGCGCCGCGCCGCATGTGCTCGACGCCTGGCTGCTCGTGC
GCCGCCGCGCTTTGCTCACAATTCCCAGGCGTCGCTACGTCGTCCTCACG
CAGGACCACGTGCTCATGATTGACAGCACCCCCGTGCTGCACCTTGTTGA
CTGCCAGCTTAGCTCTAACTCCTCGTCCAGTGTCATCGACCTCTCGCCCG
CCCCCCACTGCGGCATTCCGTATCGCATCTTCGCCGACTCTCCATTCCAA
TATTCCAAGTGGAGAGCCGCCCTGCAGGCCAGCGCCTCCGCCTCCATTCG
CCGCTACTACCGCGTAGACGCTTCTGCGCTCATTGGCGTCGGCGTGCATG
GCGTCATTCGTCGCGCCTACCCGCAGATGCCCTTTCGGGACGAGTCCATC
GCCTCGTCTGCTTCCGTGTCCGACTACTCGCTGCAAACCACGCACACCAG
GTCTCTGTCCATCCCCCGCTTCCGCAATAAGTCCCTCACCCCCACTCCGC
TCCGCCGCCCCGCGCTCGGGCTCTCGGCCCCCGCCGACTCTTTGCCCTAC
CACCCTGTCACCCAGCCGGATCCTGCCATGACGGTGCCCGCCTCAAACAG
CGACAAACGTCTGCTCAGGAATGTTTCGCACAAGACGAATCCGTCGTCGT
CGCGTCACGAAGTGCAATTGCCTTCGTCACACCCGCTCTCCGTTGCCGTC
AAAACCGTGTCGCGCACCGGCGACGGCACCGTGTCCGTTGCGAGTGAAAT
TCTGTTCGCAAAGGCCCGATTGGATCACTTTGCCATCATCAATGTGCTCG
ACATCTTCGAGACCGTCAACGAGGTGCACGTCGTCATGGAGGAGTGCATG
GGCGGATCTCTCACCCAGTACGTGCACACCAATGGCCCGCTATCTCACCA
TTTGGCCCGATCGCTCTTCTCGCCCTTGCTGAAAGCCGTTGGCTACATGC
ATGCGTCGGGCATTGTGCATTGGGATATATGTCCAAACAATGTGCTCTTC
TTGCACCCCGATCTTCCTCTAGAGCCTAAATTAATTGACTTTTCTACATC
ACGCCCTATCAATCCTGCTACCGGCCGTGTGCCATCGGAGCACTCCATTT
TCTTCGAAAAGGGTAAGGTCTCATCGTTGGCTTGTGCATCGCCGGAGCTC
CTCACTTCGAAGGCCCATCGGTATGCAGCCAAGGCCGACATGTGGCAATT
GGGCTGCGTTCTCTACTTTCTGCTTGTTGGAAAGCTTCCGTTTTCGAATC
GATACCCCCAGGATGCTTCCGTCGCAAATACCATTCTCACCTTCTGCAAG
CTGCGAAGTGCTGAGCGGCAAGATTTCCTCTTCTCGCCATCTTATGTTGG
TAACGTTCATCTCAAGCCACAGGCAAAAGAAATCATCATGAAGCTTTTGT
GTCCAAATCCGCGCATGCGACCAAATGCGCTTCAATGTCTCCGAGAGTTC
TCCTTCCTAACGCATCATAATCCATGA
back to top

protein sequence of Gchil1946.t1

>Gchil1946.t1 ID=Gchil1946.t1|Name=Gchil1946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=509bp
MSHSPTVAAAIKAGAASPVAGAAPHVLDAWLLVRRRALLTIPRRRYVVLT
QDHVLMIDSTPVLHLVDCQLSSNSSSSVIDLSPAPHCGIPYRIFADSPFQ
YSKWRAALQASASASIRRYYRVDASALIGVGVHGVIRRAYPQMPFRDESI
ASSASVSDYSLQTTHTRSLSIPRFRNKSLTPTPLRRPALGLSAPADSLPY
HPVTQPDPAMTVPASNSDKRLLRNVSHKTNPSSSRHEVQLPSSHPLSVAV
KTVSRTGDGTVSVASEILFAKARLDHFAIINVLDIFETVNEVHVVMEECM
GGSLTQYVHTNGPLSHHLARSLFSPLLKAVGYMHASGIVHWDICPNNVLF
LHPDLPLEPKLIDFSTSRPINPATGRVPSEHSIFFEKGKVSSLACASPEL
LTSKAHRYAAKADMWQLGCVLYFLLVGKLPFSNRYPQDASVANTILTFCK
LRSAERQDFLFSPSYVGNVHLKPQAKEIIMKLLCPNPRMRPNALQCLREF
SFLTHHNP*
back to top

mRNA from alignment at tig00004439_pilon:1262616..1264142-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1946.t1 ID=Gchil1946.t1|Name=Gchil1946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00004439_pilon:1262616..1264142- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCACAGTCCCACCGTGGCGGCCGCCATCAAGGCCGGCGCCGCGTC
GCCCGTCGCCGGCGCCGCGCCGCATGTGCTCGACGCCTGGCTGCTCGTGC
GCCGCCGCGCTTTGCTCACAATTCCCAGGCGTCGCTACGTCGTCCTCACG
CAGGACCACGTGCTCATGATTGACAGCACCCCCGTGCTGCACCTTGTTGA
CTGCCAGCTTAGCTCTAACTCCTCGTCCAGTGTCATCGACCTCTCGCCCG
CCCCCCACTGCGGCATTCCGTATCGCATCTTCGCCGACTCTCCATTCCAA
TATTCCAAGTGGAGAGCCGCCCTGCAGGCCAGCGCCTCCGCCTCCATTCG
CCGCTACTACCGCGTAGACGCTTCTGCGCTCATTGGCGTCGGCGTGCATG
GCGTCATTCGTCGCGCCTACCCGCAGATGCCCTTTCGGGACGAGTCCATC
GCCTCGTCTGCTTCCGTGTCCGACTACTCGCTGCAAACCACGCACACCAG
GTCTCTGTCCATCCCCCGCTTCCGCAATAAGTCCCTCACCCCCACTCCGC
TCCGCCGCCCCGCGCTCGGGCTCTCGGCCCCCGCCGACTCTTTGCCCTAC
CACCCTGTCACCCAGCCGGATCCTGCCATGACGGTGCCCGCCTCAAACAG
CGACAAACGTCTGCTCAGGAATGTTTCGCACAAGACGAATCCGTCGTCGT
CGCGTCACGAAGTGCAATTGCCTTCGTCACACCCGCTCTCCGTTGCCGTC
AAAACCGTGTCGCGCACCGGCGACGGCACCGTGTCCGTTGCGAGTGAAAT
TCTGTTCGCAAAGGCCCGATTGGATCACTTTGCCATCATCAATGTGCTCG
ACATCTTCGAGACCGTCAACGAGGTGCACGTCGTCATGGAGGAGTGCATG
GGCGGATCTCTCACCCAGTACGTGCACACCAATGGCCCGCTATCTCACCA
TTTGGCCCGATCGCTCTTCTCGCCCTTGCTGAAAGCCGTTGGCTACATGC
ATGCGTCGGGCATTGTGCATTGGGATATATGTCCAAACAATGTGCTCTTC
TTGCACCCCGATCTTCCTCTAGAGCCTAAATTAATTGACTTTTCTACATC
ACGCCCTATCAATCCTGCTACCGGCCGTGTGCCATCGGAGCACTCCATTT
TCTTCGAAAAGGGTAAGGTCTCATCGTTGGCTTGTGCATCGCCGGAGCTC
CTCACTTCGAAGGCCCATCGGTATGCAGCCAAGGCCGACATGTGGCAATT
GGGCTGCGTTCTCTACTTTCTGCTTGTTGGAAAGCTTCCGTTTTCGAATC
GATACCCCCAGGATGCTTCCGTCGCAAATACCATTCTCACCTTCTGCAAG
CTGCGAAGTGCTGAGCGGCAAGATTTCCTCTTCTCGCCATCTTATGTTGG
TAACGTTCATCTCAAGCCACAGGCAAAAGAAATCATCATGAAGCTTTTGT
GTCCAAATCCGCGCATGCGACCAAATGCGCTTCAATGTCTCCGAGAGTTC
TCCTTCCTAACGCATCATAATCCATGA
back to top

Coding sequence (CDS) from alignment at tig00004439_pilon:1262616..1264142-

>Gchil1946.t1 ID=Gchil1946.t1|Name=Gchil1946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1527bp|location=Sequence derived from alignment at tig00004439_pilon:1262616..1264142- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCACAGTCCCACCGTGGCGGCCGCCATCAAGGCCGGCGCCGCGTC
GCCCGTCGCCGGCGCCGCGCCGCATGTGCTCGACGCCTGGCTGCTCGTGC
GCCGCCGCGCTTTGCTCACAATTCCCAGGCGTCGCTACGTCGTCCTCACG
CAGGACCACGTGCTCATGATTGACAGCACCCCCGTGCTGCACCTTGTTGA
CTGCCAGCTTAGCTCTAACTCCTCGTCCAGTGTCATCGACCTCTCGCCCG
CCCCCCACTGCGGCATTCCGTATCGCATCTTCGCCGACTCTCCATTCCAA
TATTCCAAGTGGAGAGCCGCCCTGCAGGCCAGCGCCTCCGCCTCCATTCG
CCGCTACTACCGCGTAGACGCTTCTGCGCTCATTGGCGTCGGCGTGCATG
GCGTCATTCGTCGCGCCTACCCGCAGATGCCCTTTCGGGACGAGTCCATC
GCCTCGTCTGCTTCCGTGTCCGACTACTCGCTGCAAACCACGCACACCAG
GTCTCTGTCCATCCCCCGCTTCCGCAATAAGTCCCTCACCCCCACTCCGC
TCCGCCGCCCCGCGCTCGGGCTCTCGGCCCCCGCCGACTCTTTGCCCTAC
CACCCTGTCACCCAGCCGGATCCTGCCATGACGGTGCCCGCCTCAAACAG
CGACAAACGTCTGCTCAGGAATGTTTCGCACAAGACGAATCCGTCGTCGT
CGCGTCACGAAGTGCAATTGCCTTCGTCACACCCGCTCTCCGTTGCCGTC
AAAACCGTGTCGCGCACCGGCGACGGCACCGTGTCCGTTGCGAGTGAAAT
TCTGTTCGCAAAGGCCCGATTGGATCACTTTGCCATCATCAATGTGCTCG
ACATCTTCGAGACCGTCAACGAGGTGCACGTCGTCATGGAGGAGTGCATG
GGCGGATCTCTCACCCAGTACGTGCACACCAATGGCCCGCTATCTCACCA
TTTGGCCCGATCGCTCTTCTCGCCCTTGCTGAAAGCCGTTGGCTACATGC
ATGCGTCGGGCATTGTGCATTGGGATATATGTCCAAACAATGTGCTCTTC
TTGCACCCCGATCTTCCTCTAGAGCCTAAATTAATTGACTTTTCTACATC
ACGCCCTATCAATCCTGCTACCGGCCGTGTGCCATCGGAGCACTCCATTT
TCTTCGAAAAGGGTAAGGTCTCATCGTTGGCTTGTGCATCGCCGGAGCTC
CTCACTTCGAAGGCCCATCGGTATGCAGCCAAGGCCGACATGTGGCAATT
GGGCTGCGTTCTCTACTTTCTGCTTGTTGGAAAGCTTCCGTTTTCGAATC
GATACCCCCAGGATGCTTCCGTCGCAAATACCATTCTCACCTTCTGCAAG
CTGCGAAGTGCTGAGCGGCAAGATTTCCTCTTCTCGCCATCTTATGTTGG
TAACGTTCATCTCAAGCCACAGGCAAAAGAAATCATCATGAAGCTTTTGT
GTCCAAATCCGCGCATGCGACCAAATGCGCTTCAATGTCTCCGAGAGTTC
TCCTTCCTAACGCATCATAATCCATGA
back to top