Gchil1944.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1944.t1
Unique NameGchil1944.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1256901..1257773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog864702.OsccyDRAFT_2221
Preferred nametrmB
PFAMsMethyltransf_4
Max annot lvl1117|Cyanobacteria
KEGG koko:K03439
GOsGO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008176,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0106004,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234
Evalue4.61e-57
EggNOG OGsCOG0220@1|root,COG0220@2|Bacteria,1G312@1117|Cyanobacteria,1H9YT@1150|Oscillatoriales
EC2.1.1.33
DescriptionCatalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1944Gchil1944Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1256901..1257773 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1944.t1.stop1Gchil1944.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1256901..1256903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1944.t1.CDS1Gchil1944.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1256901..1257773 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1944.t1.exon1Gchil1944.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1256901..1257773 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1944.t1.start1Gchil1944.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1257771..1257773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1944.t1Gchil1944.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1256901..1257773 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1944.t1 ID=Gchil1944.t1|Name=Gchil1944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=291bp
MSRPGFAPPLSLIARPLRPVQQSPYLLRSRSMYRTTAAQLIQPPPAAAPQ
PGQVRVRQHLNPLARRWSQPVQLPQEWYSIAFRDVSLPLVVDVGVAKGRF
LLNMAKIQPQCNYLGIEIREPLVHQANRCAEQAGLGNLFYLAANANVSLC
SILDMCPQQVLRQLLIQFCDPWFKKRHAKRRMVNTALVEDIYHILQKSTN
RAASNGSHAVIQPRVFVQSDVLDVATEMTYLFDQHGGFARLQDQHDLRVD
HNGWLLNNPLGVPTEREIAVMKKGGSVYRALYEVDQLHNA*
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spliced messenger RNA

>Gchil1944.t1 ID=Gchil1944.t1|Name=Gchil1944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00004439_pilon:1256901..1257773- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGACCGGGTTTCGCTCCACCTCTGAGCCTCATCGCCCGTCCGCT
TCGACCCGTCCAGCAGTCCCCCTATCTCCTCCGATCGCGCTCCATGTACC
GCACAACGGCCGCACAGCTAATACAGCCGCCGCCAGCAGCCGCACCACAG
CCCGGTCAAGTTCGCGTCCGCCAGCATCTCAACCCTCTTGCGCGCCGGTG
GAGCCAGCCCGTACAGCTTCCCCAAGAGTGGTATTCCATTGCTTTTAGAG
ATGTTTCGCTCCCGCTCGTAGTTGATGTCGGTGTCGCAAAGGGGCGCTTT
TTGCTCAACATGGCCAAGATCCAGCCGCAATGCAATTATCTTGGAATCGA
GATTCGCGAGCCCCTGGTTCATCAGGCCAACCGCTGCGCTGAGCAGGCCG
GATTAGGTAATTTGTTTTATCTCGCTGCTAACGCCAACGTCTCTTTGTGT
TCCATTCTGGATATGTGTCCTCAGCAAGTGCTTCGACAGCTTCTTATTCA
GTTTTGCGACCCTTGGTTTAAGAAACGTCATGCAAAGAGAAGAATGGTCA
ACACTGCGCTTGTGGAAGATATTTATCACATCCTGCAAAAGTCCACAAAC
CGTGCTGCGTCCAATGGCTCCCACGCTGTCATACAGCCGCGTGTGTTTGT
CCAAAGCGATGTTTTGGACGTTGCCACTGAGATGACCTACCTTTTTGATC
AACATGGCGGATTTGCACGACTTCAAGATCAGCATGATTTGCGTGTTGAT
CACAATGGGTGGTTGCTTAACAATCCGCTCGGAGTTCCCACTGAGCGGGA
GATCGCTGTTATGAAAAAAGGAGGTTCTGTGTATCGCGCTTTGTATGAGG
TTGACCAACTTCACAACGCATGA
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protein sequence of Gchil1944.t1

>Gchil1944.t1 ID=Gchil1944.t1|Name=Gchil1944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=291bp
MSRPGFAPPLSLIARPLRPVQQSPYLLRSRSMYRTTAAQLIQPPPAAAPQ
PGQVRVRQHLNPLARRWSQPVQLPQEWYSIAFRDVSLPLVVDVGVAKGRF
LLNMAKIQPQCNYLGIEIREPLVHQANRCAEQAGLGNLFYLAANANVSLC
SILDMCPQQVLRQLLIQFCDPWFKKRHAKRRMVNTALVEDIYHILQKSTN
RAASNGSHAVIQPRVFVQSDVLDVATEMTYLFDQHGGFARLQDQHDLRVD
HNGWLLNNPLGVPTEREIAVMKKGGSVYRALYEVDQLHNA*
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mRNA from alignment at tig00004439_pilon:1256901..1257773-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1944.t1 ID=Gchil1944.t1|Name=Gchil1944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00004439_pilon:1256901..1257773- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGACCGGGTTTCGCTCCACCTCTGAGCCTCATCGCCCGTCCGCT
TCGACCCGTCCAGCAGTCCCCCTATCTCCTCCGATCGCGCTCCATGTACC
GCACAACGGCCGCACAGCTAATACAGCCGCCGCCAGCAGCCGCACCACAG
CCCGGTCAAGTTCGCGTCCGCCAGCATCTCAACCCTCTTGCGCGCCGGTG
GAGCCAGCCCGTACAGCTTCCCCAAGAGTGGTATTCCATTGCTTTTAGAG
ATGTTTCGCTCCCGCTCGTAGTTGATGTCGGTGTCGCAAAGGGGCGCTTT
TTGCTCAACATGGCCAAGATCCAGCCGCAATGCAATTATCTTGGAATCGA
GATTCGCGAGCCCCTGGTTCATCAGGCCAACCGCTGCGCTGAGCAGGCCG
GATTAGGTAATTTGTTTTATCTCGCTGCTAACGCCAACGTCTCTTTGTGT
TCCATTCTGGATATGTGTCCTCAGCAAGTGCTTCGACAGCTTCTTATTCA
GTTTTGCGACCCTTGGTTTAAGAAACGTCATGCAAAGAGAAGAATGGTCA
ACACTGCGCTTGTGGAAGATATTTATCACATCCTGCAAAAGTCCACAAAC
CGTGCTGCGTCCAATGGCTCCCACGCTGTCATACAGCCGCGTGTGTTTGT
CCAAAGCGATGTTTTGGACGTTGCCACTGAGATGACCTACCTTTTTGATC
AACATGGCGGATTTGCACGACTTCAAGATCAGCATGATTTGCGTGTTGAT
CACAATGGGTGGTTGCTTAACAATCCGCTCGGAGTTCCCACTGAGCGGGA
GATCGCTGTTATGAAAAAAGGAGGTTCTGTGTATCGCGCTTTGTATGAGG
TTGACCAACTTCACAACGCATGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1256901..1257773-

>Gchil1944.t1 ID=Gchil1944.t1|Name=Gchil1944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00004439_pilon:1256901..1257773- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGACCGGGTTTCGCTCCACCTCTGAGCCTCATCGCCCGTCCGCT
TCGACCCGTCCAGCAGTCCCCCTATCTCCTCCGATCGCGCTCCATGTACC
GCACAACGGCCGCACAGCTAATACAGCCGCCGCCAGCAGCCGCACCACAG
CCCGGTCAAGTTCGCGTCCGCCAGCATCTCAACCCTCTTGCGCGCCGGTG
GAGCCAGCCCGTACAGCTTCCCCAAGAGTGGTATTCCATTGCTTTTAGAG
ATGTTTCGCTCCCGCTCGTAGTTGATGTCGGTGTCGCAAAGGGGCGCTTT
TTGCTCAACATGGCCAAGATCCAGCCGCAATGCAATTATCTTGGAATCGA
GATTCGCGAGCCCCTGGTTCATCAGGCCAACCGCTGCGCTGAGCAGGCCG
GATTAGGTAATTTGTTTTATCTCGCTGCTAACGCCAACGTCTCTTTGTGT
TCCATTCTGGATATGTGTCCTCAGCAAGTGCTTCGACAGCTTCTTATTCA
GTTTTGCGACCCTTGGTTTAAGAAACGTCATGCAAAGAGAAGAATGGTCA
ACACTGCGCTTGTGGAAGATATTTATCACATCCTGCAAAAGTCCACAAAC
CGTGCTGCGTCCAATGGCTCCCACGCTGTCATACAGCCGCGTGTGTTTGT
CCAAAGCGATGTTTTGGACGTTGCCACTGAGATGACCTACCTTTTTGATC
AACATGGCGGATTTGCACGACTTCAAGATCAGCATGATTTGCGTGTTGAT
CACAATGGGTGGTTGCTTAACAATCCGCTCGGAGTTCCCACTGAGCGGGA
GATCGCTGTTATGAAAAAAGGAGGTTCTGTGTATCGCGCTTTGTATGAGG
TTGACCAACTTCACAACGCATGA
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