Gchil1943.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1943.t1
Unique NameGchil1943.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length500
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1254142..1255641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1042377.AFPJ01000042_gene1054
PFAMsUnbV_ASPIC,VCBS
Max annot lvl1236|Gammaproteobacteria
Evalue3.86e-42
EggNOG OGsCOG2931@1|root,COG3386@1|root,COG2931@2|Bacteria,COG3386@2|Bacteria,1R7ZV@1224|Proteobacteria,1RPUG@1236|Gammaproteobacteria,4653G@72275|Alteromonadaceae
DescriptionASPIC and UnbV
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1943Gchil1943Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1254142..1255641 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1943.t1.stop1Gchil1943.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1254142..1254144 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1943.t1.CDS1Gchil1943.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1254142..1255641 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1943.t1.exon1Gchil1943.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1254142..1255641 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1943.t1.start1Gchil1943.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1255639..1255641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1943.t1Gchil1943.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1254142..1255641 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1943.t1 ID=Gchil1943.t1|Name=Gchil1943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=500bp
MHVAITSVFFLLTFAVAQNSPSFVDVSRAVGLPNNPQKKYSGPAIADLDR
DGRPDLLFCYHDSFYAEIFFNQGNGRFIKSPWRSWKDNHGIVPVPVSIYN
NNMRFTISPGGNFGLNPSYPQMYEVNPERVVRNMSYAVQQVGGRGRTAMF
LDLSFTHTGFPDVLFMNGPSQSNPRQFGYENLFGQYKFRVPKGFESDDNW
YGSPIDVDNDRIMEVVTHYYKLAAYRVVGPWKFRDATEEIFPRNINRMGV
VAVAEIDYDNDGDFDLYVARTKSGDLKWVQGDSFYDYLLENVGGRFVDAT
AKARIPRGTLARGVTVGDFNNDGWMDIFVTQYLKADIMLLNNGDGTFRRV
DRLISRPFNVRGDNAVAFDYDDDGRLDLLSSQGDYHTEGKLGNYKLFRNV
MTLNRNRRFLKVRVGNAPDGIATALHAVVTVTVGGGRRKMIQRVGSPGAA
VSRSYIETLHFGLGTFSLADSVSVTYTNGYTVKRAGGAAGSTLIMGNVL*
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spliced messenger RNA

>Gchil1943.t1 ID=Gchil1943.t1|Name=Gchil1943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00004439_pilon:1254142..1255641- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGTCGCGATTACATCTGTATTCTTTTTGCTTACCTTTGCTGTCGC
GCAGAACTCGCCATCGTTCGTTGACGTTTCCCGGGCTGTTGGGCTTCCAA
ACAACCCTCAAAAAAAATATTCGGGACCCGCCATAGCCGATCTTGACCGC
GATGGGCGCCCAGACCTTCTCTTCTGCTATCACGATAGCTTCTACGCCGA
GATATTTTTCAACCAAGGAAATGGGCGTTTCATAAAGTCTCCGTGGCGAT
CATGGAAAGATAATCATGGCATTGTCCCAGTCCCTGTTTCTATTTATAAC
AACAATATGAGATTCACAATATCCCCCGGTGGTAATTTTGGTCTCAACCC
TTCTTACCCGCAGATGTACGAAGTTAATCCTGAGCGAGTTGTTCGGAACA
TGTCATATGCTGTTCAACAGGTAGGTGGTAGAGGCAGAACTGCCATGTTC
CTGGACCTTTCTTTCACACACACTGGCTTTCCGGACGTTCTTTTTATGAA
CGGCCCTTCGCAGAGCAATCCTCGCCAATTCGGTTACGAGAACTTATTTG
GGCAGTATAAGTTCCGCGTTCCGAAGGGGTTTGAGTCAGATGATAATTGG
TATGGCTCGCCTATTGATGTCGATAATGACCGCATCATGGAAGTTGTCAC
ACACTATTACAAGCTTGCTGCGTACAGAGTTGTCGGTCCGTGGAAGTTTC
GGGACGCTACCGAAGAGATCTTTCCGAGAAATATCAATCGAATGGGTGTT
GTGGCCGTAGCCGAAATCGACTACGATAACGATGGTGATTTTGACTTGTA
CGTGGCTAGAACCAAGTCAGGCGACCTCAAATGGGTACAGGGGGATTCGT
TTTACGACTACTTGCTGGAAAACGTGGGAGGTCGTTTCGTAGATGCCACT
GCCAAGGCGCGCATACCCCGTGGAACTTTGGCACGCGGTGTAACCGTTGG
CGATTTTAACAACGATGGATGGATGGATATATTTGTCACACAGTATCTCA
AAGCTGATATTATGCTGCTGAACAATGGAGACGGTACATTCAGAAGAGTG
GACCGCCTCATCTCACGACCTTTTAATGTGAGAGGTGACAACGCCGTCGC
GTTTGATTATGACGACGATGGTCGCTTGGACCTTTTATCTAGTCAAGGCG
ACTATCACACCGAGGGGAAGCTTGGAAACTATAAGTTGTTTCGAAACGTA
ATGACTCTCAACAGGAACCGTCGTTTCCTCAAAGTTCGTGTGGGGAATGC
TCCGGACGGCATTGCAACGGCTTTGCATGCTGTTGTTACTGTTACTGTCG
GGGGTGGCCGTCGAAAAATGATTCAGCGAGTTGGCTCGCCAGGTGCAGCC
GTTTCCAGGTCGTACATTGAAACTCTGCACTTCGGTCTTGGTACTTTTTC
GTTGGCTGATTCGGTATCTGTAACTTACACGAATGGTTATACGGTGAAAA
GAGCCGGCGGAGCAGCAGGAAGTACACTGATAATGGGAAATGTGCTGTAA
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protein sequence of Gchil1943.t1

>Gchil1943.t1 ID=Gchil1943.t1|Name=Gchil1943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=500bp
MHVAITSVFFLLTFAVAQNSPSFVDVSRAVGLPNNPQKKYSGPAIADLDR
DGRPDLLFCYHDSFYAEIFFNQGNGRFIKSPWRSWKDNHGIVPVPVSIYN
NNMRFTISPGGNFGLNPSYPQMYEVNPERVVRNMSYAVQQVGGRGRTAMF
LDLSFTHTGFPDVLFMNGPSQSNPRQFGYENLFGQYKFRVPKGFESDDNW
YGSPIDVDNDRIMEVVTHYYKLAAYRVVGPWKFRDATEEIFPRNINRMGV
VAVAEIDYDNDGDFDLYVARTKSGDLKWVQGDSFYDYLLENVGGRFVDAT
AKARIPRGTLARGVTVGDFNNDGWMDIFVTQYLKADIMLLNNGDGTFRRV
DRLISRPFNVRGDNAVAFDYDDDGRLDLLSSQGDYHTEGKLGNYKLFRNV
MTLNRNRRFLKVRVGNAPDGIATALHAVVTVTVGGGRRKMIQRVGSPGAA
VSRSYIETLHFGLGTFSLADSVSVTYTNGYTVKRAGGAAGSTLIMGNVL*
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mRNA from alignment at tig00004439_pilon:1254142..1255641-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1943.t1 ID=Gchil1943.t1|Name=Gchil1943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00004439_pilon:1254142..1255641- (Gracilaria chilensis NLEC103_M9 male)
ATGCATGTCGCGATTACATCTGTATTCTTTTTGCTTACCTTTGCTGTCGC
GCAGAACTCGCCATCGTTCGTTGACGTTTCCCGGGCTGTTGGGCTTCCAA
ACAACCCTCAAAAAAAATATTCGGGACCCGCCATAGCCGATCTTGACCGC
GATGGGCGCCCAGACCTTCTCTTCTGCTATCACGATAGCTTCTACGCCGA
GATATTTTTCAACCAAGGAAATGGGCGTTTCATAAAGTCTCCGTGGCGAT
CATGGAAAGATAATCATGGCATTGTCCCAGTCCCTGTTTCTATTTATAAC
AACAATATGAGATTCACAATATCCCCCGGTGGTAATTTTGGTCTCAACCC
TTCTTACCCGCAGATGTACGAAGTTAATCCTGAGCGAGTTGTTCGGAACA
TGTCATATGCTGTTCAACAGGTAGGTGGTAGAGGCAGAACTGCCATGTTC
CTGGACCTTTCTTTCACACACACTGGCTTTCCGGACGTTCTTTTTATGAA
CGGCCCTTCGCAGAGCAATCCTCGCCAATTCGGTTACGAGAACTTATTTG
GGCAGTATAAGTTCCGCGTTCCGAAGGGGTTTGAGTCAGATGATAATTGG
TATGGCTCGCCTATTGATGTCGATAATGACCGCATCATGGAAGTTGTCAC
ACACTATTACAAGCTTGCTGCGTACAGAGTTGTCGGTCCGTGGAAGTTTC
GGGACGCTACCGAAGAGATCTTTCCGAGAAATATCAATCGAATGGGTGTT
GTGGCCGTAGCCGAAATCGACTACGATAACGATGGTGATTTTGACTTGTA
CGTGGCTAGAACCAAGTCAGGCGACCTCAAATGGGTACAGGGGGATTCGT
TTTACGACTACTTGCTGGAAAACGTGGGAGGTCGTTTCGTAGATGCCACT
GCCAAGGCGCGCATACCCCGTGGAACTTTGGCACGCGGTGTAACCGTTGG
CGATTTTAACAACGATGGATGGATGGATATATTTGTCACACAGTATCTCA
AAGCTGATATTATGCTGCTGAACAATGGAGACGGTACATTCAGAAGAGTG
GACCGCCTCATCTCACGACCTTTTAATGTGAGAGGTGACAACGCCGTCGC
GTTTGATTATGACGACGATGGTCGCTTGGACCTTTTATCTAGTCAAGGCG
ACTATCACACCGAGGGGAAGCTTGGAAACTATAAGTTGTTTCGAAACGTA
ATGACTCTCAACAGGAACCGTCGTTTCCTCAAAGTTCGTGTGGGGAATGC
TCCGGACGGCATTGCAACGGCTTTGCATGCTGTTGTTACTGTTACTGTCG
GGGGTGGCCGTCGAAAAATGATTCAGCGAGTTGGCTCGCCAGGTGCAGCC
GTTTCCAGGTCGTACATTGAAACTCTGCACTTCGGTCTTGGTACTTTTTC
GTTGGCTGATTCGGTATCTGTAACTTACACGAATGGTTATACGGTGAAAA
GAGCCGGCGGAGCAGCAGGAAGTACACTGATAATGGGAAATGTGCTGTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1254142..1255641-

>Gchil1943.t1 ID=Gchil1943.t1|Name=Gchil1943.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1500bp|location=Sequence derived from alignment at tig00004439_pilon:1254142..1255641- (Gracilaria chilensis NLEC103_M9 male)
ATGCATGTCGCGATTACATCTGTATTCTTTTTGCTTACCTTTGCTGTCGC
GCAGAACTCGCCATCGTTCGTTGACGTTTCCCGGGCTGTTGGGCTTCCAA
ACAACCCTCAAAAAAAATATTCGGGACCCGCCATAGCCGATCTTGACCGC
GATGGGCGCCCAGACCTTCTCTTCTGCTATCACGATAGCTTCTACGCCGA
GATATTTTTCAACCAAGGAAATGGGCGTTTCATAAAGTCTCCGTGGCGAT
CATGGAAAGATAATCATGGCATTGTCCCAGTCCCTGTTTCTATTTATAAC
AACAATATGAGATTCACAATATCCCCCGGTGGTAATTTTGGTCTCAACCC
TTCTTACCCGCAGATGTACGAAGTTAATCCTGAGCGAGTTGTTCGGAACA
TGTCATATGCTGTTCAACAGGTAGGTGGTAGAGGCAGAACTGCCATGTTC
CTGGACCTTTCTTTCACACACACTGGCTTTCCGGACGTTCTTTTTATGAA
CGGCCCTTCGCAGAGCAATCCTCGCCAATTCGGTTACGAGAACTTATTTG
GGCAGTATAAGTTCCGCGTTCCGAAGGGGTTTGAGTCAGATGATAATTGG
TATGGCTCGCCTATTGATGTCGATAATGACCGCATCATGGAAGTTGTCAC
ACACTATTACAAGCTTGCTGCGTACAGAGTTGTCGGTCCGTGGAAGTTTC
GGGACGCTACCGAAGAGATCTTTCCGAGAAATATCAATCGAATGGGTGTT
GTGGCCGTAGCCGAAATCGACTACGATAACGATGGTGATTTTGACTTGTA
CGTGGCTAGAACCAAGTCAGGCGACCTCAAATGGGTACAGGGGGATTCGT
TTTACGACTACTTGCTGGAAAACGTGGGAGGTCGTTTCGTAGATGCCACT
GCCAAGGCGCGCATACCCCGTGGAACTTTGGCACGCGGTGTAACCGTTGG
CGATTTTAACAACGATGGATGGATGGATATATTTGTCACACAGTATCTCA
AAGCTGATATTATGCTGCTGAACAATGGAGACGGTACATTCAGAAGAGTG
GACCGCCTCATCTCACGACCTTTTAATGTGAGAGGTGACAACGCCGTCGC
GTTTGATTATGACGACGATGGTCGCTTGGACCTTTTATCTAGTCAAGGCG
ACTATCACACCGAGGGGAAGCTTGGAAACTATAAGTTGTTTCGAAACGTA
ATGACTCTCAACAGGAACCGTCGTTTCCTCAAAGTTCGTGTGGGGAATGC
TCCGGACGGCATTGCAACGGCTTTGCATGCTGTTGTTACTGTTACTGTCG
GGGGTGGCCGTCGAAAAATGATTCAGCGAGTTGGCTCGCCAGGTGCAGCC
GTTTCCAGGTCGTACATTGAAACTCTGCACTTCGGTCTTGGTACTTTTTC
GTTGGCTGATTCGGTATCTGTAACTTACACGAATGGTTATACGGTGAAAA
GAGCCGGCGGAGCAGCAGGAAGTACACTGATAATGGGAAATGTGCTGTAA
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