Gchil1942.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1942.t1
Unique NameGchil1942.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1248076..1248913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706265.1
PFAMsChloroa_b-bind
Max annot lvl2759|Eukaryota
KEGG koko:K08907
KEGG Pathwayko00196,map00196
Evalue1.19e-60
EggNOG OGs2CDPH@1|root,2SPER@2759|Eukaryota
DescriptionChlorophyll A-B binding protein
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1942Gchil1942Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1248076..1248913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1942.t1Gchil1942.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1248076..1248913 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1942.t1.stop1Gchil1942.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1248076..1248078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1942.t1.CDS1Gchil1942.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1248076..1248098 -
Gchil1942.t1.CDS2Gchil1942.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1248193..1248573 -
Gchil1942.t1.CDS3Gchil1942.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1248661..1248913 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1942.t1.exon1Gchil1942.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1248076..1248098 -
Gchil1942.t1.exon2Gchil1942.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1248193..1248573 -
Gchil1942.t1.exon3Gchil1942.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1248661..1248913 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1942.t1.intron1Gchil1942.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1248099..1248192 -
Gchil1942.t1.intron2Gchil1942.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1248574..1248660 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1942.t1.start1Gchil1942.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1248911..1248913 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1942.t1 ID=Gchil1942.t1|Name=Gchil1942.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=219bp
MIAFVSGFAGIPATRASAFNGASLFVRHAPVSTSRFTMEASKSVPFLPRP
AKLDGTMPGDVGFDPLGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEA
VYHLPNEMFSATNPLAAVGKVGWLPVIQILLFIAACEAGTSFKKVYEQKC
EDPGNYGFDPLNLAGTPEKKKRRQTSEIKNGRLAMIAIGGAIHHALLTNM
GLLEQIQAGQWFGGYYVH*
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spliced messenger RNA

>Gchil1942.t1 ID=Gchil1942.t1|Name=Gchil1942.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00004439_pilon:1248076..1248913- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCTTTCGTTTCTGGTTTCGCTGGTATTCCCGCCACTCGGGCGTC
CGCTTTCAATGGCGCCTCTCTCTTTGTGCGTCACGCCCCTGTCAGTACTT
CCCGTTTCACAATGGAGGCGAGCAAGTCGGTCCCGTTCTTGCCCAGGCCG
GCAAAGCTTGATGGAACAATGCCCGGCGACGTTGGCTTCGACCCGCTTGG
CTTCTCAGACATGTTTGACCTCAACTTCCTTCGGGAAGCTGAAGTGAAGC
ACGGTCGTATTTGCATGCTTGCCATCGTGGGATGGGTGTTCCCGGAAGCT
GTGTACCATCTTCCCAACGAAATGTTCTCTGCTACAAATCCACTCGCCGC
TGTGGGGAAGGTCGGATGGCTGCCAGTGATTCAGATTCTTCTGTTCATTG
CTGCTTGTGAAGCGGGCACCTCGTTCAAAAAGGTGTATGAACAGAAGTGT
GAAGACCCTGGAAACTATGGATTCGACCCTCTTAACCTTGCGGGCACGCC
CGAGAAGAAGAAGCGTCGACAAACTTCTGAGATCAAGAACGGCCGTCTTG
CAATGATCGCCATCGGAGGTGCTATTCACCATGCGCTTCTCACGAACATG
GGTTTGCTGGAACAAATCCAGGCTGGTCAGTGGTTTGGTGGGTACTATGT
TCATTAA
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protein sequence of Gchil1942.t1

>Gchil1942.t1 ID=Gchil1942.t1|Name=Gchil1942.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=219bp
MIAFVSGFAGIPATRASAFNGASLFVRHAPVSTSRFTMEASKSVPFLPRP
AKLDGTMPGDVGFDPLGFSDMFDLNFLREAEVKHGRICMLAIVGWVFPEA
VYHLPNEMFSATNPLAAVGKVGWLPVIQILLFIAACEAGTSFKKVYEQKC
EDPGNYGFDPLNLAGTPEKKKRRQTSEIKNGRLAMIAIGGAIHHALLTNM
GLLEQIQAGQWFGGYYVH*
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mRNA from alignment at tig00004439_pilon:1248076..1248913-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1942.t1 ID=Gchil1942.t1|Name=Gchil1942.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=838bp|location=Sequence derived from alignment at tig00004439_pilon:1248076..1248913- (Gracilaria chilensis NLEC103_M9 male)
ATGATTGCTTTCGTTTCTGGTTTCGCTGGTATTCCCGCCACTCGGGCGTC
CGCTTTCAATGGCGCCTCTCTCTTTGTGCGTCACGCCCCTGTCAGTACTT
CCCGTTTCACAATGGAGGCGAGCAAGTCGGTCCCGTTCTTGCCCAGGCCG
GCAAAGCTTGATGGAACAATGCCCGGCGACGTTGGCTTCGACCCGCTTGG
CTTCTCAGACATGTTTGACCTCAACTTCCTTCGGGAAGCTGAAGTGAAGC
ACGGTATGTTATCTCACTTTCGAGACCACATTCCGTTCAGCGGAAACAGC
AGCTAACTTGGGCGTTCTCTTTTGTTGGGCGTAAACACAGGTCGTATTTG
CATGCTTGCCATCGTGGGATGGGTGTTCCCGGAAGCTGTGTACCATCTTC
CCAACGAAATGTTCTCTGCTACAAATCCACTCGCCGCTGTGGGGAAGGTC
GGATGGCTGCCAGTGATTCAGATTCTTCTGTTCATTGCTGCTTGTGAAGC
GGGCACCTCGTTCAAAAAGGTGTATGAACAGAAGTGTGAAGACCCTGGAA
ACTATGGATTCGACCCTCTTAACCTTGCGGGCACGCCCGAGAAGAAGAAG
CGTCGACAAACTTCTGAGATCAAGAACGGCCGTCTTGCAATGATCGCCAT
CGGAGGTGCTATTCACCATGCGCTTCTCACGAACATGGGTTTGCTGGAAC
AAATCCAGGCTGGTCAGTGGTGTAAGTTTCAAATTCGTGTTTGCTTTTCA
CGCCTAAAGCGATTACTGACTCAACATGCATTGTCCTTATCTGTGTCTGT
CTGTCTAAACATCAGTTGGTGGGTACTATGTTCATTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1248076..1248913-

>Gchil1942.t1 ID=Gchil1942.t1|Name=Gchil1942.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00004439_pilon:1248076..1248913- (Gracilaria chilensis NLEC103_M9 male)
ATGATTGCTTTCGTTTCTGGTTTCGCTGGTATTCCCGCCACTCGGGCGTC
CGCTTTCAATGGCGCCTCTCTCTTTGTGCGTCACGCCCCTGTCAGTACTT
CCCGTTTCACAATGGAGGCGAGCAAGTCGGTCCCGTTCTTGCCCAGGCCG
GCAAAGCTTGATGGAACAATGCCCGGCGACGTTGGCTTCGACCCGCTTGG
CTTCTCAGACATGTTTGACCTCAACTTCCTTCGGGAAGCTGAAGTGAAGC
ACGGTCGTATTTGCATGCTTGCCATCGTGGGATGGGTGTTCCCGGAAGCT
GTGTACCATCTTCCCAACGAAATGTTCTCTGCTACAAATCCACTCGCCGC
TGTGGGGAAGGTCGGATGGCTGCCAGTGATTCAGATTCTTCTGTTCATTG
CTGCTTGTGAAGCGGGCACCTCGTTCAAAAAGGTGTATGAACAGAAGTGT
GAAGACCCTGGAAACTATGGATTCGACCCTCTTAACCTTGCGGGCACGCC
CGAGAAGAAGAAGCGTCGACAAACTTCTGAGATCAAGAACGGCCGTCTTG
CAATGATCGCCATCGGAGGTGCTATTCACCATGCGCTTCTCACGAACATG
GGTTTGCTGGAACAAATCCAGGCTGGTCAGTGGTTTGGTGGGTACTATGT
TCATTAA
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