Gchil1941.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1941.t1
Unique NameGchil1941.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1246992..1247714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122222.AXWR01000007_gene389
PFAMsPribosyltran
Max annot lvl1297|Deinococcus-Thermus
KEGG koko:K07101
Evalue1.67e-44
EggNOG OGsCOG2236@1|root,COG2236@2|Bacteria,1WJRW@1297|Deinococcus-Thermus
DescriptionPhosphoribosyl transferase domain
COG categoryF
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1941Gchil1941Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1246992..1247714 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1941.t1.start1Gchil1941.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1246992..1246994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1941.t1.CDS1Gchil1941.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1246992..1247714 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1941.t1.exon1Gchil1941.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1246992..1247714 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1941.t1.stop1Gchil1941.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1247712..1247714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1941.t1Gchil1941.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1246992..1247714 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1941.t1 ID=Gchil1941.t1|Name=Gchil1941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=241bp
MHAPCFVTSASFGVCYSPFNRYLTACRPHRPLNRPSCARVAPKAVTPSNG
AISTTPRRYEGVSWSSVENMCKDIAQQAHGESFDAVLAVTRGGLVPAVLL
CEQFQLRNLLSATVMFYADNGEQFFGMSEPRFLAFPTVDALQGRRVLIVD
DVWDSGRTAQAVRNRVKRAKANEVKVAVLHYKPGKNVFPGIEPDFYSAVT
SDWVVYPWERASPTTPHVSFEVEEACTPVDSVDNSASVGS*
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spliced messenger RNA

>Gchil1941.t1 ID=Gchil1941.t1|Name=Gchil1941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00004439_pilon:1246992..1247714+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGCGCCTTGTTTCGTGACCTCTGCATCATTTGGCGTTTGTTACTC
CCCGTTTAATCGATATCTCACCGCTTGCCGACCCCACCGCCCACTGAACC
GACCGTCGTGTGCTCGCGTCGCGCCCAAGGCCGTCACCCCATCCAATGGC
GCCATTTCAACCACTCCTCGTCGATACGAAGGGGTGAGCTGGTCCTCCGT
CGAAAATATGTGCAAGGACATTGCGCAACAAGCCCACGGTGAGAGCTTTG
ACGCCGTTCTAGCCGTCACAAGAGGCGGCCTCGTACCAGCCGTTCTTCTC
TGTGAGCAGTTTCAACTTCGCAACCTCCTCTCGGCCACAGTCATGTTTTA
CGCCGATAACGGTGAGCAATTCTTCGGAATGTCCGAACCGAGATTTCTGG
CGTTTCCCACCGTTGACGCTCTGCAAGGACGACGCGTGCTTATTGTGGAT
GATGTGTGGGACAGCGGACGAACCGCACAGGCTGTACGAAATCGCGTCAA
GCGTGCTAAAGCCAACGAAGTCAAGGTGGCCGTGTTGCATTACAAGCCTG
GAAAGAATGTTTTTCCTGGTATAGAGCCGGACTTTTATTCCGCTGTGACG
AGCGACTGGGTTGTGTATCCATGGGAAAGGGCAAGCCCCACCACGCCCCA
CGTCAGTTTTGAAGTTGAGGAAGCTTGCACACCCGTGGACTCTGTCGATA
ACTCCGCGTCGGTTGGCAGCTGA
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protein sequence of Gchil1941.t1

>Gchil1941.t1 ID=Gchil1941.t1|Name=Gchil1941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=241bp
MHAPCFVTSASFGVCYSPFNRYLTACRPHRPLNRPSCARVAPKAVTPSNG
AISTTPRRYEGVSWSSVENMCKDIAQQAHGESFDAVLAVTRGGLVPAVLL
CEQFQLRNLLSATVMFYADNGEQFFGMSEPRFLAFPTVDALQGRRVLIVD
DVWDSGRTAQAVRNRVKRAKANEVKVAVLHYKPGKNVFPGIEPDFYSAVT
SDWVVYPWERASPTTPHVSFEVEEACTPVDSVDNSASVGS*
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mRNA from alignment at tig00004439_pilon:1246992..1247714+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1941.t1 ID=Gchil1941.t1|Name=Gchil1941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00004439_pilon:1246992..1247714+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATGCGCCTTGTTTCGTGACCTCTGCATCATTTGGCGTTTGTTACTC
CCCGTTTAATCGATATCTCACCGCTTGCCGACCCCACCGCCCACTGAACC
GACCGTCGTGTGCTCGCGTCGCGCCCAAGGCCGTCACCCCATCCAATGGC
GCCATTTCAACCACTCCTCGTCGATACGAAGGGGTGAGCTGGTCCTCCGT
CGAAAATATGTGCAAGGACATTGCGCAACAAGCCCACGGTGAGAGCTTTG
ACGCCGTTCTAGCCGTCACAAGAGGCGGCCTCGTACCAGCCGTTCTTCTC
TGTGAGCAGTTTCAACTTCGCAACCTCCTCTCGGCCACAGTCATGTTTTA
CGCCGATAACGGTGAGCAATTCTTCGGAATGTCCGAACCGAGATTTCTGG
CGTTTCCCACCGTTGACGCTCTGCAAGGACGACGCGTGCTTATTGTGGAT
GATGTGTGGGACAGCGGACGAACCGCACAGGCTGTACGAAATCGCGTCAA
GCGTGCTAAAGCCAACGAAGTCAAGGTGGCCGTGTTGCATTACAAGCCTG
GAAAGAATGTTTTTCCTGGTATAGAGCCGGACTTTTATTCCGCTGTGACG
AGCGACTGGGTTGTGTATCCATGGGAAAGGGCAAGCCCCACCACGCCCCA
CGTCAGTTTTGAAGTTGAGGAAGCTTGCACACCCGTGGACTCTGTCGATA
ACTCCGCGTCGGTTGGCAGCTGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1246992..1247714+

>Gchil1941.t1 ID=Gchil1941.t1|Name=Gchil1941.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00004439_pilon:1246992..1247714+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATGCGCCTTGTTTCGTGACCTCTGCATCATTTGGCGTTTGTTACTC
CCCGTTTAATCGATATCTCACCGCTTGCCGACCCCACCGCCCACTGAACC
GACCGTCGTGTGCTCGCGTCGCGCCCAAGGCCGTCACCCCATCCAATGGC
GCCATTTCAACCACTCCTCGTCGATACGAAGGGGTGAGCTGGTCCTCCGT
CGAAAATATGTGCAAGGACATTGCGCAACAAGCCCACGGTGAGAGCTTTG
ACGCCGTTCTAGCCGTCACAAGAGGCGGCCTCGTACCAGCCGTTCTTCTC
TGTGAGCAGTTTCAACTTCGCAACCTCCTCTCGGCCACAGTCATGTTTTA
CGCCGATAACGGTGAGCAATTCTTCGGAATGTCCGAACCGAGATTTCTGG
CGTTTCCCACCGTTGACGCTCTGCAAGGACGACGCGTGCTTATTGTGGAT
GATGTGTGGGACAGCGGACGAACCGCACAGGCTGTACGAAATCGCGTCAA
GCGTGCTAAAGCCAACGAAGTCAAGGTGGCCGTGTTGCATTACAAGCCTG
GAAAGAATGTTTTTCCTGGTATAGAGCCGGACTTTTATTCCGCTGTGACG
AGCGACTGGGTTGTGTATCCATGGGAAAGGGCAAGCCCCACCACGCCCCA
CGTCAGTTTTGAAGTTGAGGAAGCTTGCACACCCGTGGACTCTGTCGATA
ACTCCGCGTCGGTTGGCAGCTGA
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