Gchil1940.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1940.t1
Unique Name	Gchil1940.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	364

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1244857..1245948 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706294.1
PFAMs	TPT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15281
KEGG TC	2.A.7.15
GOs	GO:0003674,GO:0005215,GO:0005338,GO:0006810,GO:0008150,GO:0015165,GO:0015780,GO:0015931,GO:0015932,GO:0022857,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0090481,GO:1901264,GO:1901505
Evalue	1.57e-57
EggNOG OGs	COG5070@1\|root,KOG1444@2759\|Eukaryota
Description	nucleotide-sugar transmembrane transporter activity
COG category	GOU
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1940	Gchil1940	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 1244857..1245948 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1940.t1.start1	Gchil1940.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 1244857..1244859 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1940.t1.CDS1	Gchil1940.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1244857..1245948 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1940.t1.exon1	Gchil1940.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1244857..1245948 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1940.t1.stop1	Gchil1940.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 1245946..1245948 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1940.t1	Gchil1940.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 1244857..1245948 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:1244857..1245948+
coding sequence from alignment at tig00004439_pilon:1244857..1245948+

mRNA sequence

>Gchil1940.t1 ID=Gchil1940.t1|Name=Gchil1940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=364bp
MAPSTAAAPDASMRRVAAALTFFCASSLGAIFINKMCLTHFNFNYPSSLM
ALQGAVTIVLLSLLSRVAPSLVSIVSLKSSDYYRLLPCTLFFVANVTVGL
SALSRVNIPMFSAFRRLTVLFVMAAEYVMLHRTHAPAVVISVVVLTFGAF
VSALGDVTFTLVGYALVFLNNALTAAYLASIKRVMTDLHLDPTSLLYYTN
VLGFPIVLCIALFTGDTQSAIYRYHTDPNLRDSPAFLTALCFVAISAFCV
NLSTTICTHITSPLTTSVAGQVKNVLQSFLGFFSWGYVPTPLNVVGLLIA
LAGQISFAIFKHAHAKSLKTSSSSEPLAHHPQPHHNHQTVDTALLNPATH
VSSRPSSKSDSNS*

spliced messenger RNA

>Gchil1940.t1 ID=Gchil1940.t1|Name=Gchil1940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00004439_pilon:1244857..1245948+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCATCCACCGCTGCTGCGCCGGATGCTTCGATGCGTCGCGTCGC
TGCCGCCCTCACCTTCTTCTGCGCCAGCTCGTTGGGCGCTATCTTCATCA
ACAAGATGTGTCTCACACACTTCAACTTCAACTATCCGTCCTCGCTCATG
GCGCTACAGGGCGCCGTCACCATCGTCTTGCTCTCGCTTCTGTCGCGTGT
GGCGCCCTCGCTCGTGTCCATCGTCTCGCTCAAATCCTCCGACTACTACC
GTCTGCTCCCTTGCACCCTATTCTTCGTGGCAAACGTCACTGTCGGCCTT
AGCGCTTTGTCGCGCGTCAACATTCCTATGTTTTCTGCATTCCGCAGACT
CACTGTGCTTTTCGTTATGGCCGCCGAGTACGTCATGTTGCATCGCACCC
ATGCCCCAGCCGTCGTCATCTCCGTCGTCGTGCTCACGTTTGGCGCCTTT
GTGTCCGCTCTGGGCGACGTAACCTTCACGCTTGTCGGCTACGCCCTCGT
GTTTCTAAACAACGCTCTAACCGCAGCCTATCTGGCCTCCATCAAGCGTG
TCATGACCGATCTGCACCTGGACCCCACCTCGCTGCTGTACTACACCAAC
GTGCTGGGCTTTCCCATCGTCCTCTGCATTGCGCTCTTCACCGGCGACAC
GCAAAGTGCAATCTACCGCTACCACACCGATCCCAATCTGCGTGACTCGC
CCGCCTTTCTCACCGCGCTTTGCTTCGTCGCCATCTCCGCCTTTTGCGTC
AATCTCTCCACCACAATCTGTACCCACATCACCTCCCCGCTCACCACATC
CGTCGCCGGTCAGGTCAAGAACGTTCTGCAGTCCTTCTTGGGCTTCTTCT
CATGGGGCTACGTTCCTACCCCGCTCAACGTCGTCGGCTTGCTCATCGCC
CTGGCCGGCCAGATAAGTTTTGCCATTTTCAAGCATGCGCACGCCAAGTC
TCTCAAGACATCTTCCTCATCGGAGCCGCTTGCTCATCACCCCCAGCCAC
ACCACAACCATCAAACCGTCGATACTGCCCTGCTCAACCCTGCCACACAC
GTCAGCTCGAGGCCTTCGTCCAAATCCGATTCCAACTCATGA

protein sequence of Gchil1940.t1

>Gchil1940.t1 ID=Gchil1940.t1|Name=Gchil1940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=364bp
MAPSTAAAPDASMRRVAAALTFFCASSLGAIFINKMCLTHFNFNYPSSLM
ALQGAVTIVLLSLLSRVAPSLVSIVSLKSSDYYRLLPCTLFFVANVTVGL
SALSRVNIPMFSAFRRLTVLFVMAAEYVMLHRTHAPAVVISVVVLTFGAF
VSALGDVTFTLVGYALVFLNNALTAAYLASIKRVMTDLHLDPTSLLYYTN
VLGFPIVLCIALFTGDTQSAIYRYHTDPNLRDSPAFLTALCFVAISAFCV
NLSTTICTHITSPLTTSVAGQVKNVLQSFLGFFSWGYVPTPLNVVGLLIA
LAGQISFAIFKHAHAKSLKTSSSSEPLAHHPQPHHNHQTVDTALLNPATH
VSSRPSSKSDSNS*

mRNA from alignment at tig00004439_pilon:1244857..1245948+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1940.t1 ID=Gchil1940.t1|Name=Gchil1940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00004439_pilon:1244857..1245948+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCATCCACCGCTGCTGCGCCGGATGCTTCGATGCGTCGCGTCGC
TGCCGCCCTCACCTTCTTCTGCGCCAGCTCGTTGGGCGCTATCTTCATCA
ACAAGATGTGTCTCACACACTTCAACTTCAACTATCCGTCCTCGCTCATG
GCGCTACAGGGCGCCGTCACCATCGTCTTGCTCTCGCTTCTGTCGCGTGT
GGCGCCCTCGCTCGTGTCCATCGTCTCGCTCAAATCCTCCGACTACTACC
GTCTGCTCCCTTGCACCCTATTCTTCGTGGCAAACGTCACTGTCGGCCTT
AGCGCTTTGTCGCGCGTCAACATTCCTATGTTTTCTGCATTCCGCAGACT
CACTGTGCTTTTCGTTATGGCCGCCGAGTACGTCATGTTGCATCGCACCC
ATGCCCCAGCCGTCGTCATCTCCGTCGTCGTGCTCACGTTTGGCGCCTTT
GTGTCCGCTCTGGGCGACGTAACCTTCACGCTTGTCGGCTACGCCCTCGT
GTTTCTAAACAACGCTCTAACCGCAGCCTATCTGGCCTCCATCAAGCGTG
TCATGACCGATCTGCACCTGGACCCCACCTCGCTGCTGTACTACACCAAC
GTGCTGGGCTTTCCCATCGTCCTCTGCATTGCGCTCTTCACCGGCGACAC
GCAAAGTGCAATCTACCGCTACCACACCGATCCCAATCTGCGTGACTCGC
CCGCCTTTCTCACCGCGCTTTGCTTCGTCGCCATCTCCGCCTTTTGCGTC
AATCTCTCCACCACAATCTGTACCCACATCACCTCCCCGCTCACCACATC
CGTCGCCGGTCAGGTCAAGAACGTTCTGCAGTCCTTCTTGGGCTTCTTCT
CATGGGGCTACGTTCCTACCCCGCTCAACGTCGTCGGCTTGCTCATCGCC
CTGGCCGGCCAGATAAGTTTTGCCATTTTCAAGCATGCGCACGCCAAGTC
TCTCAAGACATCTTCCTCATCGGAGCCGCTTGCTCATCACCCCCAGCCAC
ACCACAACCATCAAACCGTCGATACTGCCCTGCTCAACCCTGCCACACAC
GTCAGCTCGAGGCCTTCGTCCAAATCCGATTCCAACTCATGA

Coding sequence (CDS) from alignment at tig00004439_pilon:1244857..1245948+

>Gchil1940.t1 ID=Gchil1940.t1|Name=Gchil1940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00004439_pilon:1244857..1245948+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCATCCACCGCTGCTGCGCCGGATGCTTCGATGCGTCGCGTCGC
TGCCGCCCTCACCTTCTTCTGCGCCAGCTCGTTGGGCGCTATCTTCATCA
ACAAGATGTGTCTCACACACTTCAACTTCAACTATCCGTCCTCGCTCATG
GCGCTACAGGGCGCCGTCACCATCGTCTTGCTCTCGCTTCTGTCGCGTGT
GGCGCCCTCGCTCGTGTCCATCGTCTCGCTCAAATCCTCCGACTACTACC
GTCTGCTCCCTTGCACCCTATTCTTCGTGGCAAACGTCACTGTCGGCCTT
AGCGCTTTGTCGCGCGTCAACATTCCTATGTTTTCTGCATTCCGCAGACT
CACTGTGCTTTTCGTTATGGCCGCCGAGTACGTCATGTTGCATCGCACCC
ATGCCCCAGCCGTCGTCATCTCCGTCGTCGTGCTCACGTTTGGCGCCTTT
GTGTCCGCTCTGGGCGACGTAACCTTCACGCTTGTCGGCTACGCCCTCGT
GTTTCTAAACAACGCTCTAACCGCAGCCTATCTGGCCTCCATCAAGCGTG
TCATGACCGATCTGCACCTGGACCCCACCTCGCTGCTGTACTACACCAAC
GTGCTGGGCTTTCCCATCGTCCTCTGCATTGCGCTCTTCACCGGCGACAC
GCAAAGTGCAATCTACCGCTACCACACCGATCCCAATCTGCGTGACTCGC
CCGCCTTTCTCACCGCGCTTTGCTTCGTCGCCATCTCCGCCTTTTGCGTC
AATCTCTCCACCACAATCTGTACCCACATCACCTCCCCGCTCACCACATC
CGTCGCCGGTCAGGTCAAGAACGTTCTGCAGTCCTTCTTGGGCTTCTTCT
CATGGGGCTACGTTCCTACCCCGCTCAACGTCGTCGGCTTGCTCATCGCC
CTGGCCGGCCAGATAAGTTTTGCCATTTTCAAGCATGCGCACGCCAAGTC
TCTCAAGACATCTTCCTCATCGGAGCCGCTTGCTCATCACCCCCAGCCAC
ACCACAACCATCAAACCGTCGATACTGCCCTGCTCAACCCTGCCACACAC
GTCAGCTCGAGGCCTTCGTCCAAATCCGATTCCAACTCATGA