Gchil1939.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1939.t1
Unique NameGchil1939.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1242652..1243707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705663.1
PFAMsArsA_ATPase
Max annot lvl2759|Eukaryota
KEGG koko:K01551
KEGG TC3.A.19.1,3.A.21.1,3.A.4.1
Evalue3.94e-120
EggNOG OGsCOG0003@1|root,KOG2825@2759|Eukaryota
EC3.6.3.16
DescriptionATPase activity
COG categoryP
BRITEko00000,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1939Gchil1939Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1242652..1243707 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1939.t1.stop1Gchil1939.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1242652..1242654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1939.t1.CDS1Gchil1939.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1242652..1243707 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1939.t1.exon1Gchil1939.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1242652..1243707 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1939.t1.start1Gchil1939.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1243705..1243707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1939.t1Gchil1939.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1242652..1243707 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1939.t1 ID=Gchil1939.t1|Name=Gchil1939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=352bp
MSAAVATAFADRGQTTLIVSTDPAHSLSDAFGQSVSGGNPVAVMGIDNLY
AQEVDPHSMKATFSMMQQMDGARGMDQMGLDDLNSLFETIPPGFDEAVAL
VEIIKYIEADADYAKFERIVFDTAPTGHTLRLLALPDFLNGFFGKLISMK
SKFGNVMSQFKGMLGGGADASLDSSVEDMEELKRSMNMVRELFRDEVQTE
FIVATIPNMMAIAESKRLLDELNKESIPVRHLFVNHVQPENEHCSFCAAR
FKEQTLNMRQLEHQFAALQISTVQSFDKEIKGAAALRAMSAQLFPQTPEE
VADMARLAEQSAGTQVEGDSRASSSSSSSSSSSSSSSSSTSPPRAKAELV
E*
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spliced messenger RNA

>Gchil1939.t1 ID=Gchil1939.t1|Name=Gchil1939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004439_pilon:1242652..1243707- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCGCAGTGGCCACGGCGTTTGCCGACCGCGGACAGACCACGTT
GATCGTGTCCACCGACCCGGCACACTCGCTGTCCGACGCGTTTGGGCAGA
GCGTGTCTGGTGGAAACCCAGTGGCCGTCATGGGCATCGACAACCTGTAC
GCGCAGGAGGTGGACCCACACTCCATGAAGGCCACGTTCAGCATGATGCA
GCAAATGGATGGCGCGCGCGGCATGGACCAAATGGGGCTGGACGACCTCA
ACTCGCTGTTCGAGACCATTCCGCCAGGCTTTGACGAGGCGGTGGCGCTG
GTGGAGATCATCAAGTACATTGAGGCTGACGCCGACTATGCCAAGTTTGA
GCGCATCGTGTTTGACACGGCGCCTACGGGACATACGCTACGTTTGCTGG
CGCTGCCCGACTTTCTCAACGGCTTTTTCGGCAAGCTCATCTCTATGAAG
TCAAAGTTTGGCAACGTGATGAGTCAGTTCAAGGGCATGCTGGGCGGCGG
GGCGGACGCGTCGCTGGACAGCTCGGTGGAGGACATGGAGGAGCTCAAGC
GCTCAATGAACATGGTGCGCGAGCTGTTCCGCGACGAGGTGCAAACGGAG
TTCATCGTGGCCACCATCCCCAACATGATGGCCATCGCCGAGTCCAAGCG
GCTGCTGGACGAGCTCAACAAGGAGAGCATCCCGGTGCGACACTTGTTTG
TGAACCACGTGCAACCGGAGAACGAGCATTGCTCGTTCTGCGCCGCGCGC
TTCAAGGAGCAGACGCTCAACATGCGCCAGCTGGAGCACCAGTTTGCGGC
GCTGCAGATCTCCACCGTGCAGAGCTTCGACAAGGAGATCAAGGGCGCGG
CCGCGCTGCGCGCCATGAGCGCGCAGCTGTTCCCGCAGACACCCGAGGAG
GTGGCCGACATGGCACGTCTCGCCGAGCAAAGCGCTGGCACGCAGGTAGA
AGGCGACTCGCGCGCGTCGTCGTCGTCGTCGTCGTCGTCGTCTTCGTCGT
CGTCATCGTCGTCGTCGACATCGCCGCCGCGCGCCAAGGCGGAATTGGTG
GAGTGA
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protein sequence of Gchil1939.t1

>Gchil1939.t1 ID=Gchil1939.t1|Name=Gchil1939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=352bp
MSAAVATAFADRGQTTLIVSTDPAHSLSDAFGQSVSGGNPVAVMGIDNLY
AQEVDPHSMKATFSMMQQMDGARGMDQMGLDDLNSLFETIPPGFDEAVAL
VEIIKYIEADADYAKFERIVFDTAPTGHTLRLLALPDFLNGFFGKLISMK
SKFGNVMSQFKGMLGGGADASLDSSVEDMEELKRSMNMVRELFRDEVQTE
FIVATIPNMMAIAESKRLLDELNKESIPVRHLFVNHVQPENEHCSFCAAR
FKEQTLNMRQLEHQFAALQISTVQSFDKEIKGAAALRAMSAQLFPQTPEE
VADMARLAEQSAGTQVEGDSRASSSSSSSSSSSSSSSSSTSPPRAKAELV
E*
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mRNA from alignment at tig00004439_pilon:1242652..1243707-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1939.t1 ID=Gchil1939.t1|Name=Gchil1939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004439_pilon:1242652..1243707- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCCGCAGTGGCCACGGCGTTTGCCGACCGCGGACAGACCACGTT
GATCGTGTCCACCGACCCGGCACACTCGCTGTCCGACGCGTTTGGGCAGA
GCGTGTCTGGTGGAAACCCAGTGGCCGTCATGGGCATCGACAACCTGTAC
GCGCAGGAGGTGGACCCACACTCCATGAAGGCCACGTTCAGCATGATGCA
GCAAATGGATGGCGCGCGCGGCATGGACCAAATGGGGCTGGACGACCTCA
ACTCGCTGTTCGAGACCATTCCGCCAGGCTTTGACGAGGCGGTGGCGCTG
GTGGAGATCATCAAGTACATTGAGGCTGACGCCGACTATGCCAAGTTTGA
GCGCATCGTGTTTGACACGGCGCCTACGGGACATACGCTACGTTTGCTGG
CGCTGCCCGACTTTCTCAACGGCTTTTTCGGCAAGCTCATCTCTATGAAG
TCAAAGTTTGGCAACGTGATGAGTCAGTTCAAGGGCATGCTGGGCGGCGG
GGCGGACGCGTCGCTGGACAGCTCGGTGGAGGACATGGAGGAGCTCAAGC
GCTCAATGAACATGGTGCGCGAGCTGTTCCGCGACGAGGTGCAAACGGAG
TTCATCGTGGCCACCATCCCCAACATGATGGCCATCGCCGAGTCCAAGCG
GCTGCTGGACGAGCTCAACAAGGAGAGCATCCCGGTGCGACACTTGTTTG
TGAACCACGTGCAACCGGAGAACGAGCATTGCTCGTTCTGCGCCGCGCGC
TTCAAGGAGCAGACGCTCAACATGCGCCAGCTGGAGCACCAGTTTGCGGC
GCTGCAGATCTCCACCGTGCAGAGCTTCGACAAGGAGATCAAGGGCGCGG
CCGCGCTGCGCGCCATGAGCGCGCAGCTGTTCCCGCAGACACCCGAGGAG
GTGGCCGACATGGCACGTCTCGCCGAGCAAAGCGCTGGCACGCAGGTAGA
AGGCGACTCGCGCGCGTCGTCGTCGTCGTCGTCGTCGTCGTCTTCGTCGT
CGTCATCGTCGTCGTCGACATCGCCGCCGCGCGCCAAGGCGGAATTGGTG
GAGTGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1242652..1243707-

>Gchil1939.t1 ID=Gchil1939.t1|Name=Gchil1939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00004439_pilon:1242652..1243707- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCCGCAGTGGCCACGGCGTTTGCCGACCGCGGACAGACCACGTT
GATCGTGTCCACCGACCCGGCACACTCGCTGTCCGACGCGTTTGGGCAGA
GCGTGTCTGGTGGAAACCCAGTGGCCGTCATGGGCATCGACAACCTGTAC
GCGCAGGAGGTGGACCCACACTCCATGAAGGCCACGTTCAGCATGATGCA
GCAAATGGATGGCGCGCGCGGCATGGACCAAATGGGGCTGGACGACCTCA
ACTCGCTGTTCGAGACCATTCCGCCAGGCTTTGACGAGGCGGTGGCGCTG
GTGGAGATCATCAAGTACATTGAGGCTGACGCCGACTATGCCAAGTTTGA
GCGCATCGTGTTTGACACGGCGCCTACGGGACATACGCTACGTTTGCTGG
CGCTGCCCGACTTTCTCAACGGCTTTTTCGGCAAGCTCATCTCTATGAAG
TCAAAGTTTGGCAACGTGATGAGTCAGTTCAAGGGCATGCTGGGCGGCGG
GGCGGACGCGTCGCTGGACAGCTCGGTGGAGGACATGGAGGAGCTCAAGC
GCTCAATGAACATGGTGCGCGAGCTGTTCCGCGACGAGGTGCAAACGGAG
TTCATCGTGGCCACCATCCCCAACATGATGGCCATCGCCGAGTCCAAGCG
GCTGCTGGACGAGCTCAACAAGGAGAGCATCCCGGTGCGACACTTGTTTG
TGAACCACGTGCAACCGGAGAACGAGCATTGCTCGTTCTGCGCCGCGCGC
TTCAAGGAGCAGACGCTCAACATGCGCCAGCTGGAGCACCAGTTTGCGGC
GCTGCAGATCTCCACCGTGCAGAGCTTCGACAAGGAGATCAAGGGCGCGG
CCGCGCTGCGCGCCATGAGCGCGCAGCTGTTCCCGCAGACACCCGAGGAG
GTGGCCGACATGGCACGTCTCGCCGAGCAAAGCGCTGGCACGCAGGTAGA
AGGCGACTCGCGCGCGTCGTCGTCGTCGTCGTCGTCGTCGTCTTCGTCGT
CGTCATCGTCGTCGTCGACATCGCCGCCGCGCGCCAAGGCGGAATTGGTG
GAGTGA
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