Gchil1930.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1930.t1
Unique NameGchil1930.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length435
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1214028..1216083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1930Gchil1930Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1214028..1216083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1930.t1Gchil1930.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1214028..1216083 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1930.t1.stop1Gchil1930.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1214028..1214030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1930.t1.CDS1Gchil1930.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1214028..1214090 -
Gchil1930.t1.CDS2Gchil1930.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1214842..1216083 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1930.t1.exon1Gchil1930.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1214028..1214090 -
Gchil1930.t1.exon2Gchil1930.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1214842..1216083 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1930.t1.intron1Gchil1930.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1214091..1214841 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1930.t1.start1Gchil1930.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1216081..1216083 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1930.t1 ID=Gchil1930.t1|Name=Gchil1930.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp
MSSLSVLPGDIQALVLDAMRLLTLDGCAPEREAAPRPRVLRQQTLLRMRA
LLPAVLCLPPLLPHYAAGAAEIDTLHPARAWDEHEYQSRAAHSPVLLRAV
ARSCGPALVALRLGAYDGAGAETVLPDVFQWCARLRELAFDDDGRVDERL
CAQLSASRVQLLRVNRPGTCVLRAVREGMGSLREVRLEQVDGAMARELRD
TLACGALALVTVLDVVFATGCCDARDSDADDDEDGGETVATCAQLGARLN
EWVPRLRALRVGLGGCTTGEGAGTRTAGSRRDVRDVLNVGERVVASRARA
TVDKRDEMKTGPRRVELQATSIRRLQQLHAMFGEACVRAHVALDVDGLGV
EVGVEGTANVVGVRRAEVRAWMVGDAFGGRSWLMALRDVSVTLDERLTRH
SRALRALWQHVGGSRSHTPSRARTCDPGVISTML*
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spliced messenger RNA

>Gchil1930.t1 ID=Gchil1930.t1|Name=Gchil1930.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00004439_pilon:1214028..1216083- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGTCTCAGTGTGCTGCCGGGCGACATACAGGCGCTGGTGCTGGA
CGCCATGCGCTTATTGACGCTCGACGGATGCGCGCCCGAGCGAGAAGCGG
CACCACGACCGCGCGTGTTACGCCAACAGACGCTGCTACGCATGCGCGCA
TTGCTGCCCGCGGTGTTGTGTCTGCCGCCGCTGCTACCGCACTACGCGGC
GGGTGCCGCGGAGATCGATACGTTGCACCCCGCACGCGCGTGGGATGAGC
ACGAGTACCAGTCGCGCGCGGCACACTCGCCAGTGCTGCTGCGCGCGGTA
GCGCGCAGCTGCGGACCAGCGCTGGTTGCGCTACGACTGGGAGCATACGA
CGGCGCGGGCGCGGAGACAGTGCTACCGGACGTGTTTCAATGGTGCGCAC
GGCTGCGCGAGCTGGCGTTTGACGACGACGGACGCGTGGACGAGCGTCTG
TGCGCGCAGCTGAGCGCGTCGCGGGTGCAATTGCTGCGAGTGAACCGGCC
GGGCACGTGCGTGCTGCGCGCGGTGCGCGAGGGCATGGGGTCACTGCGCG
AGGTGCGACTGGAGCAGGTGGACGGGGCGATGGCGCGCGAGCTGCGCGAC
ACGCTGGCATGCGGCGCGCTGGCGCTTGTGACGGTGCTGGACGTAGTATT
TGCGACAGGGTGCTGCGACGCACGCGATAGCGACGCCGACGATGATGAAG
ATGGCGGCGAGACGGTTGCGACGTGCGCGCAGCTGGGCGCGCGCTTGAAC
GAGTGGGTGCCGCGACTGCGCGCGCTGCGCGTGGGACTGGGCGGATGCAC
GACGGGCGAGGGCGCGGGCACGCGCACAGCGGGCAGTCGTCGCGATGTGC
GCGACGTGTTGAATGTGGGCGAGCGCGTGGTTGCGTCGCGCGCGCGTGCG
ACGGTAGACAAACGGGACGAGATGAAGACGGGGCCGCGACGCGTGGAGTT
GCAAGCAACGTCCATACGACGGTTGCAGCAGCTACACGCGATGTTCGGAG
AGGCGTGCGTGCGCGCGCACGTGGCGCTGGACGTGGACGGGTTAGGGGTG
GAGGTGGGCGTGGAAGGCACGGCGAATGTGGTGGGCGTGCGACGCGCGGA
GGTGCGCGCGTGGATGGTGGGCGACGCGTTTGGGGGACGCTCGTGGTTGA
TGGCTCTGCGCGACGTGAGCGTGACGCTGGACGAGCGATTGACGCGCCAC
AGCCGGGCGCTGCGCGCGCTGTGGCAGCATGTGGGGGGGAGCAGAAGCCA
TACCCCCAGCAGGGCTCGAACCTGCGACCCTGGCGTTATTAGCACCATGC
TCTAA
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protein sequence of Gchil1930.t1

>Gchil1930.t1 ID=Gchil1930.t1|Name=Gchil1930.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=435bp
MSSLSVLPGDIQALVLDAMRLLTLDGCAPEREAAPRPRVLRQQTLLRMRA
LLPAVLCLPPLLPHYAAGAAEIDTLHPARAWDEHEYQSRAAHSPVLLRAV
ARSCGPALVALRLGAYDGAGAETVLPDVFQWCARLRELAFDDDGRVDERL
CAQLSASRVQLLRVNRPGTCVLRAVREGMGSLREVRLEQVDGAMARELRD
TLACGALALVTVLDVVFATGCCDARDSDADDDEDGGETVATCAQLGARLN
EWVPRLRALRVGLGGCTTGEGAGTRTAGSRRDVRDVLNVGERVVASRARA
TVDKRDEMKTGPRRVELQATSIRRLQQLHAMFGEACVRAHVALDVDGLGV
EVGVEGTANVVGVRRAEVRAWMVGDAFGGRSWLMALRDVSVTLDERLTRH
SRALRALWQHVGGSRSHTPSRARTCDPGVISTML*
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mRNA from alignment at tig00004439_pilon:1214028..1216083-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1930.t1 ID=Gchil1930.t1|Name=Gchil1930.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2056bp|location=Sequence derived from alignment at tig00004439_pilon:1214028..1216083- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCAGTCTCAGTGTGCTGCCGGGCGACATACAGGCGCTGGTGCTGGA
CGCCATGCGCTTATTGACGCTCGACGGATGCGCGCCCGAGCGAGAAGCGG
CACCACGACCGCGCGTGTTACGCCAACAGACGCTGCTACGCATGCGCGCA
TTGCTGCCCGCGGTGTTGTGTCTGCCGCCGCTGCTACCGCACTACGCGGC
GGGTGCCGCGGAGATCGATACGTTGCACCCCGCACGCGCGTGGGATGAGC
ACGAGTACCAGTCGCGCGCGGCACACTCGCCAGTGCTGCTGCGCGCGGTA
GCGCGCAGCTGCGGACCAGCGCTGGTTGCGCTACGACTGGGAGCATACGA
CGGCGCGGGCGCGGAGACAGTGCTACCGGACGTGTTTCAATGGTGCGCAC
GGCTGCGCGAGCTGGCGTTTGACGACGACGGACGCGTGGACGAGCGTCTG
TGCGCGCAGCTGAGCGCGTCGCGGGTGCAATTGCTGCGAGTGAACCGGCC
GGGCACGTGCGTGCTGCGCGCGGTGCGCGAGGGCATGGGGTCACTGCGCG
AGGTGCGACTGGAGCAGGTGGACGGGGCGATGGCGCGCGAGCTGCGCGAC
ACGCTGGCATGCGGCGCGCTGGCGCTTGTGACGGTGCTGGACGTAGTATT
TGCGACAGGGTGCTGCGACGCACGCGATAGCGACGCCGACGATGATGAAG
ATGGCGGCGAGACGGTTGCGACGTGCGCGCAGCTGGGCGCGCGCTTGAAC
GAGTGGGTGCCGCGACTGCGCGCGCTGCGCGTGGGACTGGGCGGATGCAC
GACGGGCGAGGGCGCGGGCACGCGCACAGCGGGCAGTCGTCGCGATGTGC
GCGACGTGTTGAATGTGGGCGAGCGCGTGGTTGCGTCGCGCGCGCGTGCG
ACGGTAGACAAACGGGACGAGATGAAGACGGGGCCGCGACGCGTGGAGTT
GCAAGCAACGTCCATACGACGGTTGCAGCAGCTACACGCGATGTTCGGAG
AGGCGTGCGTGCGCGCGCACGTGGCGCTGGACGTGGACGGGTTAGGGGTG
GAGGTGGGCGTGGAAGGCACGGCGAATGTGGTGGGCGTGCGACGCGCGGA
GGTGCGCGCGTGGATGGTGGGCGACGCGTTTGGGGGACGCTCGTGGTTGA
TGGCTCTGCGCGACGTGAGCGTGACGCTGGACGAGCGATTGACGCGCCAC
AGCCGGGCGCTGCGCGCGCTGTGGCAGCATGTGGGGGGGAGCGTGCGACG
CGCGACGGTGCGGTGGTGCGGGGTGGGCGTGGCGGCGACGACGACGGCGA
CGACGACGATGATGATGACGACGCAGAGCGCGAGCAGCGACGACGCGGGG
GCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCACGAAAGAAGGCGATGGC
GCAGGTGCTGGCGCGCTGCGACGCGGTGACGACGCACATGATGGACGCGC
TGACGGCGACGCACACGCTAACGCTGTCTCTGTGCGCGGCGGCGGAGACG
ACGACGACGACGACGACGACGACGACGACGTGCGGAAAGCAGGCAGCGGC
GTGGCTGCGAGGGGCGCGGTGGCGCGGCGCGCTGCGCTCAGCGCGCGAGG
TGCGTCTGCTCGAATGCGGCTGCGTATCGCGCGCCGCCAGCGCGGTCGCG
CTGCCAGCCGTGCTACGCGCTCTATGCGGCGCGGCCCCGGCGCTACGACG
AGTGTGCGTGCTGCGCGTCAACGCAATAACAACGTCGTCGTCGTCGTCGT
CGTCGTCGTCGTCGTCGTCATCATCAGCGCGCGTCTCGACGACGACGACG
ACGACGACGACGACGATGATGGCCTCCGCCGCCGACGTGGACGATGCGCC
GCTGCTCGCGCGCGACGTGGCGCGCGCCTTCCCGCACGTGTGCGTGGCGA
GCGTGCTGCGCGCGCTGTGCGAGTGGCGCGGCGCGGCCGCGCGCGAGTGG
CCGCCGGATGAGTGCCACACGAGCCGGCGCATTTGCGCAAAAGAGAAGCC
ATACCCCCAGCAGGGCTCGAACCTGCGACCCTGGCGTTATTAGCACCATG
CTCTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1214028..1216083-

>Gchil1930.t1 ID=Gchil1930.t1|Name=Gchil1930.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00004439_pilon:1214028..1216083- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCAGTCTCAGTGTGCTGCCGGGCGACATACAGGCGCTGGTGCTGGA
CGCCATGCGCTTATTGACGCTCGACGGATGCGCGCCCGAGCGAGAAGCGG
CACCACGACCGCGCGTGTTACGCCAACAGACGCTGCTACGCATGCGCGCA
TTGCTGCCCGCGGTGTTGTGTCTGCCGCCGCTGCTACCGCACTACGCGGC
GGGTGCCGCGGAGATCGATACGTTGCACCCCGCACGCGCGTGGGATGAGC
ACGAGTACCAGTCGCGCGCGGCACACTCGCCAGTGCTGCTGCGCGCGGTA
GCGCGCAGCTGCGGACCAGCGCTGGTTGCGCTACGACTGGGAGCATACGA
CGGCGCGGGCGCGGAGACAGTGCTACCGGACGTGTTTCAATGGTGCGCAC
GGCTGCGCGAGCTGGCGTTTGACGACGACGGACGCGTGGACGAGCGTCTG
TGCGCGCAGCTGAGCGCGTCGCGGGTGCAATTGCTGCGAGTGAACCGGCC
GGGCACGTGCGTGCTGCGCGCGGTGCGCGAGGGCATGGGGTCACTGCGCG
AGGTGCGACTGGAGCAGGTGGACGGGGCGATGGCGCGCGAGCTGCGCGAC
ACGCTGGCATGCGGCGCGCTGGCGCTTGTGACGGTGCTGGACGTAGTATT
TGCGACAGGGTGCTGCGACGCACGCGATAGCGACGCCGACGATGATGAAG
ATGGCGGCGAGACGGTTGCGACGTGCGCGCAGCTGGGCGCGCGCTTGAAC
GAGTGGGTGCCGCGACTGCGCGCGCTGCGCGTGGGACTGGGCGGATGCAC
GACGGGCGAGGGCGCGGGCACGCGCACAGCGGGCAGTCGTCGCGATGTGC
GCGACGTGTTGAATGTGGGCGAGCGCGTGGTTGCGTCGCGCGCGCGTGCG
ACGGTAGACAAACGGGACGAGATGAAGACGGGGCCGCGACGCGTGGAGTT
GCAAGCAACGTCCATACGACGGTTGCAGCAGCTACACGCGATGTTCGGAG
AGGCGTGCGTGCGCGCGCACGTGGCGCTGGACGTGGACGGGTTAGGGGTG
GAGGTGGGCGTGGAAGGCACGGCGAATGTGGTGGGCGTGCGACGCGCGGA
GGTGCGCGCGTGGATGGTGGGCGACGCGTTTGGGGGACGCTCGTGGTTGA
TGGCTCTGCGCGACGTGAGCGTGACGCTGGACGAGCGATTGACGCGCCAC
AGCCGGGCGCTGCGCGCGCTGTGGCAGCATGTGGGGGGGAGCAGAAGCCA
TACCCCCAGCAGGGCTCGAACCTGCGACCCTGGCGTTATTAGCACCATGC
TCTAA
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