Gchil1925.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1925.t1
Unique Name	Gchil1925.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	475

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1202233..1203657 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7FW99
PFAMs	DUF1967,GTP1_OBG,MMR_HSR1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03979
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009658,GO:0009668,GO:0009706,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010027,GO:0010154,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019866,GO:0022414,GO:0022613,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032501,GO:0032502,GO:0034470,GO:0034641,GO:0034660,GO:0042170,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061024,GO:0061458,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Evalue	6.13e-122
EggNOG OGs	COG0536@1\|root,KOG1489@2759\|Eukaryota
Description	GTP-binding protein
COG category	P
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1925	Gchil1925	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 1202233..1203657 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1925.t1.start1	Gchil1925.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 1202233..1202235 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1925.t1.CDS1	Gchil1925.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1202233..1203657 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1925.t1.exon1	Gchil1925.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1202233..1203657 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1925.t1.stop1	Gchil1925.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 1203655..1203657 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1925.t1	Gchil1925.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 1202233..1203657 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:1202233..1203657+
coding sequence from alignment at tig00004439_pilon:1202233..1203657+

mRNA sequence

>Gchil1925.t1 ID=Gchil1925.t1|Name=Gchil1925.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=475bp
MNPRAVISEPETPQAPSSQNQSFKTPTTTNSDWMFFDVARILVKAGCGGN
GCVAFRREKGVPRGGPSGGSGGKGGSIIFVTTTGGNTLSKFRGGAAFRAK
DGANGQGKSRHGVAASDVVVPVPLGTVVRDDNGKILADLSRDGQTFRAAR
GGRGGRGNQSFKTDKNRAPRIAEQGEPGVERRLRLELKLVADVALVGFPN
AGKSTLLDAVSNARPKIADYPFTTIVPNLGVVDGVDGGNGLVFADVPGLI
EGAHRGVGMGVSFLRHIERSKVVVHILDGTVDDVIERYRAIRLELELFDQ
RLAKKKEVVLFNKADVPGVREKWDNGLKEQLIEAVGKHKRIAIISAKSKQ
GLSEMMPKLKVLVDSVVHEDNIVLLGDEDDEHLGQVPATVECVEEGRFRV
GGYQVERAYKMTNWDYIEGIDRFQRILEALGVNKMLIKAGAKDGDSVVCF
EREFDYYKEENIYSAAAALDGYID*

spliced messenger RNA

>Gchil1925.t1 ID=Gchil1925.t1|Name=Gchil1925.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00004439_pilon:1202233..1203657+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCTCGCGCAGTCATCTCTGAACCAGAAACTCCCCAAGCGCCAAG
CAGCCAAAACCAGTCCTTTAAGACGCCAACTACAACGAACTCTGACTGGA
TGTTCTTTGATGTCGCCCGTATCCTCGTCAAGGCAGGCTGCGGTGGAAAC
GGCTGCGTGGCGTTTCGTCGAGAAAAGGGCGTTCCCCGCGGTGGGCCTTC
AGGCGGTTCTGGGGGCAAGGGTGGATCAATAATTTTTGTCACTACAACAG
GTGGCAACACATTATCCAAGTTCCGCGGCGGCGCCGCGTTCAGAGCCAAA
GATGGAGCAAATGGCCAGGGTAAAAGTCGACATGGCGTAGCTGCGTCCGA
TGTTGTCGTCCCCGTACCACTTGGAACGGTTGTCCGAGATGACAATGGGA
AAATATTGGCCGACCTCTCGCGTGACGGACAAACCTTTCGCGCAGCTAGG
GGGGGACGTGGTGGTAGAGGCAATCAATCTTTTAAAACAGACAAGAATCG
CGCCCCTAGAATTGCTGAACAGGGTGAACCAGGAGTGGAGCGCAGACTGC
GGTTAGAACTGAAGCTTGTCGCCGATGTCGCCCTAGTTGGCTTCCCTAAC
GCTGGAAAGAGCACGCTTCTCGATGCTGTTTCTAATGCGCGGCCAAAGAT
TGCAGACTACCCGTTTACAACAATAGTCCCGAACCTGGGCGTTGTGGATG
GGGTTGATGGCGGAAATGGCCTTGTCTTTGCAGACGTTCCAGGGCTCATA
GAGGGCGCTCATCGCGGTGTTGGAATGGGGGTTTCGTTTTTGCGTCACAT
TGAACGGTCCAAGGTTGTTGTTCACATACTCGATGGAACGGTAGATGATG
TGATCGAAAGATATCGTGCAATTCGACTGGAATTAGAGCTTTTTGATCAA
CGTCTTGCCAAAAAGAAGGAGGTTGTCTTGTTCAACAAGGCCGACGTACC
TGGAGTTCGAGAAAAGTGGGACAATGGTTTAAAAGAACAGCTTATTGAAG
CTGTGGGGAAGCACAAAAGGATCGCAATCATCAGCGCGAAGTCCAAGCAG
GGGCTGTCGGAAATGATGCCAAAGCTGAAGGTCCTTGTGGACAGTGTTGT
GCATGAAGATAATATTGTCCTCTTGGGAGATGAGGATGATGAACACTTAG
GCCAGGTGCCAGCGACAGTTGAGTGTGTTGAAGAGGGTCGCTTTCGCGTA
GGTGGCTATCAGGTTGAACGTGCGTATAAAATGACAAATTGGGATTATAT
AGAGGGAATCGATCGATTCCAGAGAATACTCGAGGCACTTGGTGTCAACA
AAATGCTGATCAAAGCTGGCGCCAAGGATGGTGATTCTGTTGTATGCTTT
GAACGAGAGTTTGACTACTACAAGGAAGAGAACATCTACAGCGCAGCTGC
AGCGCTTGATGGGTATATTGACTGA

protein sequence of Gchil1925.t1

>Gchil1925.t1 ID=Gchil1925.t1|Name=Gchil1925.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=475bp
MNPRAVISEPETPQAPSSQNQSFKTPTTTNSDWMFFDVARILVKAGCGGN
GCVAFRREKGVPRGGPSGGSGGKGGSIIFVTTTGGNTLSKFRGGAAFRAK
DGANGQGKSRHGVAASDVVVPVPLGTVVRDDNGKILADLSRDGQTFRAAR
GGRGGRGNQSFKTDKNRAPRIAEQGEPGVERRLRLELKLVADVALVGFPN
AGKSTLLDAVSNARPKIADYPFTTIVPNLGVVDGVDGGNGLVFADVPGLI
EGAHRGVGMGVSFLRHIERSKVVVHILDGTVDDVIERYRAIRLELELFDQ
RLAKKKEVVLFNKADVPGVREKWDNGLKEQLIEAVGKHKRIAIISAKSKQ
GLSEMMPKLKVLVDSVVHEDNIVLLGDEDDEHLGQVPATVECVEEGRFRV
GGYQVERAYKMTNWDYIEGIDRFQRILEALGVNKMLIKAGAKDGDSVVCF
EREFDYYKEENIYSAAAALDGYID*

mRNA from alignment at tig00004439_pilon:1202233..1203657+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1925.t1 ID=Gchil1925.t1|Name=Gchil1925.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00004439_pilon:1202233..1203657+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCTCGCGCAGTCATCTCTGAACCAGAAACTCCCCAAGCGCCAAG
CAGCCAAAACCAGTCCTTTAAGACGCCAACTACAACGAACTCTGACTGGA
TGTTCTTTGATGTCGCCCGTATCCTCGTCAAGGCAGGCTGCGGTGGAAAC
GGCTGCGTGGCGTTTCGTCGAGAAAAGGGCGTTCCCCGCGGTGGGCCTTC
AGGCGGTTCTGGGGGCAAGGGTGGATCAATAATTTTTGTCACTACAACAG
GTGGCAACACATTATCCAAGTTCCGCGGCGGCGCCGCGTTCAGAGCCAAA
GATGGAGCAAATGGCCAGGGTAAAAGTCGACATGGCGTAGCTGCGTCCGA
TGTTGTCGTCCCCGTACCACTTGGAACGGTTGTCCGAGATGACAATGGGA
AAATATTGGCCGACCTCTCGCGTGACGGACAAACCTTTCGCGCAGCTAGG
GGGGGACGTGGTGGTAGAGGCAATCAATCTTTTAAAACAGACAAGAATCG
CGCCCCTAGAATTGCTGAACAGGGTGAACCAGGAGTGGAGCGCAGACTGC
GGTTAGAACTGAAGCTTGTCGCCGATGTCGCCCTAGTTGGCTTCCCTAAC
GCTGGAAAGAGCACGCTTCTCGATGCTGTTTCTAATGCGCGGCCAAAGAT
TGCAGACTACCCGTTTACAACAATAGTCCCGAACCTGGGCGTTGTGGATG
GGGTTGATGGCGGAAATGGCCTTGTCTTTGCAGACGTTCCAGGGCTCATA
GAGGGCGCTCATCGCGGTGTTGGAATGGGGGTTTCGTTTTTGCGTCACAT
TGAACGGTCCAAGGTTGTTGTTCACATACTCGATGGAACGGTAGATGATG
TGATCGAAAGATATCGTGCAATTCGACTGGAATTAGAGCTTTTTGATCAA
CGTCTTGCCAAAAAGAAGGAGGTTGTCTTGTTCAACAAGGCCGACGTACC
TGGAGTTCGAGAAAAGTGGGACAATGGTTTAAAAGAACAGCTTATTGAAG
CTGTGGGGAAGCACAAAAGGATCGCAATCATCAGCGCGAAGTCCAAGCAG
GGGCTGTCGGAAATGATGCCAAAGCTGAAGGTCCTTGTGGACAGTGTTGT
GCATGAAGATAATATTGTCCTCTTGGGAGATGAGGATGATGAACACTTAG
GCCAGGTGCCAGCGACAGTTGAGTGTGTTGAAGAGGGTCGCTTTCGCGTA
GGTGGCTATCAGGTTGAACGTGCGTATAAAATGACAAATTGGGATTATAT
AGAGGGAATCGATCGATTCCAGAGAATACTCGAGGCACTTGGTGTCAACA
AAATGCTGATCAAAGCTGGCGCCAAGGATGGTGATTCTGTTGTATGCTTT
GAACGAGAGTTTGACTACTACAAGGAAGAGAACATCTACAGCGCAGCTGC
AGCGCTTGATGGGTATATTGACTGA

Coding sequence (CDS) from alignment at tig00004439_pilon:1202233..1203657+

>Gchil1925.t1 ID=Gchil1925.t1|Name=Gchil1925.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1425bp|location=Sequence derived from alignment at tig00004439_pilon:1202233..1203657+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCTCGCGCAGTCATCTCTGAACCAGAAACTCCCCAAGCGCCAAG
CAGCCAAAACCAGTCCTTTAAGACGCCAACTACAACGAACTCTGACTGGA
TGTTCTTTGATGTCGCCCGTATCCTCGTCAAGGCAGGCTGCGGTGGAAAC
GGCTGCGTGGCGTTTCGTCGAGAAAAGGGCGTTCCCCGCGGTGGGCCTTC
AGGCGGTTCTGGGGGCAAGGGTGGATCAATAATTTTTGTCACTACAACAG
GTGGCAACACATTATCCAAGTTCCGCGGCGGCGCCGCGTTCAGAGCCAAA
GATGGAGCAAATGGCCAGGGTAAAAGTCGACATGGCGTAGCTGCGTCCGA
TGTTGTCGTCCCCGTACCACTTGGAACGGTTGTCCGAGATGACAATGGGA
AAATATTGGCCGACCTCTCGCGTGACGGACAAACCTTTCGCGCAGCTAGG
GGGGGACGTGGTGGTAGAGGCAATCAATCTTTTAAAACAGACAAGAATCG
CGCCCCTAGAATTGCTGAACAGGGTGAACCAGGAGTGGAGCGCAGACTGC
GGTTAGAACTGAAGCTTGTCGCCGATGTCGCCCTAGTTGGCTTCCCTAAC
GCTGGAAAGAGCACGCTTCTCGATGCTGTTTCTAATGCGCGGCCAAAGAT
TGCAGACTACCCGTTTACAACAATAGTCCCGAACCTGGGCGTTGTGGATG
GGGTTGATGGCGGAAATGGCCTTGTCTTTGCAGACGTTCCAGGGCTCATA
GAGGGCGCTCATCGCGGTGTTGGAATGGGGGTTTCGTTTTTGCGTCACAT
TGAACGGTCCAAGGTTGTTGTTCACATACTCGATGGAACGGTAGATGATG
TGATCGAAAGATATCGTGCAATTCGACTGGAATTAGAGCTTTTTGATCAA
CGTCTTGCCAAAAAGAAGGAGGTTGTCTTGTTCAACAAGGCCGACGTACC
TGGAGTTCGAGAAAAGTGGGACAATGGTTTAAAAGAACAGCTTATTGAAG
CTGTGGGGAAGCACAAAAGGATCGCAATCATCAGCGCGAAGTCCAAGCAG
GGGCTGTCGGAAATGATGCCAAAGCTGAAGGTCCTTGTGGACAGTGTTGT
GCATGAAGATAATATTGTCCTCTTGGGAGATGAGGATGATGAACACTTAG
GCCAGGTGCCAGCGACAGTTGAGTGTGTTGAAGAGGGTCGCTTTCGCGTA
GGTGGCTATCAGGTTGAACGTGCGTATAAAATGACAAATTGGGATTATAT
AGAGGGAATCGATCGATTCCAGAGAATACTCGAGGCACTTGGTGTCAACA
AAATGCTGATCAAAGCTGGCGCCAAGGATGGTGATTCTGTTGTATGCTTT
GAACGAGAGTTTGACTACTACAAGGAAGAGAACATCTACAGCGCAGCTGC
AGCGCTTGATGGGTATATTGACTGA