Gchil1922.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1922.t1
Unique Name	Gchil1922.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1193106..1194032 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S407_2V6.1
PFAMs	ADH_N,ADH_zinc_N_2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K18980
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0010319,GO:0016491,GO:0016627,GO:0016628,GO:0031967,GO:0031975,GO:0035671,GO:0035798,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0050896,GO:0055114
Evalue	2.2e-57
EggNOG OGs	COG0604@1\|root,KOG1198@2759\|Eukaryota,37RRG@33090\|Viridiplantae,3GC21@35493\|Streptophyta
EC	1.3.1.105
Description	Quinone oxidoreductase-like protein
COG category	C
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1922	Gchil1922	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 1193106..1194032 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1922.t1.start1	Gchil1922.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 1193106..1193108 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1922.t1.CDS1	Gchil1922.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1193106..1194032 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1922.t1.exon1	Gchil1922.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1193106..1194032 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1922.t1.stop1	Gchil1922.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 1194030..1194032 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1922.t1	Gchil1922.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 1193106..1194032 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:1193106..1194032+
coding sequence from alignment at tig00004439_pilon:1193106..1194032+

mRNA sequence

>Gchil1922.t1 ID=Gchil1922.t1|Name=Gchil1922.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=309bp
MTAPVIPPTMKALLQHEKEGIHNFRLTQVDTPKPNPHQVLIQVHAAALNP
IDIKRGLIVEDQYPIIAGYEVAGVVVAVGNSVTNLSVGDRVFGDIMRESA
GEKFSGSLAQFCLSPSDILAVIPTQLTFEQAAALPVAALTAMQAMETMHA
KPGHNVFISGGAGGVGIHAIQIAKNVYGAGHVATTASAAKFDFVKKYGAD
IVVNYRQEDVGEKLKAWADVVMDCVGDVEAGEKIIKEGAQIISVQAFGPR
FMMLQPTAQLMASLVSAVADGKLSAVLDSVHPFSKVHDALERIASGRAMG
KVVVNVVE*

spliced messenger RNA

>Gchil1922.t1 ID=Gchil1922.t1|Name=Gchil1922.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00004439_pilon:1193106..1194032+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCCCCAGTCATCCCCCCCACCATGAAAGCTCTGCTCCAGCATGA
AAAGGAAGGCATCCACAACTTCCGCCTCACACAAGTTGACACCCCGAAAC
CAAACCCACATCAAGTGTTGATCCAAGTGCACGCCGCCGCACTTAACCCA
ATAGACATCAAGCGCGGCCTCATCGTTGAAGACCAATACCCGATAATAGC
CGGCTATGAAGTGGCAGGAGTCGTGGTCGCCGTGGGGAACTCTGTAACCA
ATCTGTCGGTGGGCGATCGCGTGTTTGGTGACATCATGCGTGAAAGCGCC
GGCGAAAAGTTTTCAGGCTCTTTGGCACAGTTTTGCCTTTCACCATCCGA
TATCCTCGCTGTCATTCCAACACAACTCACTTTTGAACAAGCCGCCGCGC
TGCCCGTGGCAGCACTCACTGCCATGCAGGCCATGGAAACCATGCACGCC
AAGCCCGGCCACAACGTTTTCATCAGTGGCGGCGCTGGCGGCGTTGGAAT
TCATGCCATACAGATCGCCAAGAACGTGTATGGAGCAGGTCACGTTGCCA
CCACTGCCTCGGCCGCCAAGTTTGATTTCGTCAAAAAGTACGGCGCCGAC
ATCGTCGTCAATTACAGACAGGAAGATGTCGGTGAAAAGCTGAAAGCATG
GGCCGATGTTGTGATGGACTGCGTCGGTGACGTGGAAGCTGGCGAGAAAA
TTATCAAGGAAGGCGCTCAGATTATTTCTGTACAAGCTTTCGGGCCGCGT
TTCATGATGCTGCAACCCACCGCCCAACTTATGGCAAGCTTGGTCAGCGC
CGTGGCCGATGGAAAGCTTTCCGCCGTACTGGACTCGGTGCATCCGTTTT
CAAAAGTGCATGACGCGTTGGAAAGAATTGCCAGCGGAAGGGCCATGGGC
AAGGTCGTGGTCAACGTTGTGGAATGA

protein sequence of Gchil1922.t1

>Gchil1922.t1 ID=Gchil1922.t1|Name=Gchil1922.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=309bp
MTAPVIPPTMKALLQHEKEGIHNFRLTQVDTPKPNPHQVLIQVHAAALNP
IDIKRGLIVEDQYPIIAGYEVAGVVVAVGNSVTNLSVGDRVFGDIMRESA
GEKFSGSLAQFCLSPSDILAVIPTQLTFEQAAALPVAALTAMQAMETMHA
KPGHNVFISGGAGGVGIHAIQIAKNVYGAGHVATTASAAKFDFVKKYGAD
IVVNYRQEDVGEKLKAWADVVMDCVGDVEAGEKIIKEGAQIISVQAFGPR
FMMLQPTAQLMASLVSAVADGKLSAVLDSVHPFSKVHDALERIASGRAMG
KVVVNVVE*

mRNA from alignment at tig00004439_pilon:1193106..1194032+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1922.t1 ID=Gchil1922.t1|Name=Gchil1922.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00004439_pilon:1193106..1194032+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCCCCAGTCATCCCCCCCACCATGAAAGCTCTGCTCCAGCATGA
AAAGGAAGGCATCCACAACTTCCGCCTCACACAAGTTGACACCCCGAAAC
CAAACCCACATCAAGTGTTGATCCAAGTGCACGCCGCCGCACTTAACCCA
ATAGACATCAAGCGCGGCCTCATCGTTGAAGACCAATACCCGATAATAGC
CGGCTATGAAGTGGCAGGAGTCGTGGTCGCCGTGGGGAACTCTGTAACCA
ATCTGTCGGTGGGCGATCGCGTGTTTGGTGACATCATGCGTGAAAGCGCC
GGCGAAAAGTTTTCAGGCTCTTTGGCACAGTTTTGCCTTTCACCATCCGA
TATCCTCGCTGTCATTCCAACACAACTCACTTTTGAACAAGCCGCCGCGC
TGCCCGTGGCAGCACTCACTGCCATGCAGGCCATGGAAACCATGCACGCC
AAGCCCGGCCACAACGTTTTCATCAGTGGCGGCGCTGGCGGCGTTGGAAT
TCATGCCATACAGATCGCCAAGAACGTGTATGGAGCAGGTCACGTTGCCA
CCACTGCCTCGGCCGCCAAGTTTGATTTCGTCAAAAAGTACGGCGCCGAC
ATCGTCGTCAATTACAGACAGGAAGATGTCGGTGAAAAGCTGAAAGCATG
GGCCGATGTTGTGATGGACTGCGTCGGTGACGTGGAAGCTGGCGAGAAAA
TTATCAAGGAAGGCGCTCAGATTATTTCTGTACAAGCTTTCGGGCCGCGT
TTCATGATGCTGCAACCCACCGCCCAACTTATGGCAAGCTTGGTCAGCGC
CGTGGCCGATGGAAAGCTTTCCGCCGTACTGGACTCGGTGCATCCGTTTT
CAAAAGTGCATGACGCGTTGGAAAGAATTGCCAGCGGAAGGGCCATGGGC
AAGGTCGTGGTCAACGTTGTGGAATGA

Coding sequence (CDS) from alignment at tig00004439_pilon:1193106..1194032+

>Gchil1922.t1 ID=Gchil1922.t1|Name=Gchil1922.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00004439_pilon:1193106..1194032+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCCCCAGTCATCCCCCCCACCATGAAAGCTCTGCTCCAGCATGA
AAAGGAAGGCATCCACAACTTCCGCCTCACACAAGTTGACACCCCGAAAC
CAAACCCACATCAAGTGTTGATCCAAGTGCACGCCGCCGCACTTAACCCA
ATAGACATCAAGCGCGGCCTCATCGTTGAAGACCAATACCCGATAATAGC
CGGCTATGAAGTGGCAGGAGTCGTGGTCGCCGTGGGGAACTCTGTAACCA
ATCTGTCGGTGGGCGATCGCGTGTTTGGTGACATCATGCGTGAAAGCGCC
GGCGAAAAGTTTTCAGGCTCTTTGGCACAGTTTTGCCTTTCACCATCCGA
TATCCTCGCTGTCATTCCAACACAACTCACTTTTGAACAAGCCGCCGCGC
TGCCCGTGGCAGCACTCACTGCCATGCAGGCCATGGAAACCATGCACGCC
AAGCCCGGCCACAACGTTTTCATCAGTGGCGGCGCTGGCGGCGTTGGAAT
TCATGCCATACAGATCGCCAAGAACGTGTATGGAGCAGGTCACGTTGCCA
CCACTGCCTCGGCCGCCAAGTTTGATTTCGTCAAAAAGTACGGCGCCGAC
ATCGTCGTCAATTACAGACAGGAAGATGTCGGTGAAAAGCTGAAAGCATG
GGCCGATGTTGTGATGGACTGCGTCGGTGACGTGGAAGCTGGCGAGAAAA
TTATCAAGGAAGGCGCTCAGATTATTTCTGTACAAGCTTTCGGGCCGCGT
TTCATGATGCTGCAACCCACCGCCCAACTTATGGCAAGCTTGGTCAGCGC
CGTGGCCGATGGAAAGCTTTCCGCCGTACTGGACTCGGTGCATCCGTTTT
CAAAAGTGCATGACGCGTTGGAAAGAATTGCCAGCGGAAGGGCCATGGGC
AAGGTCGTGGTCAACGTTGTGGAATGA