Gchil1917.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1917.t1
Unique NameGchil1917.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length140
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1178212..1178709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog653948.CCA22146
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
KEGG koko:K09422
Evalue3.71e-32
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1917Gchil1917Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1178212..1178709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1917.t1Gchil1917.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1178212..1178709 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1917.t1.start1Gchil1917.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1178212..1178214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1917.t1.CDS1Gchil1917.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1178212..1178455 +
Gchil1917.t1.CDS2Gchil1917.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1178534..1178709 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1917.t1.exon1Gchil1917.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1178212..1178455 +
Gchil1917.t1.exon2Gchil1917.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1178534..1178709 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1917.t1.intron1Gchil1917.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1178456..1178533 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1917.t1.stop1Gchil1917.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1178707..1178709 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1917.t1 ID=Gchil1917.t1|Name=Gchil1917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=140bp
MYRTSWCQPCYPSIRLFNTPYSITKRPRKRGTVKRLWTPQEDDRLRRLAK
LRPENWNVIAESLPGRTGKQCRERWLNHLQDGIRKGFWTAKEDEIIILEQ
ARRGNRWSDIARLLPGRSDNAVKNRFNATLKKQHICHPY*
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spliced messenger RNA

>Gchil1917.t1 ID=Gchil1917.t1|Name=Gchil1917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=420bp|location=Sequence derived from alignment at tig00004439_pilon:1178212..1178709+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATAGAACAAGTTGGTGCCAACCATGTTATCCTTCTATTCGTCTTTT
CAACACGCCATACTCAATTACAAAACGCCCTCGAAAGAGGGGCACTGTCA
AGCGACTGTGGACACCACAGGAAGATGATCGACTTCGACGTCTCGCGAAA
CTACGTCCAGAGAATTGGAACGTCATTGCAGAATCTCTGCCGGGACGAAC
TGGCAAGCAATGTCGAGAGAGGTGGCTCAATCATCTGCAGGACGGAATTC
GAAAGGGGTTCTGGACGGCCAAGGAGGATGAAATTATCATACTAGAACAG
GCTCGGCGGGGAAACCGTTGGAGCGACATTGCAAGACTTTTGCCTGGACG
TAGTGACAACGCTGTGAAGAATCGCTTCAATGCCACTCTCAAGAAACAGC
ATATATGCCATCCGTACTGA
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protein sequence of Gchil1917.t1

>Gchil1917.t1 ID=Gchil1917.t1|Name=Gchil1917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=140bp
MYRTSWCQPCYPSIRLFNTPYSITKRPRKRGTVKRLWTPQEDDRLRRLAK
LRPENWNVIAESLPGRTGKQCRERWLNHLQDGIRKGFWTAKEDEIIILEQ
ARRGNRWSDIARLLPGRSDNAVKNRFNATLKKQHICHPY*
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mRNA from alignment at tig00004439_pilon:1178212..1178709+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1917.t1 ID=Gchil1917.t1|Name=Gchil1917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00004439_pilon:1178212..1178709+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATAGAACAAGTTGGTGCCAACCATGTTATCCTTCTATTCGTCTTTT
CAACACGCCATACTCAATTACAAAACGCCCTCGAAAGAGGGGCACTGTCA
AGCGACTGTGGACACCACAGGAAGATGATCGACTTCGACGTCTCGCGAAA
CTACGTCCAGAGAATTGGAACGTCATTGCAGAATCTCTGCCGGGACGAAC
TGGCAAGCAATGTCGAGAGAGGTGGCTCAATCATCTGCAGGACGGTAAGC
GAAGCTATTTCTTCCTTACATGACATTCTGTTCCTATACATCCTTCTAAC
AAACATCGTCGTTCTCATACAGGAATTCGAAAGGGGTTCTGGACGGCCAA
GGAGGATGAAATTATCATACTAGAACAGGCTCGGCGGGGAAACCGTTGGA
GCGACATTGCAAGACTTTTGCCTGGACGTAGTGACAACGCTGTGAAGAAT
CGCTTCAATGCCACTCTCAAGAAACAGCATATATGCCATCCGTACTGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1178212..1178709+

>Gchil1917.t1 ID=Gchil1917.t1|Name=Gchil1917.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=420bp|location=Sequence derived from alignment at tig00004439_pilon:1178212..1178709+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATAGAACAAGTTGGTGCCAACCATGTTATCCTTCTATTCGTCTTTT
CAACACGCCATACTCAATTACAAAACGCCCTCGAAAGAGGGGCACTGTCA
AGCGACTGTGGACACCACAGGAAGATGATCGACTTCGACGTCTCGCGAAA
CTACGTCCAGAGAATTGGAACGTCATTGCAGAATCTCTGCCGGGACGAAC
TGGCAAGCAATGTCGAGAGAGGTGGCTCAATCATCTGCAGGACGGAATTC
GAAAGGGGTTCTGGACGGCCAAGGAGGATGAAATTATCATACTAGAACAG
GCTCGGCGGGGAAACCGTTGGAGCGACATTGCAAGACTTTTGCCTGGACG
TAGTGACAACGCTGTGAAGAATCGCTTCAATGCCACTCTCAAGAAACAGC
ATATATGCCATCCGTACTGA
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