Gchil1905.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1905.t1
Unique Name	Gchil1905.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	295

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:1089786..1090670 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMS064CT
Max annot lvl	2759\|Eukaryota
Evalue	1.89e-13
EggNOG OGs	2CTQS@1\|root,2S4CA@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1905	Gchil1905	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 1089786..1090670 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1905.t1.start1	Gchil1905.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 1089786..1089788 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1905.t1.CDS1	Gchil1905.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 1089786..1090670 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1905.t1.exon1	Gchil1905.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 1089786..1090670 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1905.t1.stop1	Gchil1905.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 1090668..1090670 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1905.t1	Gchil1905.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 1089786..1090670 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:1089786..1090670+
coding sequence from alignment at tig00004439_pilon:1089786..1090670+

mRNA sequence

>Gchil1905.t1 ID=Gchil1905.t1|Name=Gchil1905.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=295bp
MRKRRYRYWSSLSNTLNELTNYLNGSKVLPTPRELQQAGRQDLAAALRRH
GWSHVSAVTGIPLASVARPRSLYLVACTPSPPLRMRPYRYWRDFRNLEHE
LRPLVRNNGLPSASQLVQAKRGYIVRAIRIHGGWKAVAHRMGVRPSSKPD
WSDISVVQQEIRRAMQRANLDDTHSPSIHIVRKFGARGLTHAIRSRHGGM
TAVVDGMQQSTKKYQKRNRCWNEQRLRQQVMSCAKAISETDQPIDMPTAA
QLRMLGRTDVIYAISKAGGFLQVAKACGLLSKRITRSYRAGSHS*

spliced messenger RNA

>Gchil1905.t1 ID=Gchil1905.t1|Name=Gchil1905.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00004439_pilon:1089786..1090670+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAAGCGTCGATATCGCTACTGGTCTTCGCTTTCCAACACGCTCAA
TGAGCTCACAAACTATCTCAATGGCTCAAAAGTCCTCCCAACTCCGCGAG
AACTCCAACAGGCCGGTCGCCAAGATTTGGCCGCCGCTCTTCGACGTCAT
GGCTGGAGCCATGTTTCGGCCGTTACTGGAATTCCTTTGGCTTCTGTAGC
GCGACCACGCTCCCTTTACCTCGTCGCTTGTACCCCATCACCACCGCTTA
GAATGAGGCCTTACCGATACTGGAGAGATTTCCGAAATCTTGAACACGAG
CTTCGCCCTTTAGTGCGCAACAACGGTTTGCCCTCCGCCAGCCAACTTGT
GCAGGCGAAGCGGGGTTACATTGTAAGAGCCATCAGAATCCATGGTGGGT
GGAAAGCAGTTGCCCATCGCATGGGTGTCAGACCATCGAGCAAACCAGAT
TGGTCTGACATATCAGTAGTTCAACAAGAAATTCGCCGTGCCATGCAACG
AGCAAATTTGGACGACACGCATAGTCCAAGCATTCATATTGTGCGAAAGT
TCGGCGCTCGCGGTTTGACGCATGCCATAAGATCCCGTCACGGTGGCATG
ACAGCCGTTGTCGACGGTATGCAGCAGAGTACAAAAAAATACCAGAAACG
AAACCGTTGTTGGAACGAGCAGCGACTTCGACAGCAGGTGATGTCTTGCG
CAAAGGCGATCTCGGAAACAGACCAGCCTATAGACATGCCAACTGCTGCG
CAACTGAGGATGCTAGGCAGAACAGATGTTATCTACGCAATTTCGAAAGC
CGGCGGTTTTCTCCAAGTGGCCAAAGCGTGCGGATTACTCTCAAAGCGTA
TAACCCGATCGTATCGGGCAGGTAGTCATTCATGA

protein sequence of Gchil1905.t1

>Gchil1905.t1 ID=Gchil1905.t1|Name=Gchil1905.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=295bp
MRKRRYRYWSSLSNTLNELTNYLNGSKVLPTPRELQQAGRQDLAAALRRH
GWSHVSAVTGIPLASVARPRSLYLVACTPSPPLRMRPYRYWRDFRNLEHE
LRPLVRNNGLPSASQLVQAKRGYIVRAIRIHGGWKAVAHRMGVRPSSKPD
WSDISVVQQEIRRAMQRANLDDTHSPSIHIVRKFGARGLTHAIRSRHGGM
TAVVDGMQQSTKKYQKRNRCWNEQRLRQQVMSCAKAISETDQPIDMPTAA
QLRMLGRTDVIYAISKAGGFLQVAKACGLLSKRITRSYRAGSHS*

mRNA from alignment at tig00004439_pilon:1089786..1090670+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1905.t1 ID=Gchil1905.t1|Name=Gchil1905.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00004439_pilon:1089786..1090670+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGAAAGCGTCGATATCGCTACTGGTCTTCGCTTTCCAACACGCTCAA
TGAGCTCACAAACTATCTCAATGGCTCAAAAGTCCTCCCAACTCCGCGAG
AACTCCAACAGGCCGGTCGCCAAGATTTGGCCGCCGCTCTTCGACGTCAT
GGCTGGAGCCATGTTTCGGCCGTTACTGGAATTCCTTTGGCTTCTGTAGC
GCGACCACGCTCCCTTTACCTCGTCGCTTGTACCCCATCACCACCGCTTA
GAATGAGGCCTTACCGATACTGGAGAGATTTCCGAAATCTTGAACACGAG
CTTCGCCCTTTAGTGCGCAACAACGGTTTGCCCTCCGCCAGCCAACTTGT
GCAGGCGAAGCGGGGTTACATTGTAAGAGCCATCAGAATCCATGGTGGGT
GGAAAGCAGTTGCCCATCGCATGGGTGTCAGACCATCGAGCAAACCAGAT
TGGTCTGACATATCAGTAGTTCAACAAGAAATTCGCCGTGCCATGCAACG
AGCAAATTTGGACGACACGCATAGTCCAAGCATTCATATTGTGCGAAAGT
TCGGCGCTCGCGGTTTGACGCATGCCATAAGATCCCGTCACGGTGGCATG
ACAGCCGTTGTCGACGGTATGCAGCAGAGTACAAAAAAATACCAGAAACG
AAACCGTTGTTGGAACGAGCAGCGACTTCGACAGCAGGTGATGTCTTGCG
CAAAGGCGATCTCGGAAACAGACCAGCCTATAGACATGCCAACTGCTGCG
CAACTGAGGATGCTAGGCAGAACAGATGTTATCTACGCAATTTCGAAAGC
CGGCGGTTTTCTCCAAGTGGCCAAAGCGTGCGGATTACTCTCAAAGCGTA
TAACCCGATCGTATCGGGCAGGTAGTCATTCATGA

Coding sequence (CDS) from alignment at tig00004439_pilon:1089786..1090670+

>Gchil1905.t1 ID=Gchil1905.t1|Name=Gchil1905.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00004439_pilon:1089786..1090670+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGAAAGCGTCGATATCGCTACTGGTCTTCGCTTTCCAACACGCTCAA
TGAGCTCACAAACTATCTCAATGGCTCAAAAGTCCTCCCAACTCCGCGAG
AACTCCAACAGGCCGGTCGCCAAGATTTGGCCGCCGCTCTTCGACGTCAT
GGCTGGAGCCATGTTTCGGCCGTTACTGGAATTCCTTTGGCTTCTGTAGC
GCGACCACGCTCCCTTTACCTCGTCGCTTGTACCCCATCACCACCGCTTA
GAATGAGGCCTTACCGATACTGGAGAGATTTCCGAAATCTTGAACACGAG
CTTCGCCCTTTAGTGCGCAACAACGGTTTGCCCTCCGCCAGCCAACTTGT
GCAGGCGAAGCGGGGTTACATTGTAAGAGCCATCAGAATCCATGGTGGGT
GGAAAGCAGTTGCCCATCGCATGGGTGTCAGACCATCGAGCAAACCAGAT
TGGTCTGACATATCAGTAGTTCAACAAGAAATTCGCCGTGCCATGCAACG
AGCAAATTTGGACGACACGCATAGTCCAAGCATTCATATTGTGCGAAAGT
TCGGCGCTCGCGGTTTGACGCATGCCATAAGATCCCGTCACGGTGGCATG
ACAGCCGTTGTCGACGGTATGCAGCAGAGTACAAAAAAATACCAGAAACG
AAACCGTTGTTGGAACGAGCAGCGACTTCGACAGCAGGTGATGTCTTGCG
CAAAGGCGATCTCGGAAACAGACCAGCCTATAGACATGCCAACTGCTGCG
CAACTGAGGATGCTAGGCAGAACAGATGTTATCTACGCAATTTCGAAAGC
CGGCGGTTTTCTCCAAGTGGCCAAAGCGTGCGGATTACTCTCAAAGCGTA
TAACCCGATCGTATCGGGCAGGTAGTCATTCATGA