Gchil1901.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1901.t1
Unique NameGchil1901.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length634
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1081864..1083876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703958.1
Preferred namesrk1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
GOsGO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue4.12e-93
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1901Gchil1901Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1081864..1083876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1901.t1Gchil1901.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1081864..1083876 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1901.t1.start1Gchil1901.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1081864..1081866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1901.t1.CDS1Gchil1901.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1081864..1082001 +
Gchil1901.t1.CDS2Gchil1901.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1082113..1083876 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1901.t1.exon1Gchil1901.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1081864..1082001 +
Gchil1901.t1.exon2Gchil1901.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1082113..1083876 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1901.t1.intron1Gchil1901.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1082002..1082112 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1901.t1.stop1Gchil1901.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1083874..1083876 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1901.t1 ID=Gchil1901.t1|Name=Gchil1901.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=634bp
MSGLRHGPPLAMNGYMDKEGRKFRARKTRYFKLKDSALFNHRRKDSLPTW
GVSLIDSRVAVGHKGEIIVQLFDGKKILLFPHSRSECDQWVDLLQRASRR
KIGNYYGVTGLVGMGSFAEVRIGYDKSTGQQVAIKVMKKNKRDTELMRSV
ECEMNFISKNIDHSNIVATYDVFDTRDNLFIVMEYMPGGMLYDILANEGY
FSEKNAANVMSDLLQAVQCLHDNDIVHRDIKPENVLAVHKTWPLDVKLAD
FGLADFVLENSFGEKSTCGMYGTPFFVAPEVIRAETYTPAVDIWSLGVLA
YNMLSGKLPFDGNNIKEVLRRVRSGKYAFPDAEWADISDHAKAFISGLLE
LEPRRRLTAAQALQHPWLTSSDISERAITNDRSALGYEQRKLRMSSMAID
DVAGLLSLEEDEEHADDHGLRALSRLFPGKNVKSAKSSRSSGSSKGHGRA
TAVTGSENRTRDMDDSAAVSNAAPLRIAHVVEEENALSEVSTGSQLRAVG
DFARWEDALRPNMAAAPWTEAGGAGARGGGGGGGGGGGGGGGGVYQGGLQ
FNDKFGGGSADDFALPAILSVKDIVRRKREAVAASGGGGGGGGGGGWGGG
GGKGHGGGSRAAAHDSDSDAEDFATAVESSALM*
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spliced messenger RNA

>Gchil1901.t1 ID=Gchil1901.t1|Name=Gchil1901.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1902bp|location=Sequence derived from alignment at tig00004439_pilon:1081864..1083876+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGCTTGCGACATGGCCCGCCGTTGGCCATGAATGGCTACATGGA
CAAGGAGGGCAGAAAGTTCCGCGCAAGGAAAACACGATACTTTAAGCTCA
AGGATTCCGCCCTATTCAATCACCGCCGGAAGGATTCGCTGCCAACATGG
GGTGTCAGTCTTATCGACAGTCGTGTCGCCGTGGGTCACAAGGGCGAAAT
CATTGTACAGTTATTCGATGGTAAGAAGATTTTGCTGTTCCCCCACTCCA
GATCAGAGTGTGATCAGTGGGTTGATCTACTGCAACGCGCGTCGCGCCGC
AAGATAGGAAATTACTATGGAGTTACCGGTTTGGTCGGCATGGGCTCGTT
TGCCGAGGTGCGAATAGGTTACGACAAGTCCACGGGGCAACAAGTGGCCA
TCAAGGTCATGAAAAAAAACAAACGCGATACAGAGCTCATGCGCAGTGTG
GAGTGTGAGATGAACTTCATCTCCAAGAACATCGACCACTCCAACATTGT
GGCCACATACGACGTTTTCGACACGCGCGACAACCTTTTCATCGTGATGG
AGTACATGCCAGGCGGCATGCTGTACGACATTCTCGCCAACGAGGGCTAC
TTTTCGGAGAAGAACGCCGCCAATGTAATGAGCGATCTTCTGCAGGCCGT
ACAATGCCTACACGACAACGACATTGTGCACCGCGACATTAAGCCAGAGA
ACGTGTTGGCGGTGCATAAAACATGGCCGCTGGACGTTAAGCTGGCGGAT
TTCGGGCTAGCCGACTTTGTGCTGGAAAACTCGTTCGGAGAAAAGTCCAC
GTGCGGCATGTATGGAACGCCTTTTTTCGTGGCGCCCGAGGTGATCCGCG
CGGAAACTTACACACCCGCGGTGGACATCTGGTCGTTGGGCGTTCTCGCG
TACAACATGTTGAGTGGCAAACTGCCGTTTGATGGAAACAACATCAAAGA
GGTACTGCGGCGCGTGCGAAGCGGTAAGTATGCGTTCCCTGATGCGGAGT
GGGCGGACATTTCGGACCATGCCAAGGCCTTCATTAGCGGGCTGTTGGAA
CTGGAACCACGGCGAAGACTGACAGCTGCGCAGGCGCTGCAGCACCCATG
GCTGACGTCGAGCGACATCTCGGAGCGTGCCATCACCAACGATCGGTCGG
CGCTTGGCTACGAGCAACGCAAGTTGCGCATGTCGTCGATGGCCATCGAC
GACGTGGCAGGGCTGCTAAGCCTGGAGGAGGACGAGGAGCACGCCGACGA
CCACGGGCTGCGCGCGCTGTCGCGGCTGTTCCCCGGCAAGAATGTCAAGA
GCGCCAAGAGCTCGCGCTCATCCGGGTCGAGCAAGGGACACGGCCGCGCG
ACGGCAGTAACAGGGTCTGAGAACCGCACGCGCGACATGGACGACAGCGC
GGCCGTGAGCAACGCGGCGCCGCTGCGTATCGCGCACGTGGTGGAGGAGG
AAAACGCGCTGAGCGAGGTGTCCACCGGAAGTCAGCTGCGCGCCGTGGGC
GACTTTGCGCGGTGGGAAGACGCGCTGCGACCCAACATGGCGGCGGCGCC
ATGGACAGAGGCCGGGggcgccggcgcgcgcggcggtggtggcggcggcg
gtggcggcggcggtggcggcggcggcggTGTTTACCAGGGCGGACTGCAG
TTCAATGACAAGTTCGGCGGCGGGAGCGCGGACGACTTTGCGCTGCCGGC
CATTCTTTCCGTCAAGGACATTGTACGGCGGAAGCGCGAGGCCGTCGCCG
CCTCcggcggcggcggcggcggcggcggcggcggcggTTGGGGCGGCGGG
GGTGGGAAAGGGCACGGCGGTGGAAGCCGCGCGGCGGCCCATGATAGCGA
CTCGGACGCAGAAGACTTTGCTACCGCGGTGGAGAGCAGCGCGCTCATGT
AA
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protein sequence of Gchil1901.t1

>Gchil1901.t1 ID=Gchil1901.t1|Name=Gchil1901.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=634bp
MSGLRHGPPLAMNGYMDKEGRKFRARKTRYFKLKDSALFNHRRKDSLPTW
GVSLIDSRVAVGHKGEIIVQLFDGKKILLFPHSRSECDQWVDLLQRASRR
KIGNYYGVTGLVGMGSFAEVRIGYDKSTGQQVAIKVMKKNKRDTELMRSV
ECEMNFISKNIDHSNIVATYDVFDTRDNLFIVMEYMPGGMLYDILANEGY
FSEKNAANVMSDLLQAVQCLHDNDIVHRDIKPENVLAVHKTWPLDVKLAD
FGLADFVLENSFGEKSTCGMYGTPFFVAPEVIRAETYTPAVDIWSLGVLA
YNMLSGKLPFDGNNIKEVLRRVRSGKYAFPDAEWADISDHAKAFISGLLE
LEPRRRLTAAQALQHPWLTSSDISERAITNDRSALGYEQRKLRMSSMAID
DVAGLLSLEEDEEHADDHGLRALSRLFPGKNVKSAKSSRSSGSSKGHGRA
TAVTGSENRTRDMDDSAAVSNAAPLRIAHVVEEENALSEVSTGSQLRAVG
DFARWEDALRPNMAAAPWTEAGGAGARGGGGGGGGGGGGGGGGVYQGGLQ
FNDKFGGGSADDFALPAILSVKDIVRRKREAVAASGGGGGGGGGGGWGGG
GGKGHGGGSRAAAHDSDSDAEDFATAVESSALM*
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mRNA from alignment at tig00004439_pilon:1081864..1083876+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1901.t1 ID=Gchil1901.t1|Name=Gchil1901.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2013bp|location=Sequence derived from alignment at tig00004439_pilon:1081864..1083876+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGGCTTGCGACATGGCCCGCCGTTGGCCATGAATGGCTACATGGA
CAAGGAGGGCAGAAAGTTCCGCGCAAGGAAAACACGATACTTTAAGCTCA
AGGATTCCGCCCTATTCAATCACCGCCGGAAGGATTCGGTACGTCTCTTC
GCGTAAAACCGTATTATCTTGCTGCCCCGTGTTCCTCACTCACTAACATC
GCCCCGCTCGCATTGGTGCCATGCCACATCTTCCCTGCCCGTTCAATAGC
TGCCAACATGGGGTGTCAGTCTTATCGACAGTCGTGTCGCCGTGGGTCAC
AAGGGCGAAATCATTGTACAGTTATTCGATGGTAAGAAGATTTTGCTGTT
CCCCCACTCCAGATCAGAGTGTGATCAGTGGGTTGATCTACTGCAACGCG
CGTCGCGCCGCAAGATAGGAAATTACTATGGAGTTACCGGTTTGGTCGGC
ATGGGCTCGTTTGCCGAGGTGCGAATAGGTTACGACAAGTCCACGGGGCA
ACAAGTGGCCATCAAGGTCATGAAAAAAAACAAACGCGATACAGAGCTCA
TGCGCAGTGTGGAGTGTGAGATGAACTTCATCTCCAAGAACATCGACCAC
TCCAACATTGTGGCCACATACGACGTTTTCGACACGCGCGACAACCTTTT
CATCGTGATGGAGTACATGCCAGGCGGCATGCTGTACGACATTCTCGCCA
ACGAGGGCTACTTTTCGGAGAAGAACGCCGCCAATGTAATGAGCGATCTT
CTGCAGGCCGTACAATGCCTACACGACAACGACATTGTGCACCGCGACAT
TAAGCCAGAGAACGTGTTGGCGGTGCATAAAACATGGCCGCTGGACGTTA
AGCTGGCGGATTTCGGGCTAGCCGACTTTGTGCTGGAAAACTCGTTCGGA
GAAAAGTCCACGTGCGGCATGTATGGAACGCCTTTTTTCGTGGCGCCCGA
GGTGATCCGCGCGGAAACTTACACACCCGCGGTGGACATCTGGTCGTTGG
GCGTTCTCGCGTACAACATGTTGAGTGGCAAACTGCCGTTTGATGGAAAC
AACATCAAAGAGGTACTGCGGCGCGTGCGAAGCGGTAAGTATGCGTTCCC
TGATGCGGAGTGGGCGGACATTTCGGACCATGCCAAGGCCTTCATTAGCG
GGCTGTTGGAACTGGAACCACGGCGAAGACTGACAGCTGCGCAGGCGCTG
CAGCACCCATGGCTGACGTCGAGCGACATCTCGGAGCGTGCCATCACCAA
CGATCGGTCGGCGCTTGGCTACGAGCAACGCAAGTTGCGCATGTCGTCGA
TGGCCATCGACGACGTGGCAGGGCTGCTAAGCCTGGAGGAGGACGAGGAG
CACGCCGACGACCACGGGCTGCGCGCGCTGTCGCGGCTGTTCCCCGGCAA
GAATGTCAAGAGCGCCAAGAGCTCGCGCTCATCCGGGTCGAGCAAGGGAC
ACGGCCGCGCGACGGCAGTAACAGGGTCTGAGAACCGCACGCGCGACATG
GACGACAGCGCGGCCGTGAGCAACGCGGCGCCGCTGCGTATCGCGCACGT
GGTGGAGGAGGAAAACGCGCTGAGCGAGGTGTCCACCGGAAGTCAGCTGC
GCGCCGTGGGCGACTTTGCGCGGTGGGAAGACGCGCTGCGACCCAACATG
GCGGCGGCGCCATGGACAGAGGCCGGGggcgccggcgcgcgcggcggtgg
tggcggcggcggtggcggcggcggtggcggcggcggcggTGTTTACCAGG
GCGGACTGCAGTTCAATGACAAGTTCGGCGGCGGGAGCGCGGACGACTTT
GCGCTGCCGGCCATTCTTTCCGTCAAGGACATTGTACGGCGGAAGCGCGA
GGCCGTCGCCGCCTCcggcggcggcggcggcggcggcggcggcggcggTT
GGGGCGGCGGGGGTGGGAAAGGGCACGGCGGTGGAAGCCGCGCGGCGGCC
CATGATAGCGACTCGGACGCAGAAGACTTTGCTACCGCGGTGGAGAGCAG
CGCGCTCATGTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1081864..1083876+

>Gchil1901.t1 ID=Gchil1901.t1|Name=Gchil1901.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1902bp|location=Sequence derived from alignment at tig00004439_pilon:1081864..1083876+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGGCTTGCGACATGGCCCGCCGTTGGCCATGAATGGCTACATGGA
CAAGGAGGGCAGAAAGTTCCGCGCAAGGAAAACACGATACTTTAAGCTCA
AGGATTCCGCCCTATTCAATCACCGCCGGAAGGATTCGCTGCCAACATGG
GGTGTCAGTCTTATCGACAGTCGTGTCGCCGTGGGTCACAAGGGCGAAAT
CATTGTACAGTTATTCGATGGTAAGAAGATTTTGCTGTTCCCCCACTCCA
GATCAGAGTGTGATCAGTGGGTTGATCTACTGCAACGCGCGTCGCGCCGC
AAGATAGGAAATTACTATGGAGTTACCGGTTTGGTCGGCATGGGCTCGTT
TGCCGAGGTGCGAATAGGTTACGACAAGTCCACGGGGCAACAAGTGGCCA
TCAAGGTCATGAAAAAAAACAAACGCGATACAGAGCTCATGCGCAGTGTG
GAGTGTGAGATGAACTTCATCTCCAAGAACATCGACCACTCCAACATTGT
GGCCACATACGACGTTTTCGACACGCGCGACAACCTTTTCATCGTGATGG
AGTACATGCCAGGCGGCATGCTGTACGACATTCTCGCCAACGAGGGCTAC
TTTTCGGAGAAGAACGCCGCCAATGTAATGAGCGATCTTCTGCAGGCCGT
ACAATGCCTACACGACAACGACATTGTGCACCGCGACATTAAGCCAGAGA
ACGTGTTGGCGGTGCATAAAACATGGCCGCTGGACGTTAAGCTGGCGGAT
TTCGGGCTAGCCGACTTTGTGCTGGAAAACTCGTTCGGAGAAAAGTCCAC
GTGCGGCATGTATGGAACGCCTTTTTTCGTGGCGCCCGAGGTGATCCGCG
CGGAAACTTACACACCCGCGGTGGACATCTGGTCGTTGGGCGTTCTCGCG
TACAACATGTTGAGTGGCAAACTGCCGTTTGATGGAAACAACATCAAAGA
GGTACTGCGGCGCGTGCGAAGCGGTAAGTATGCGTTCCCTGATGCGGAGT
GGGCGGACATTTCGGACCATGCCAAGGCCTTCATTAGCGGGCTGTTGGAA
CTGGAACCACGGCGAAGACTGACAGCTGCGCAGGCGCTGCAGCACCCATG
GCTGACGTCGAGCGACATCTCGGAGCGTGCCATCACCAACGATCGGTCGG
CGCTTGGCTACGAGCAACGCAAGTTGCGCATGTCGTCGATGGCCATCGAC
GACGTGGCAGGGCTGCTAAGCCTGGAGGAGGACGAGGAGCACGCCGACGA
CCACGGGCTGCGCGCGCTGTCGCGGCTGTTCCCCGGCAAGAATGTCAAGA
GCGCCAAGAGCTCGCGCTCATCCGGGTCGAGCAAGGGACACGGCCGCGCG
ACGGCAGTAACAGGGTCTGAGAACCGCACGCGCGACATGGACGACAGCGC
GGCCGTGAGCAACGCGGCGCCGCTGCGTATCGCGCACGTGGTGGAGGAGG
AAAACGCGCTGAGCGAGGTGTCCACCGGAAGTCAGCTGCGCGCCGTGGGC
GACTTTGCGCGGTGGGAAGACGCGCTGCGACCCAACATGGCGGCGGCGCC
ATGGACAGAGGCCGGGggcgccggcgcgcgcggcggtggtggcggcggcg
gtggcggcggcggtggcggcggcggcggTGTTTACCAGGGCGGACTGCAG
TTCAATGACAAGTTCGGCGGCGGGAGCGCGGACGACTTTGCGCTGCCGGC
CATTCTTTCCGTCAAGGACATTGTACGGCGGAAGCGCGAGGCCGTCGCCG
CCTCcggcggcggcggcggcggcggcggcggcggcggTTGGGGCGGCGGG
GGTGGGAAAGGGCACGGCGGTGGAAGCCGCGCGGCGGCCCATGATAGCGA
CTCGGACGCAGAAGACTTTGCTACCGCGGTGGAGAGCAGCGCGCTCATGT
AA
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