Gchil1900.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1900.t1
Unique NameGchil1900.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1080431..1081096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog136037.KDR15106
Preferred namePRDX6
PFAMs1-cysPrx_C,AhpC-TSA
Max annot lvl33208|Metazoa
KEGG rclassRC00034
KEGG koko:K11188
KEGG ReactionR00602,R02596,R03919,R04007,R07443
KEGG Pathwayko00940,ko01100,ko01110,map00940,map01100,map01110
GOsGO:0000302,GO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004601,GO:0004602,GO:0004620,GO:0004623,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009395,GO:0009636,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0016042,GO:0016043,GO:0016192,GO:0016209,GO:0016298,GO:0016491,GO:0016684,GO:0016787,GO:0016788,GO:0016999,GO:0017001,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019899,GO:0022607,GO:0030030,GO:0030031,GO:0030141,GO:0031323,GO:0031325,GO:0031410,GO:0031625,GO:0031974,GO:0031982,GO:0031983,GO:0032060,GO:0032940,GO:0033120,GO:0034774,GO:0035578,GO:0036230,GO:0042119,GO:0042221,GO:0042582,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043484,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045935,GO:0046434,GO:0046475,GO:0046486,GO:0046503,GO:0046903,GO:0046983,GO:0047499,GO:0048024,GO:0048026,GO:0048471,GO:0048518,GO:0048522,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051252,GO:0051254,GO:0051716,GO:0052689,GO:0055114,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0071704,GO:0071840,GO:0072593,GO:0080090,GO:0097237,GO:0097708,GO:0098754,GO:0098869,GO:0099503,GO:0120031,GO:0120036,GO:1901575,GO:1901700,GO:1903311,GO:1903313,GO:1990748
Evalue5.32e-92
EggNOG OGsCOG0450@1|root,KOG0854@2759|Eukaryota,38CN4@33154|Opisthokonta,3BBQ4@33208|Metazoa,3CW2U@33213|Bilateria,41X9B@6656|Arthropoda,3SJ4B@50557|Insecta
EC1.11.1.15,1.11.1.7
Descriptionactivity. It is involved in the biological process described with oxidation-reduction process
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1900Gchil1900Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1080431..1081096 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1900.t1.start1Gchil1900.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1080431..1080433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1900.t1.CDS1Gchil1900.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1080431..1081096 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1900.t1.exon1Gchil1900.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1080431..1081096 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1900.t1.stop1Gchil1900.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1081094..1081096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1900.t1Gchil1900.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1080431..1081096 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1900.t1 ID=Gchil1900.t1|Name=Gchil1900.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=222bp
MAPLIGETAPNFAADSTKGEITLHDYIKDSWAILFSHPADFTPVCTTELA
RVSQLLPEFEKRNVKCLALSCDDAASHKAWVPDICAYAKSTSTDIGYPIL
ADADRSIARAYGMLPAAEGDGMPMTVRSVFVIGTDGKVKLSLTYPASTGR
NFDEILRVIDSLQLAVSAKVATPVDWKKGDECVVLPSVKDEQAAELFPKG
FKPLELPSGKPYLRMTPMPDA*
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spliced messenger RNA

>Gchil1900.t1 ID=Gchil1900.t1|Name=Gchil1900.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00004439_pilon:1080431..1081096+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGCTGATCGGCGAGACGGCGCCCAACTTCGCGGCTGATTCCAC
GAAGGGTGAAATCACGTTGCACGACTACATCAAGGACAGCTGGGCGATTC
TTTTCTCGCATCCTGCCGATTTCACGCCGGTGTGCACCACCGAGCTGGCG
CGTGTGTCACAGCTATTACCCGAGTTCGAGAAAAGAAACGTCAAGTGTTT
GGCGCTCTCGTGCGACGACGCAGCGTCACACAAAGCCTGGGTACCGGACA
TCTGCGCATACGCCAAGAGTACCAGCACCGACATTGGATATCCGATCCTC
GCCGACGCCGACCGCAGCATAGCGCGCGCATACGGCATGTTACCAGCGGC
CGAGGGAGACGGCATGCCGATGACGGTACGCTCGGTGTTTGTGATCGGGA
CGGATGGAAAGGTGAAGTTGTCATTGACGTATCCGGCTAGTACTGGACGC
AACTTTGACGAGATTCTGCGCGTGATTGACTCGTTACAACTGGCTGTGAG
TGCAAAGGTGGCCACGCCAGTGGACTGGAAGAAGGGCGACGAGTGCGTGG
TGCTGCCCAGCGTTAAGGACGAGCAGGCGGCGGAGCTATTCCCAAAGGGC
TTCAAGCCGCTCGAGCTACCCAGTGGCAAGCCGTACCTGCGCATGACGCC
CATGCCGGACGCGTGA
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protein sequence of Gchil1900.t1

>Gchil1900.t1 ID=Gchil1900.t1|Name=Gchil1900.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=222bp
MAPLIGETAPNFAADSTKGEITLHDYIKDSWAILFSHPADFTPVCTTELA
RVSQLLPEFEKRNVKCLALSCDDAASHKAWVPDICAYAKSTSTDIGYPIL
ADADRSIARAYGMLPAAEGDGMPMTVRSVFVIGTDGKVKLSLTYPASTGR
NFDEILRVIDSLQLAVSAKVATPVDWKKGDECVVLPSVKDEQAAELFPKG
FKPLELPSGKPYLRMTPMPDA*
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mRNA from alignment at tig00004439_pilon:1080431..1081096+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1900.t1 ID=Gchil1900.t1|Name=Gchil1900.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00004439_pilon:1080431..1081096+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCGCTGATCGGCGAGACGGCGCCCAACTTCGCGGCTGATTCCAC
GAAGGGTGAAATCACGTTGCACGACTACATCAAGGACAGCTGGGCGATTC
TTTTCTCGCATCCTGCCGATTTCACGCCGGTGTGCACCACCGAGCTGGCG
CGTGTGTCACAGCTATTACCCGAGTTCGAGAAAAGAAACGTCAAGTGTTT
GGCGCTCTCGTGCGACGACGCAGCGTCACACAAAGCCTGGGTACCGGACA
TCTGCGCATACGCCAAGAGTACCAGCACCGACATTGGATATCCGATCCTC
GCCGACGCCGACCGCAGCATAGCGCGCGCATACGGCATGTTACCAGCGGC
CGAGGGAGACGGCATGCCGATGACGGTACGCTCGGTGTTTGTGATCGGGA
CGGATGGAAAGGTGAAGTTGTCATTGACGTATCCGGCTAGTACTGGACGC
AACTTTGACGAGATTCTGCGCGTGATTGACTCGTTACAACTGGCTGTGAG
TGCAAAGGTGGCCACGCCAGTGGACTGGAAGAAGGGCGACGAGTGCGTGG
TGCTGCCCAGCGTTAAGGACGAGCAGGCGGCGGAGCTATTCCCAAAGGGC
TTCAAGCCGCTCGAGCTACCCAGTGGCAAGCCGTACCTGCGCATGACGCC
CATGCCGGACGCGTGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1080431..1081096+

>Gchil1900.t1 ID=Gchil1900.t1|Name=Gchil1900.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00004439_pilon:1080431..1081096+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCGCTGATCGGCGAGACGGCGCCCAACTTCGCGGCTGATTCCAC
GAAGGGTGAAATCACGTTGCACGACTACATCAAGGACAGCTGGGCGATTC
TTTTCTCGCATCCTGCCGATTTCACGCCGGTGTGCACCACCGAGCTGGCG
CGTGTGTCACAGCTATTACCCGAGTTCGAGAAAAGAAACGTCAAGTGTTT
GGCGCTCTCGTGCGACGACGCAGCGTCACACAAAGCCTGGGTACCGGACA
TCTGCGCATACGCCAAGAGTACCAGCACCGACATTGGATATCCGATCCTC
GCCGACGCCGACCGCAGCATAGCGCGCGCATACGGCATGTTACCAGCGGC
CGAGGGAGACGGCATGCCGATGACGGTACGCTCGGTGTTTGTGATCGGGA
CGGATGGAAAGGTGAAGTTGTCATTGACGTATCCGGCTAGTACTGGACGC
AACTTTGACGAGATTCTGCGCGTGATTGACTCGTTACAACTGGCTGTGAG
TGCAAAGGTGGCCACGCCAGTGGACTGGAAGAAGGGCGACGAGTGCGTGG
TGCTGCCCAGCGTTAAGGACGAGCAGGCGGCGGAGCTATTCCCAAAGGGC
TTCAAGCCGCTCGAGCTACCCAGTGGCAAGCCGTACCTGCGCATGACGCC
CATGCCGGACGCGTGA
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