Gchil1891.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1891.t1
Unique NameGchil1891.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:975706..976812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1891Gchil1891Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 975706..976812 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1891.t1.stop1Gchil1891.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 975706..975708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1891.t1.CDS1Gchil1891.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 975706..976812 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1891.t1.exon1Gchil1891.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 975706..976812 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1891.t1.start1Gchil1891.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 976810..976812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1891.t1Gchil1891.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 975706..976812 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1891.t1 ID=Gchil1891.t1|Name=Gchil1891.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=369bp
MKDVHAFLQQVSADFEKHPPYNPKYQEVIEIHRLDENHLPVDNQIQTALE
ELRCLKYQLTALSGKEIFLRKLRDARSIEDLPSAQDAVAAEITIQKKKSA
LRKQKAARAAAETRFEKAIKDTCFVEKELQNARQLAQNHFKRIKSTNYTN
RLAEKIREGDWESVVRSFDDITEVDKLEGSHCGELSAILTQERLKLETQA
NEGNTEVTDIQKRLHRVEQNIQMWTSDIQSVRRSLAEQERRDRNYGALLH
EYELQNQFSQILPSITGVRITEARTNSISFEINGALFLPSDAKVDRSQVT
HTLVIKRAEREGRAHMELSLSPADVEVSDLVDGQKNIMLSVVVKEVCARI
LKFLENRQQESTAWGGGR*
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spliced messenger RNA

>Gchil1891.t1 ID=Gchil1891.t1|Name=Gchil1891.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00004439_pilon:975706..976812- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGACGTGCACGCTTTTCTTCAACAAGTTTCCGCCGATTTTGAAAA
GCATCCGCCGTACAACCCGAAATATCAGGAAGTCATTGAAATCCACCGTC
TCGATGAAAACCATTTACCGGTTGACAATCAAATCCAGACTGCGTTGGAG
GAGTTACGATGCCTCAAGTATCAGCTCACAGCACTGAGCGGCAAAGAAAT
CTTTCTTCGCAAACTTCGTGATGCTCGTTCCATTGAGGACCTTCCCTCAG
CCCAGGACGCCGTTGCCGCTGAAATAACAATTCAGAAGAAGAAAAGCGCA
TTGCGAAAGCAGAAGGCTGCCAGAGCAGCTGCTGAGACAAGATTCGAAAA
GGCTATCAAGGACACTTGTTTCGTGGAGAAGGAGCTTCAAAATGCTCGTC
AGCTCGCCCAGAATCATTTCAAGAGAATTAAATCCACCAACTACACAAAC
AGACTCGCGGAAAAGATTCGTGAAGGCGATTGGGAAAGTGTGGTGAGATC
ATTCGATGATATAACAGAAGTGGACAAGCTTGAGGGGTCTCATTGTGGTG
AGCTCAGTGCTATTCTGACTCAGGAACGACTAAAACTGGAAACACAAGCA
AACGAGGGTAATACAGAGGTGACAGATATACAAAAACGCCTTCACCGAGT
AGAGCAAAACATTCAAATGTGGACGAGCGACATACAGAGTGTGAGGCGTA
GTTTGGCGGAGCAAGAAAGAAGAGACCGAAACTACGGCGCGCTACTTCAT
GAGTACGAACTTCAAAACCAATTTTCCCAAATTCTGCCGTCTATCACAGG
GGTCCGAATTACGGAGGCTAGAACAAATAGCATCTCGTTTGAGATTAATG
GGGCTTTATTTCTTCCTTCGGATGCCAAAGTTGACAGAAGTCAAGTAACG
CATACATTGGTGATTAAGAGGGCTGAAAGGGAAGGTAGAGCCCACATGGA
GCTGAGTCTTTCACCCGCAGATGTTGAAGTAAGCGACTTGGTGGATGGGC
AGAAGAATATAATGTTATCGGTTGTGGTAAAAGAAGTCTGTGCGCGGATT
TTGAAGTTTCTAGAGAACAGACAACAAGAGTCGACAGCTTGGGGTGGAGG
ACGTTGA
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protein sequence of Gchil1891.t1

>Gchil1891.t1 ID=Gchil1891.t1|Name=Gchil1891.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=369bp
MKDVHAFLQQVSADFEKHPPYNPKYQEVIEIHRLDENHLPVDNQIQTALE
ELRCLKYQLTALSGKEIFLRKLRDARSIEDLPSAQDAVAAEITIQKKKSA
LRKQKAARAAAETRFEKAIKDTCFVEKELQNARQLAQNHFKRIKSTNYTN
RLAEKIREGDWESVVRSFDDITEVDKLEGSHCGELSAILTQERLKLETQA
NEGNTEVTDIQKRLHRVEQNIQMWTSDIQSVRRSLAEQERRDRNYGALLH
EYELQNQFSQILPSITGVRITEARTNSISFEINGALFLPSDAKVDRSQVT
HTLVIKRAEREGRAHMELSLSPADVEVSDLVDGQKNIMLSVVVKEVCARI
LKFLENRQQESTAWGGGR*
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mRNA from alignment at tig00004439_pilon:975706..976812-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1891.t1 ID=Gchil1891.t1|Name=Gchil1891.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00004439_pilon:975706..976812- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGACGTGCACGCTTTTCTTCAACAAGTTTCCGCCGATTTTGAAAA
GCATCCGCCGTACAACCCGAAATATCAGGAAGTCATTGAAATCCACCGTC
TCGATGAAAACCATTTACCGGTTGACAATCAAATCCAGACTGCGTTGGAG
GAGTTACGATGCCTCAAGTATCAGCTCACAGCACTGAGCGGCAAAGAAAT
CTTTCTTCGCAAACTTCGTGATGCTCGTTCCATTGAGGACCTTCCCTCAG
CCCAGGACGCCGTTGCCGCTGAAATAACAATTCAGAAGAAGAAAAGCGCA
TTGCGAAAGCAGAAGGCTGCCAGAGCAGCTGCTGAGACAAGATTCGAAAA
GGCTATCAAGGACACTTGTTTCGTGGAGAAGGAGCTTCAAAATGCTCGTC
AGCTCGCCCAGAATCATTTCAAGAGAATTAAATCCACCAACTACACAAAC
AGACTCGCGGAAAAGATTCGTGAAGGCGATTGGGAAAGTGTGGTGAGATC
ATTCGATGATATAACAGAAGTGGACAAGCTTGAGGGGTCTCATTGTGGTG
AGCTCAGTGCTATTCTGACTCAGGAACGACTAAAACTGGAAACACAAGCA
AACGAGGGTAATACAGAGGTGACAGATATACAAAAACGCCTTCACCGAGT
AGAGCAAAACATTCAAATGTGGACGAGCGACATACAGAGTGTGAGGCGTA
GTTTGGCGGAGCAAGAAAGAAGAGACCGAAACTACGGCGCGCTACTTCAT
GAGTACGAACTTCAAAACCAATTTTCCCAAATTCTGCCGTCTATCACAGG
GGTCCGAATTACGGAGGCTAGAACAAATAGCATCTCGTTTGAGATTAATG
GGGCTTTATTTCTTCCTTCGGATGCCAAAGTTGACAGAAGTCAAGTAACG
CATACATTGGTGATTAAGAGGGCTGAAAGGGAAGGTAGAGCCCACATGGA
GCTGAGTCTTTCACCCGCAGATGTTGAAGTAAGCGACTTGGTGGATGGGC
AGAAGAATATAATGTTATCGGTTGTGGTAAAAGAAGTCTGTGCGCGGATT
TTGAAGTTTCTAGAGAACAGACAACAAGAGTCGACAGCTTGGGGTGGAGG
ACGTTGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:975706..976812-

>Gchil1891.t1 ID=Gchil1891.t1|Name=Gchil1891.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00004439_pilon:975706..976812- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGACGTGCACGCTTTTCTTCAACAAGTTTCCGCCGATTTTGAAAA
GCATCCGCCGTACAACCCGAAATATCAGGAAGTCATTGAAATCCACCGTC
TCGATGAAAACCATTTACCGGTTGACAATCAAATCCAGACTGCGTTGGAG
GAGTTACGATGCCTCAAGTATCAGCTCACAGCACTGAGCGGCAAAGAAAT
CTTTCTTCGCAAACTTCGTGATGCTCGTTCCATTGAGGACCTTCCCTCAG
CCCAGGACGCCGTTGCCGCTGAAATAACAATTCAGAAGAAGAAAAGCGCA
TTGCGAAAGCAGAAGGCTGCCAGAGCAGCTGCTGAGACAAGATTCGAAAA
GGCTATCAAGGACACTTGTTTCGTGGAGAAGGAGCTTCAAAATGCTCGTC
AGCTCGCCCAGAATCATTTCAAGAGAATTAAATCCACCAACTACACAAAC
AGACTCGCGGAAAAGATTCGTGAAGGCGATTGGGAAAGTGTGGTGAGATC
ATTCGATGATATAACAGAAGTGGACAAGCTTGAGGGGTCTCATTGTGGTG
AGCTCAGTGCTATTCTGACTCAGGAACGACTAAAACTGGAAACACAAGCA
AACGAGGGTAATACAGAGGTGACAGATATACAAAAACGCCTTCACCGAGT
AGAGCAAAACATTCAAATGTGGACGAGCGACATACAGAGTGTGAGGCGTA
GTTTGGCGGAGCAAGAAAGAAGAGACCGAAACTACGGCGCGCTACTTCAT
GAGTACGAACTTCAAAACCAATTTTCCCAAATTCTGCCGTCTATCACAGG
GGTCCGAATTACGGAGGCTAGAACAAATAGCATCTCGTTTGAGATTAATG
GGGCTTTATTTCTTCCTTCGGATGCCAAAGTTGACAGAAGTCAAGTAACG
CATACATTGGTGATTAAGAGGGCTGAAAGGGAAGGTAGAGCCCACATGGA
GCTGAGTCTTTCACCCGCAGATGTTGAAGTAAGCGACTTGGTGGATGGGC
AGAAGAATATAATGTTATCGGTTGTGGTAAAAGAAGTCTGTGCGCGGATT
TTGAAGTTTCTAGAGAACAGACAACAAGAGTCGACAGCTTGGGGTGGAGG
ACGTTGA
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